SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15641
Annotation
mariner_transposase_[Bombyx_mori]
Full name
Innexin      
Location in the cell
Nuclear   Reliability : 3.186
 

Sequence

CDS
ATGGAATTGACTCGAGAAAATTCAAGAGCGATGATTTATTATGACTTTCGAAGTGGTTTAACACAAAAACAGTGTGTTGACCGGATGATTTCTGCATTTGGTGATGAAGCCCCATCCAAAACCACAATTTATCGCTGGTTTGCTGAGTTTCAACGTGGACGTGTCAAGCTCAGTGATGATCCCCGTCAAGGTCGTCCAAAAACTGCAGTCACCCAAGAAAACGTTGATGCTGTGCGTAAGCTGATTGAGGAAGATCGACATGTGACATACCGCGAAATTCAGGCAACTTTAGACATTGGCATGAGTCAAATACAAATAATCTTGCATGAACAATTAGGTGTAAAAAAGTTGTTTTCCCGATGGATACCGCATTCGCTCTGTGAAGAGCAAAAAGCGGCTCGCGTTACTTGGTGCGTCAGAACTCTCGAAAGATTCCACGCAGGATCCTCAAATGCTGTATACAACATTGTATCAGGTGACGAATCCTGGATATACACGTACGAACCCAAAACAAAAAACCAGTCACGAGTTTCGGTGTTCGAAAATGAGTTAAAGCCAACAAAAATTGTTCGTTCACGGAGTGTTGCAAAAAAAATGGTGGACACGTTTGTCTCCAAAACCGGCCATATTACGACTATTCCTCTTGAGGGACAAAGAACGGTTAATGCAGAATGGTATGCTAGCATTTGTTTGCCACAGGTCGTTTCTGAACTCCGTAAAGAGAACTGCAACCGCCGCATCATCCTCCATCACGACAATGCGAGGTCTCACACCGCGCACAGAACAAAAGAGTTTTTAGAGCAAGAAAACATAGAATTATTAGACCATCCGCCGTACAGCCCCGACCTAAGCCCTAATGATTTCTGTACTTTCCCTAAAATAAAGAATAAATTGCGTGGACAGAGATTTTCATCACCTGAAGAAGCTGTGGACGTCTACAAAACGGCTATTTTGGAGACCCCAACTTCCGAATGGAATTGTTGCTTCAATGATTGGTTCCATCGTATGGAAAAATGTGTCAAATTTCGCGGAGAATACTTCGAAAAGCAATAA
Protein
MELTRENSRAMIYYDFRSGLTQKQCVDRMISAFGDEAPSKTTIYRWFAEFQRGRVKLSDDPRQGRPKTAVTQENVDAVRKLIEEDRHVTYREIQATLDIGMSQIQIILHEQLGVKKLFSRWIPHSLCEEQKAARVTWCVRTLERFHAGSSNAVYNIVSGDESWIYTYEPKTKNQSRVSVFENELKPTKIVRSRSVAKKMVDTFVSKTGHITTIPLEGQRTVNAEWYASICLPQVVSELRKENCNRRIILHHDNARSHTAHRTKEFLEQENIELLDHPPYSPDLSPNDFCTFPKIKNKLRGQRFSSPEEAVDVYKTAILETPTSEWNCCFNDWFHRMEKCVKFRGEYFEKQ

