Silkworm Genome Informatics Database

Gene

KWMTBOMO15633

Pre Gene Modal

BGIBMGA010704

Annotation

PREDICTED:_homeobox_protein_bagpipe-like_[Amyelois_transitella]

Location

Bomo_Chr26(-):4820448-4822166 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.128

CDS

ATGGAGAATTACGGACAGCAGATCGAAGTGGCTTCCGCTCTGTTCAATAACAACCACATCAAACAGAATTACAATAATGGGTGCAAAAACGATTACTGCTATCTCGTCGACGACTGCGCCAAGCACAAAGGAGTTATGGAGTATAACAGCATAGTGGACGACAAATCGAATTATCCTCTGAAACAGGAAACGGAAGGCACCCAGAACTTCCACACGCCGTTTTCGGTTAAGGACATTTTAAACTCGACGAACTACAGCTACGAAAGGACCGATTTGTGGAAATGCCACGAGAGGGACCGAAGACTTGACCACGAACAAGCTTTCCACCAGAATACGTACAGCGCTCAGGAGTACTACAACCCAATGTACCCCAACATGCCGGTACACAGCAACGTAGAATATTGGAATCAGGACGCGCACGATCATAAATTCGACGAATATTACAACTACAATCCGTATTGCCATAATTGGTATCATCAGAACTATGAATACGACACGGGTACGTATGGATTAGTGGAGGCTCCGACGAAGGCTGAAGAGAGGGAGTCGCATATAGCGACGCCGCCGCCATCAGAACCCAAAGCTGGTGCCGATAAAAGTCATTACCGCGTTCTGGAGGAAGAAAAACCTTCTGCGTCGACAAGAAAAAAAACGCCCGCGGATGCCAAGCCTGACAGAAAAGAACGAAGCCTGAAACGTAAACCCAGGATCCTCTTCTCGCAAAGCCAAGTTCACGCCCTGGAGGTCCGTTTTAGAATTCAAAAATACCTCACTGCTCCCGAAAGAGAACAACTTGCCGTCTCACTGAACCTGTCGCCTACCCAAGTCAAAATCTGGTTTCAAAATCGAAGATACAAAAGTAAGAGAATCAAATCCCCCGAAGTCACGACGTCCACCGACACGAGACCCGGCAAGGTATTCGGAGTCAGGAAATTGTTTAAGCCCGAAAAGAAAGACGACGTGCCAAGCCAGAATGGTTACGAAGACAAAAGCGCTACAACTGCTGAAAGACTGTTCAGTCTAAACCCGAACAATGTGACTTCAATTGTTTATTTCGATGAAAATCTAAACTATGATAGCAACGGTAATGACGTCACTGGTGTTATTGAGGATAAATATGATAATTTAGATGTATGTAACACTGAAATATCGAGTCTGTATGAAACCAACCTAAGTACCGGTAGCCAAAAATACGAATCGGACGTTAAAAAGTATTTCACTATGAACTATTCTTGTTGA

Protein

MENYGQQIEVASALFNNNHIKQNYNNGCKNDYCYLVDDCAKHKGVMEYNSIVDDKSNYPLKQETEGTQNFHTPFSVKDILNSTNYSYERTDLWKCHERDRRLDHEQAFHQNTYSAQEYYNPMYPNMPVHSNVEYWNQDAHDHKFDEYYNYNPYCHNWYHQNYEYDTGTYGLVEAPTKAEERESHIATPPPSEPKAGADKSHYRVLEEEKPSASTRKKTPADAKPDRKERSLKRKPRILFSQSQVHALEVRFRIQKYLTAPEREQLAVSLNLSPTQVKIWFQNRRYKSKRIKSPEVTTSTDTRPGKVFGVRKLFKPEKKDDVPSQNGYEDKSATTAERLFSLNPNNVTSIVYFDENLNYDSNGNDVTGVIEDKYDNLDVCNTEISSLYETNLSTGSQKYESDVKKYFTMNYSC

Uniprot

H9JMF1 A0A2H1VM47 A0A2A4JHQ5 A0A0N0PE31 A0A194QI88 A0A212EW70 + More

Pubmed

19121390 26354079 22118469

EMBL

BABH01016907 ODYU01003314 SOQ41900.1 NWSH01001415 PCG71306.1 KQ459941 + More
KPJ19155.1 KQ459193 KPJ03166.1 AGBW02012063 OWR45742.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000007151

PRIDE

H9JMF1

Pfam

PF00046 Homeodomain

Interpro

IPR009057   Homeobox-like_sf        + More
IPR020479   Homeobox_metazoa
IPR017970   Homeobox_CS
IPR001356   Homeobox_dom

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

H9JMF1 A0A2H1VM47 A0A2A4JHQ5 A0A0N0PE31 A0A194QI88 A0A212EW70 + More

PDB

5FLV E-value=5.1866e-18, Score=223

KEGG

101739656 no KO assigned | (RefSeq) homeobox protein Nkx-2.3

GO

GO:0043565 GO:0006355 GO:0005634 GO:0003677 GO:0016020 GO:0020037 GO:0030117 GO:0006418 GO:0003707 GO:0006281 GO:0006259

Subcellular location

Nucleus

Length:

412

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00035

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01333

outside

1 - 412

Pi

258.94905

Theta

230.51382

Tajima's D

0.325113

CLR

0

CSRT

0.462526873656317

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics