SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15627  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA010711
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_protein_polybromo-1_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.242
 

Sequence

CDS
ATGAGCAAGAGACGCAGAGCGTCTTCTGGGGCAAGCCGAGCTGATGGTGACGATAGTGATGAACTAAGTAATCCTGGACCACCACCATCGAACAGGAAGAGGAAAAAGTTGGATCCTAGTGAAATTTGCCAGCAACTTTATGATACAATAAGATCTCATAAGAAAGAAGACGGGACTCTGTTATGTGACTCATTTATAAGGGCTCCAAAGAGACGACAGGAACCTCAGTACTACGAAGTTGTATCACAACCAATTGATTTACTTAGAGTACAACAAAAACTTAAAACAGACACATATGAAGACATTGAAGAATTAACAGCAGATATAGAGCTACTGGTGAACAATGCCAAAGCATTCTACAAACCTGACACTGTTGAGTATAAAGATGCAGTTGACCTTTGGAAGTTATTCTTGCATACTAAACAAACACTGGAACATGATGAAGACATGAAAACTCCTAAATTATCACGAAATGGTTCATCAAGTAGGAGATCAGATGTGGCTGAAGATTTGTCTGAAACATCCACTAACAATGAAGAAGACAATGTTTTTGAAGAGCTATTCAGTGCGGTTATGACTGCGAACATTGATGGACGCCCACTTTACCAAGCATTTCAATTTATACCTTCGAAGCGGCGTTACCCTGAGTACTTTAATGTGATTGATTCGCCTATTGACCTAAAGACGATAGCACAGAAGATTCAAGGCGGAGAATACACTACTATTGGGGAATTAGAAAAAGACTTCCTACTCATGGTCAGAAACGCCTGTCAGTTCAACGAGCCTGGAAGTCAGATTTATAAAGATGCCAAAACTTTAAAGAAAATAATACAAGTACGCAGACAAGAAATCGAGCAGCACGGTCGCAGTGGACCCGCCAAAACATCGGAACGCATACGGAGCAAACGTACATCTAGAGTCGGACCGGTGCCCACTAGTAGGGCTCTGGCCATCATGGAACCGCCCGGATCCGATACTGAAGCCTATGTCAAGCATTCTGAAGATAGCGCTGAAAGTGATGAAGATAAAGTGGATAATGAAGATTCTCCACAGTGGAAGTTGTTGGAGACTGTCAAGAACCATCTTGGTCCTAGTGGGTTACCAATGGCCGAACCATTTTGGAAATTACCATCTCGTCGCGCCTACCCTAATTATTACAAGGAGATAAAGAACCCTGTGTCTTTAAACCAAATCAAAAACAAAATACGACGTGGCAGCTACGGTACTCTGTCCGAGGTGGCGGGTGATATGAATATTATGTTTGAGAACGCCAAACAGTACAACGCCCCCACTTCCAGACTATATAAGGACTCTGTAAAATTGCAACGCTTAATGCAACAACGTGTCCAAGAACTCCTGGATATAGTTCAGTCATCATCGAGTGATGATGAAAGCCTGTCTTCAGTAAAGAATCAAACTCAAGTGCAGACTCCACGGCCAAGAGGTCGTCCGCGCATCAACCCGCTGCCCGCGCCCGCCCCGCCGCCCGCCGCCGCGCCGCTCGTGCTGAAGCCGAACATGCCGCTGAAGAAGAAGCTGCACTACGTGGCCAAGCAGCTGGTCGAGTTCACGTGCTCCGACGGCCGCCAGCCGATGCTGCTGTTCATGGAAAAGCCCAGCAAGAAACTGTATCCGGAATATTACAACGTCATCGATCGGCCCATCGATATGCTGACGATTGAAGCTAACATTAAGAACGATCGTTATAATTCACTAGAAGAGATGATAGCGGACTTCCGTTTGATGTTCTCAAACTGCCGCCATTTCAACGAAGAGGGCTCTATGGTATACGAGGACGCGAACCTTCTAGAACGGGTCATGAACGAAAAGATAAAGGAATTGAACAGCAATTACGAGAAAAAGACGCCCATGAAGAGTCTGAAGGCTCAGCCAAGGTCGAGGCAACTGTCGCCGTTCGAACAGAAGCTGAGAACGTTGTATGACGCTATCCGGGACTATAGGGATCCAAAAGCCAACCGCCAGCTGGCCCTGATCTTCATGAAGCTACCCAGTAAAACTGAGTACCCTGATTATTATGAGCTCATCAAGAACCCGATAGACATGGAGAAGATTGCTCACAAATTGAAGAGCAACAGTTACAGTTCAGTTAACGAGCTGGCTTCGGATTTCATACTGATGTTCGATAACGCCTGCAAGTACAATGAGCCCGACTCGCAGATCTACAAGGACGCTTTGATACTGCACAGAGTCTGTCTGCAGACCAAGCAGATGTTAAGTCAAGACGACGATGCAGTGCCCGACGTTCCAGCCGCTGTCCAAGAACTATTATTGAATCTCTTTACCACAGTATACAATCATCAAGATGAAGAGGGGAGGTGTTACTCAGACAGCATGGCCGAGTTACCGGAACACGACGAAACAAACAATGGCGAGAAGATGCGAGCTATATCGCTGGATTTGGTCAAGAGAAGACTTGACAAAGGGCTGTACAAGAGACTGGATCATTTCCAGCAAGATATGTTTGCTGTGTTTGAAAGAGCACGTCGCCTCTCCCGTACAGATAGTCAAATTTTCGAAGACTCAGTCGAGCTGCAGTGCTACTACATAGAGCAGAGGGACGCGCTGTGCCGCGGCACGCTGCAGTCGCCGGCGCTCACCTTCACGCGCGACACCGTCTCCACCAGCGTCGAGCTCATCAAGCAGTGCAAGCTGCTGCAAGAGAACGACGATGAGGATGAAACTAGATCGAGTACGGATGACTCCATGCCGTCGGGTGATACCAATCTTCAATCTCAGTACAGGAAAGGTGATTTCCTGTACATCCAACCTGAGAAGGGCAATAAAGACTTCAATATTGTTCAAGTAGAAAGACTTTGGACTAACAGCGATGGTATAACTATGCTGTATTGCAACATGTACTTTAGACCTCAAGAGACATTCCACATCAGAACCCGAAAGTTCCTCCAACAAGAAGTGTTCAAAACGGATGTGTACAAACCTGTGCCCCTGGACCGCGTCGTGGGACCTTGCTACGTTATGAACGTGAAGGAATATTTCAAGTTTAGACCTGAAGGCTACGCTGACAAAGACGTCTACGTCTGCGAGAGTCGGTACAGCACGAAGCACAGGTGGTTCAAAAAGATCAGAGCCTGGGAGGGCTCCGAGAAAGAAGTGTCGATTGTTCCCAGAGAGGTGGCGCTAGAGCCGCAGCGGACCGTCTCCGTGTTCCGCGAGCGCGTCGAGAAGCACAAAGACGAGCTGGCCGAGCTAGAAGTACTCGAGAACGTGCAAGAAAAGGAGAGGCCGGACGTGGTGATGTACAACCCGCTGGGCACGGACGACGAGAACACGTACTACGAGCAGTACAACACGGTGTGCTCGGGCGTCATCAAGACCGGCGACTACGTGTACGTGGTCACGGACGGCGGGAAGCAGATGATAGCGCAGGTCGACACCATCTGGGAGACCGGCGATAACAAGTGCTATTTCCGTGGACCGTTCTTGATCTTCCCGGCGGAGGTGTTGAATATCATCAATAAGCCTTTCTACAAACAAGAGGTACTTCTGACAACAATCCACGATACTAGCCCTCTTGTGGGCATCGTTGGGAAGTGTTCGGTTTTGGACTACGACGATTATCTCAAATGTCGGCCCACGGAGATATCGGAAGGCGACGTGTACGTGTGCGAGAGCATCTACGACGAGTCGAACCGCGTCGCGCGCAAGCTCAAGTCCGGCCTGCGCAAGTTCGAGCACACCAAGGACGTCACCGTAGACGAGATATACTTCTTCCCAAAACCGTTGGGTCCACCGGCCCTGGCGTCCACGCACGACGTGCAGTCGGCGTCCACCGCCTTCGCCCAGAAACCGCAACATCAAACCATGCACATGGATCCTACGGACTGCAAGCCACAGTTCACGAACCTAATCAACACGACGATCGGAAGTCAGGACGTCGAAATGATTCTAGAGAATTCGTTGGACGACTCGTCTTTGGCCTCGCCGGCGACACCTCTGTCAACAGGTGGCAATAGCAACCCTTACAACCCGTCCCTGAGCGTAACGCCCAGTCAGGAACGGATCGCAAGCCAGACCGCGACCCCGGTCACCGGGAAGAAGAAGAAGGAACAGAAGCAAAAGATCGTCACCGGCTACATACTGTACTCCAGCGAGGTGCGGAAGGCGGTCATAGCCAACAACCCGGAGGCTACATTCGGCGACATATCGCGCATCGTGGGCAACGAGTGGCGCTCGCTGCCCGCCGCCACCAAGCAGAGCTGGGAGGAGCGAGCCGCGCGCTGCAACGAGGAGACCGCCGCCAGGCTCGCCGACGAGATGCGCGAGTTGGCGCAACACACAACAATGGAGATGACGTACGAATGCGCCTGGGACACGTGCGACTGTCAGTTCGAGGACCTGACCGACTGCATGGAGCACTGCATCGGCGACGGAGGAAACACGGGGCACATCCAGCAACACTACCGCGGCTCGTTCAGCGAGTACCCCTGTCTGTGGCGGAACTGCGCGCGCGTGCGCAAGGGGCAGGCGCCCTTCCCCAACCTGCCGCGCCTGCTGCGACACGTGCGCGACCTGCACGTCAACAAGGGCAACGGACGACTCATGGCCGTGCATGAACGCTCCAGGAATTTCATGCTGTCATCGAAGAAGCCGCGGCCGGCGGTGCGGAGCGGCGTCATGTCCCCCGGAGGTACAAATAGCAGTAGTAATAGCCAAGCGTCTCTATCAGGGATGTCCCCTATGGCGAGGAACACCCCGTCCCCCGGCGCGGGGGAGGGCACGTCCACGACGATCCCCACGGCGCCGCCCGTCCGCGCCGGCCTCGACCCCCTCTTCGTTACGGCGCCGCCCAGAGCGCAGCGCGTCACGCACTCCGAAGCCTACATCAGGTACATCGAAGGCTTGCATTCAGAGCAGAAATATATAACACCATGGGAAAAATCTCTTACTCCGATGCCGGCGAACCCCGACCCGGCTCAGTTCAATATGCAGAAGATACCCGGACATTGGATCACGGACGAAGCCATCAACGGATATTTGACACATGACAAAAATCTCGCCGAAGCGGACATACAGAAGATGGACCAAAATCAAAAGGTTCTGAAAGGATTGTGCTCGTTGAGAGATTTCATGATGAAAGACGCCTTGTGTCTCTACAAGAATCTTCAGATAAATGGTTTTTAA