Summary

Description
Structural component of the gap junctions.
Similarity
Belongs to the pannexin family.
EMBL
DQ443409    ABF51498.1    GBGD01001983    JAC86906.1    GBBI01001865    JAC16847.1    + More
GECL01002811    JAP03313.1    KX930998    APL98291.1    GAKP01015435    JAC43517.1    GECU01007301    JAT00406.1    NIVC01001798    PAA63957.1    DQ174779    ABA55502.1    NIVC01001731    PAA64652.1    AM906136    CAP20050.1    U49974    AAC52011.1    AM906135    CAP20049.1    AM231072    CAJ76986.1    AM231079    CAJ76993.1    AM231082    CAJ76996.1    AM231080    CAJ76994.1    AM231070    CAJ76984.1    KX931001    APL98294.1    AM906133    CAP20047.1    AM231069    CAJ76983.1    AM231074    CAJ76988.1    AM906154    CAP20068.1    NSIT01000395    PJE77748.1    AM906145    CAP20059.1    AM906142    AM906144    CAP20056.1    GALX01005282    JAB63184.1    KX930994    APL98287.1    AM906141    CAP20055.1    HACA01020102    CDW37463.1    LBMM01023556    KMQ82700.1    GBBI01001812    JAC16900.1    LBMM01023216    KMQ82764.1    GAHY01000550    JAA76960.1    NIVC01000364    PAA84702.1    KX930999    APL98292.1    AM906153    CAP20067.1    GBBI01001710    JAC17002.1    GQ398105    ADB28039.1    AM906137    CAP20051.1    GFTR01005295    JAW11131.1    NEVH01008208    PNF34637.1    NEVH01000249    PNF43951.1    NEVH01027114    NEVH01027075    NEVH01026089    NEVH01026087    NEVH01024426    NEVH01021956    NEVH01021925    NEVH01015301    NEVH01013964    NEVH01013194    NEVH01011885    NEVH01009393    NEVH01007824    NEVH01007823    NEVH01006721    NEVH01006578    NEVH01005888    NEVH01005885    NEVH01005277    NEVH01002149    NEVH01001358    PNF13652.1    PNF13785.1    PNF14826.1    PNF14870.1    PNF17130.1    PNF18970.1    PNF19346.1    PNF27270.1    PNF28165.1    PNF28197.1    PNF30137.1    PNF31284.1    PNF33174.1    PNF35196.1    PNF35254.1    PNF37314.1    PNF37715.1    PNF38363.1    PNF38519.1    PNF39139.1    PNF42450.1    PNF42722.1    GECU01035151    JAS72555.1    NEVH01020956    NEVH01016344    NEVH01006723    NEVH01003746    PNF20350.1    PNF25331.1    PNF37025.1    PNF40184.1    NIVC01001708    NIVC01001487    NIVC01000426    NIVC01000107    PAA64861.1    PAA67372.1    PAA83241.1    PAA90594.1    NIVC01000831    PAA76287.1    KX930995    APL98288.1    GAHY01000734    JAA76776.1    AM906139    CAP20053.1    LBMM01011272    KMQ86923.1    KX931000    APL98293.1    KL363191    KFD56881.1    LBMM01005538    KMQ91440.1    GAHY01001054    JAA76456.1    GAHY01001080    JAA76430.1    AM906140    CAP20054.1    GBGD01002089    JAC86800.1    NEVH01002553    PNF42057.1    NEVH01018383    PNF23469.1    GBGD01001947    JAC86942.1    GBGD01001923    JAC86966.1    GFTR01005334    JAW11092.1    KL363276    KFD49184.1    NEVH01025141    PNF15743.1    LBMM01010241    KMQ87583.1    AJ507226    CAD45368.1    KL367509    KFD67959.1    KX931003    APL98296.1    RQTK01000675    RUS76288.1    AM906151    AM906152    CAP20065.1    GFTR01005321    JAW11105.1    L06041    U11652    AAA28265.1    AAC46947.1    U11650    AAC46945.1    NEVH01027098    PNF13663.1    KL367557    KFD64336.1    GGMS01002163    MBY71366.1    GFDG01000031    JAV18768.1    RQTK01000506    RUS78489.1    GFAC01005487    JAT93701.1    KL363185    KFD58269.1    KL367603    KFD62063.1    KX930997    APL98290.1   
Pfam
PF13358   DDE_3        + More
PF17906   HTH_48
PF01359   Transposase_1
PF00876   Innexin
Interpro
IPR038717   Tc1-like_DDE_dom        + More
IPR041426   Mos1_HTH       
IPR001888   Transposase_1       
IPR038765   Papain-like_cys_pep_sf       
IPR000990   Innexin       
SUPFAM
SSF54001   SSF54001       
PDB
5HOO     E-value=1.7041e-31,     Score=339

Ontologies

Topology

Subcellular location
Cell membrane  
Cell junction  
Gap junction  
Length:
350
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00119
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.03853
outside
1  -  350
 
 

Population Genetic Test Statistics

Pi
14.309108
Theta
20.022635
Tajima's D
1.098815
CLR
0
CSRT
0.701564921753912
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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