Gene

KWMTBOMO15637

Pre Gene Modal

BGIBMGA014516

Annotation

Muscle_segmentation_homeobox_[Papilio_machaon]

Location

Bomo_Chr26(-):5002619-5004546      View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear   Reliability : 4.441

CDS

ATGAAGAAATTACATATTAACGCGAACGGAGAGCCGGCCAAGTTGAAGTGCAACTTAAGAAAGCACAAACCGAATCGGAAACCTCGAACGCCCTTCACCGCGCAACAACTAAGGGACCTGGAGAGCAAGTTCGAGAAGAAACAGTATCTGAGTATCGCAGAGCGAGCTGAGTTCTCATCGTTATTGGGCCTCTCTGAGACACAGGTGAAGATCTGGTTCCAAAATCGCCGGGCGAAGGCGAAGCGAATGCAGGAGGCGGAGATCGAGAAAATCAAAATGGCCCAGTATTCGAGGCATCCACATCCTCTGTACCCTCCCCACCCCGCGCTGCACCAGTTCTTCCATCCGCACGCCCTGCTGCAAGGAAGGCCGATGACCTCCATGGGTCTGCCTCCCCATCTAGCCATGGTCCAGCCACCGGTCAACGGAACTCCGTCACCAAACACCCAACGACAGTGA

Protein

MKKLHINANGEPAKLKCNLRKHKPNRKPRTPFTAQQLRDLESKFEKKQYLSIAERAEFSSLLGLSETQVKIWFQNRRAKAKRMQEAEIEKIKMAQYSRHPHPLYPPHPALHQFFHPHALLQGRPMTSMGLPPHLAMVQPPVNGTPSPNTQRQ

Uniprot

H9JY96   A0A0N1II43   A0A3S2L8R5   A0A2H1WYF5   A0A0L7LA74   A0A212EHX8   + More
V5FTT5   A0A161M359   D6WZY9   A0A0K8T076   U4U833   A0A1B6CVH8   A0A1J1HQ86   A0A1B0G0G7   A0A1Y1KUF2   A0A1B0AGH4   A0A146M8M6   A0A195E6A6   A0A195EV33   A0A158NGA6   A0A182MEQ6   A0A2J7QBW2   F4WP40   A0A2H4T0T9   A0A195B9Y7   A0A1J1HQA9   A0A2C9H8B5   A0A1J1HQH4   Q7QAJ5   A0A182KXU6   A0A182F8H9   A0A2M4CXQ9   B3MTF1   B4JGT4   B4NBH8   W5JDB0   A0A1W4UPY9   B3P5G6   A0A0M5JC97   N6TVL7   B4M5M2   B4KCJ0  

Pubmed

19121390    26354079    26227816    22118469    18362917    19820115    + More
23537049    28004739    26823975    21347285    21719571    29158889    12364791    20966253    17994087    20920257    23761445   

EMBL

BABH01042836    KQ459941    KPJ19157.1    RSAL01000087    RVE48260.1    ODYU01012020    + More
SOQ58103.1    JTDY01001987    KOB72393.1    AGBW02014769    OWR41085.1    GALX01007416    JAB61050.1    GEMB01005817    JAR97506.1    KQ971372    EFA09623.2    GBRD01006902    JAG58919.1    KB632203    ERL90069.1    GEDC01019792    JAS17506.1    CVRI01000017    CRK90224.1    CCAG010018648    GEZM01075192    JAV64218.1    GDHC01002521    JAQ16108.1    KQ979608    KYN20379.1    KQ981965    KYN31752.1    ADTU01015103    AXCM01000175    NEVH01016294    PNF26084.1    GL888243    EGI63971.1    MF457420    ATY69457.1    KQ976542    KYM81045.1    CRK90229.1    CRK90227.1    AAAB01008888    EAA08817.4    GGFL01005936    MBW70114.1    CH902623    EDV30541.1    CH916369    EDV92688.1    CH964232    EDW81142.2    ADMH02001851    ETN60875.1    CH954182    EDV53216.1    CP012526    ALC46181.1    APGK01050363    APGK01050364    KB741169    ENN73340.1    CH940652    EDW58948.2    CH933806    EDW14809.1   

Proteomes

UP000005204    UP000053240    UP000283053    UP000037510    UP000007151    UP000007266    + More
UP000030742    UP000183832    UP000092444    UP000092445    UP000078492    UP000078541    UP000005205    UP000075883    UP000235965    UP000007755    UP000078540    UP000076407    UP000007062    UP000075882    UP000069272    UP000007801    UP000001070    UP000007798    UP000000673    UP000192221    UP000008711    UP000092553    UP000019118    UP000008792    UP000009192   

PRIDE

H9JY96   

Pfam

PF00046   Homeodomain

Interpro

IPR000047   HTH_motif        + More
IPR020479   Homeobox_metazoa       
IPR009057   Homeobox-like_sf       
IPR001356   Homeobox_dom       
IPR017970   Homeobox_CS       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

H9JY96   A0A0N1II43   A0A3S2L8R5   A0A2H1WYF5   A0A0L7LA74   A0A212EHX8   + More
V5FTT5   A0A161M359   D6WZY9   A0A0K8T076   U4U833   A0A1B6CVH8   A0A1J1HQ86   A0A1B0G0G7   A0A1Y1KUF2   A0A1B0AGH4   A0A146M8M6   A0A195E6A6   A0A195EV33   A0A158NGA6   A0A182MEQ6   A0A2J7QBW2   F4WP40   A0A2H4T0T9   A0A195B9Y7   A0A1J1HQA9   A0A2C9H8B5   A0A1J1HQH4   Q7QAJ5   A0A182KXU6   A0A182F8H9   A0A2M4CXQ9   B3MTF1   B4JGT4   B4NBH8   W5JDB0   A0A1W4UPY9   B3P5G6   A0A0M5JC97   N6TVL7   B4M5M2   B4KCJ0  

PDB

1IG7     E-value=1.07894e-14,     Score=189

KEGG

101741743    K09341 homeobox protein MSX | (RefSeq) homeobox protein H17-like

GO

GO:0043565   GO:0006355   GO:0005634   GO:0003677   GO:0000977   GO:0048598   GO:0016021   GO:0035309   GO:0007450   GO:0007420   GO:0021782   GO:0007476   GO:0010629   GO:0042659   GO:0035222   GO:0007485   GO:0016020   GO:0020037   GO:0030117   GO:0006418   GO:0003707   GO:0006281   GO:0006259  

Subcellular location

Nucleus  

Length:

152

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00348

Exp number, first 60 AAs:

0.00092

Total prob of N-in:

0.29093

outside

1  -  152

 

 

Pi

251.933169

Theta

185.394082

Tajima's D

1.142633

CLR

0.018788

CSRT

0.699565021748913

Interpretation

Uncertain