Protein
MSKRRRASSGASRADGDDSDELSNPGPPPSNRKRKKLDPSEICQQLYDTIRSHKKEDGTLLCDSFIRAPKRRQEPQYYEVVSQPIDLLRVQQKLKTDTYEDIEELTADIELLVNNAKAFYKPDTVEYKDAVDLWKLFLHTKQTLEHDEDMKTPKLSRNGSSSRRSDVAEDLSETSTNNEEDNVFEELFSAVMTANIDGRPLYQAFQFIPSKRRYPEYFNVIDSPIDLKTIAQKIQGGEYTTIGELEKDFLLMVRNACQFNEPGSQIYKDAKTLKKIIQVRRQEIEQHGRSGPAKTSERIRSKRTSRVGPVPTSRALAIMEPPGSDTEAYVKHSEDSAESDEDKVDNEDSPQWKLLETVKNHLGPSGLPMAEPFWKLPSRRAYPNYYKEIKNPVSLNQIKNKIRRGSYGTLSEVAGDMNIMFENAKQYNAPTSRLYKDSVKLQRLMQQRVQELLDIVQSSSSDDESLSSVKNQTQVQTPRPRGRPRINPLPAPAPPPAAAPLVLKPNMPLKKKLHYVAKQLVEFTCSDGRQPMLLFMEKPSKKLYPEYYNVIDRPIDMLTIEANIKNDRYNSLEEMIADFRLMFSNCRHFNEEGSMVYEDANLLERVMNEKIKELNSNYEKKTPMKSLKAQPRSRQLSPFEQKLRTLYDAIRDYRDPKANRQLALIFMKLPSKTEYPDYYELIKNPIDMEKIAHKLKSNSYSSVNELASDFILMFDNACKYNEPDSQIYKDALILHRVCLQTKQMLSQDDDAVPDVPAAVQELLLNLFTTVYNHQDEEGRCYSDSMAELPEHDETNNGEKMRAISLDLVKRRLDKGLYKRLDHFQQDMFAVFERARRLSRTDSQIFEDSVELQCYYIEQRDALCRGTLQSPALTFTRDTVSTSVELIKQCKLLQENDDEDETRSSTDDSMPSGDTNLQSQYRKGDFLYIQPEKGNKDFNIVQVERLWTNSDGITMLYCNMYFRPQETFHIRTRKFLQQEVFKTDVYKPVPLDRVVGPCYVMNVKEYFKFRPEGYADKDVYVCESRYSTKHRWFKKIRAWEGSEKEVSIVPREVALEPQRTVSVFRERVEKHKDELAELEVLENVQEKERPDVVMYNPLGTDDENTYYEQYNTVCSGVIKTGDYVYVVTDGGKQMIAQVDTIWETGDNKCYFRGPFLIFPAEVLNIINKPFYKQEVLLTTIHDTSPLVGIVGKCSVLDYDDYLKCRPTEISEGDVYVCESIYDESNRVARKLKSGLRKFEHTKDVTVDEIYFFPKPLGPPALASTHDVQSASTAFAQKPQHQTMHMDPTDCKPQFTNLINTTIGSQDVEMILENSLDDSSLASPATPLSTGGNSNPYNPSLSVTPSQERIASQTATPVTGKKKKEQKQKIVTGYILYSSEVRKAVIANNPEATFGDISRIVGNEWRSLPAATKQSWEERAARCNEETAARLADEMRELAQHTTMEMTYECAWDTCDCQFEDLTDCMEHCIGDGGNTGHIQQHYRGSFSEYPCLWRNCARVRKGQAPFPNLPRLLRHVRDLHVNKGNGRLMAVHERSRNFMLSSKKPRPAVRSGVMSPGGTNSSSNSQASLSGMSPMARNTPSPGAGEGTSTTIPTAPPVRAGLDPLFVTAPPRAQRVTHSEAYIRYIEGLHSEQKYITPWEKSLTPMPANPDPAQFNMQKIPGHWITDEAINGYLTHDKNLAEADIQKMDQNQKVLKGLCSLRDFMMKDALCLYKNLQINGF

