SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15639
Pre Gene Modal
BGIBMGA010693
Annotation
PREDICTED:_muscle_segmentation_homeobox-like_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.547
 

Sequence

CDS
ATGTTAAAGAATCAAAGTTGCGAGGACAAGGAAGTTAATATGGCTATAGAGAGTGTGTCGCGGTATCCGAGCAGCCCGGTCGAGGCTACGGAACCACCGAAGCCAGCGAGAATAAGTTTCAGCGTAGCCTCGATTCTCGCCGATAATAAAGTGGACCGCGCCGAGCTCATCAGACACCACAGGACGATCCCCGAGTCTCCGCTCAGGCAGTCGCCATCAGCGCAAGTCGAGTTGCCCGGCGGTAATTACATGTCGCCGAGACCAGCTTCACAGACACCGCCCCTGAATCACAATGCATCTGCCGATGAAGATGAGCATGAAGGTTCAACAAACGATGAACATTCGATAGTCGACGTGGAAGATTCTCAGAATGGCACTCAGAGTGAAGACGAAGATAGACCGTCTGTTAGCGATAAGGGGAGATTAGTGAGGCCAATGGCTTTTAGCGCTCTAGCGGCAGCGGCGGCAGCGTACCACGGCATGGGCTGGTCTGGAGCACCTCCGGTAGTACCATCATTTGGACCTTTGTTCCAGTCGCATTTTCCTGTTGGCCATATAACAGGTTAG
Protein
MLKNQSCEDKEVNMAIESVSRYPSSPVEATEPPKPARISFSVASILADNKVDRAELIRHHRTIPESPLRQSPSAQVELPGGNYMSPRPASQTPPLNHNASADEDEHEGSTNDEHSIVDVEDSQNGTQSEDEDRPSVSDKGRLVRPMAFSALAAAAAAYHGMGWSGAPPVVPSFGPLFQSHFPVGHITG

Summary

Pfam
PF00046   Homeodomain
Interpro
IPR000047   HTH_motif        + More
IPR020479   Homeobox_metazoa       
IPR009057   Homeobox-like_sf       
IPR001356   Homeobox_dom       
IPR017970   Homeobox_CS       
SUPFAM
SSF46689   SSF46689       

Ontologies

Topology

Subcellular location
Nucleus  
Length:
188
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
9.4133
Exp number, first 60 AAs:
0
Total prob of N-in:
0.57277
outside
1  -  188
 
 

Population Genetic Test Statistics

Pi
225.634391
Theta
217.330933
Tajima's D
0.120299
CLR
0.04449
CSRT
0.397030148492575
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号