SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15640
Pre Gene Modal
BGIBMGA010694
Annotation
PREDICTED:_homeobox_protein_MSH-D-like_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 2.464
 

Sequence

CDS
ATGAAGACTTCGCTCGAATGCGAGCGCGCCGACACCGCCGAAAGCGGCGGGAAGGGTCGCATATCCTTCAGCGTAGACTCGCTACTCGGCAGTAAGAACGAAACACCGCCCAAAGACACGAGCCCAAGCCACAGTCCAGCAGACAGCAATGAGGCCGCACCGGAAACCGATGAGAGCGATGTTGACATCGAAGACGTGGAGTACAACGTGGGCGATGACAGAGACGACCGAGAGATCAACAATGATGGAGAGGAGATGGACAATAGAAGCGGCGTCGTGGTCCCTCAGCCACTACTGCCACGCCTGTACCAGGGACCGGCGCCGCCGCCCGCCTGGCCCTTCGGCGCTTTCCCCTGGATGGCCCCTAACCCAATGTTCCGAGCCGGCTCACCGAATAGTAAGTTACAACACTAG
Protein
MKTSLECERADTAESGGKGRISFSVDSLLGSKNETPPKDTSPSHSPADSNEAAPETDESDVDIEDVEYNVGDDRDDREINNDGEEMDNRSGVVVPQPLLPRLYQGPAPPPAWPFGAFPWMAPNPMFRAGSPNSKLQH

Summary

Pfam
PF00046   Homeodomain
Interpro
IPR009057   Homeobox-like_sf        + More
IPR020479   Homeobox_metazoa       
IPR001356   Homeobox_dom       
IPR017970   Homeobox_CS       
SUPFAM
SSF46689   SSF46689       

Ontologies

Topology

Subcellular location
Nucleus  
Length:
137
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00884
Exp number, first 60 AAs:
0
Total prob of N-in:
0.31847
outside
1  -  137
 
 

Population Genetic Test Statistics

Pi
248.18106
Theta
222.260205
Tajima's D
0.381067
CLR
0
CSRT
0.47747612619369
Interpretation
Uncertain
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