Summary

Similarity
Belongs to the type-B carboxylesterase/lipase family.
EMBL
KQ459941    KPJ19149.1    KQ459193    KPJ03160.1    GDQN01006154    JAT84900.1    + More
GEZM01024033    JAV88043.1    FX985666    BBA84404.1    KQ971312    EEZ98189.2    NEVH01023281    PNF18062.1    PNF18061.1    FX985665    BBA84403.1    KYB29178.1    KYB29177.1    PNF18060.1    PNF18063.1    PNF18059.1    GL888628    EGI58753.1    KQ976461    KYM84717.1    KQ981713    KYN37353.1    ADTU01009654    KQ979814    KYN19006.1    KZ288327    PBC27958.1    KQ982169    KYQ59457.1    KK107260    EZA54195.1    GL448037    EFN85497.1    GL438827    EFN68300.1    FX985667    BBA84405.1    KQ434808    KZC06165.1    GEDC01022543    JAS14755.1    GEDC01014233    JAS23065.1    GANO01003015    JAB56856.1    APGK01035444    APGK01035445    KB740925    ENN78044.1    DS231958    EDS29058.1    GFDL01013888    JAV21157.1    GFDL01013905    JAV21140.1    GFDL01013904    JAV21141.1    GBGD01000064    JAC88825.1    CH477188    EAT48776.1    AJWK01012809    JXUM01025365    JXUM01025366    JXUM01025367    KQ560720    KXJ81153.1    DS235222    EEB13504.1    GEDC01015437    JAS21861.1    ATLV01026856    KE525420    KFB53399.1    GGFK01003839    MBW37160.1    GGFK01003807    MBW37128.1    ADMH02001470    ETN62468.1    AXCM01001187    ACPB03010353    AAAB01008987    EAA01211.4    CCAG010016757    GGFJ01000265    MBW49406.1    GDIP01231710    JAI91691.1    GDIQ01024407    JAN70330.1    LRGB01002190    KZS08730.1    GGFJ01000259    MBW49400.1    AXCN02001477    JXJN01008572    GDIQ01117067    JAL34659.1    CH940650    EDW66579.1    CH933806    EDW14025.1    GDIP01022954    JAM80761.1    NNAY01001049    OXU25338.1    CH964272    EDW84391.1    GDIP01108223    JAL95491.1    JRES01000634    KNC29730.1    GAMC01009508    JAB97047.1    GGFM01001076    MBW21827.1    GGFK01004086    MBW37407.1    GAKP01013632    JAC45320.1    CH916369    EDV93088.1    KB631924    ERL87262.1    GEZM01024031    JAV88046.1    GEZM01024032    JAV88044.1    CP012526    ALC47662.1    CM000070    EAL26840.2    GL732550    EFX79816.1    OUUW01000005    SPP81263.1    CH954182    EDV53807.1    AE014297    AAF56339.1    GDHF01001746    JAI50568.1    CM000160    EDW98893.1    BT053680    ACK77595.1    BT010048    AAQ22517.1    CH902623    EDV30236.1   
Pfam
PF00505   HMG_box        + More
PF00439   Bromodomain
PF01426   BAH
PF00002   7tm_2
PF01073   3Beta_HSD
PF00135   COesterase
Interpro
IPR037382   Rsc/polybromo        + More
IPR009071   HMG_box_dom       
IPR018359   Bromodomain_CS       
IPR001487   Bromodomain       
IPR001025   BAH_dom       
IPR036427   Bromodomain-like_sf       
IPR027180   RSC1/2/4       
IPR037968   PBRM1_BD5       
IPR036910   HMG_box_dom_sf       
IPR017981   GPCR_2-like       
IPR000832   GPCR_2_secretin-like       
IPR036291   NAD(P)-bd_dom_sf       
IPR002225   3Beta_OHSteriod_DH/Estase       
IPR013087   Znf_C2H2_type       
IPR002018   CarbesteraseB       
IPR019826   Carboxylesterase_B_AS       
IPR029058   AB_hydrolase       
SUPFAM
SSF47095   SSF47095        + More
SSF47370   SSF47370       
SSF51735   SSF51735       
SSF53474   SSF53474       
Gene 3D
PDB
1W4S     E-value=8.45655e-38,     Score=400

Ontologies

Topology

Length:
1720
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00019
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00001
outside
1  -  1720
 
 

Population Genetic Test Statistics

Pi
262.249532
Theta
17.259729
Tajima's D
1.511861
CLR
0.366528
CSRT
0.797210139493025
Interpretation
Uncertain
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