Gene

KWMTBOMO15620  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010841

Annotation

mitochondrial_ribosomal_protein_S10_[Bombyx_mori]

Location

Bomo_Chr26(+):4305739-4307784      View in EpiBrowser

Full name

28S ribosomal protein S10, mitochondrial      

Location in the cell

Mitochondrial   Reliability : 2.384

CDS

ATGAATGCAATAAGAAGTATCTGGCGTTTAACTCCTGTTAGAGGTGTTACAATACCAAATTATGCAATTCGATCACTATCCGCCAATACAACGGCGCTACCTCATGCTGTTGAACCAGTGGTTCCTCCTGTGGAATTGGACAAGTTATATAAAAGAGTAGAATTAGAAATGCGCGGTATAGACCCGGCTGTGCTACTCAGCTATTCATGGTTTTGCGTTGCTGCTGCTTCACATCTTGGTATCGAAGTCACTAAGAGTTGGGCACTAAGGAAAGCAGAGAAAGAAAGGCACACACTTTTAAAATGTGTACACATTTACAAGAAACACAAAGTGCAGTATGAAATTCGTACATACTTCAGGTTTATACATATGCAGAGGCTCACTGGATCTACGTGCGACACATATTTGGAATATATCGAACGGAATCTGCCAGAAGGTTGTGCGTTGAAAGTTACAAAAATTGAATGTCAAAAGTTACCTGAACATTTAGTACCGCCTAAGAAAGAAAGCGAAGAGTGA

Protein

MNAIRSIWRLTPVRGVTIPNYAIRSLSANTTALPHAVEPVVPPVELDKLYKRVELEMRGIDPAVLLSYSWFCVAAASHLGIEVTKSWALRKAEKERHTLLKCVHIYKKHKVQYEIRTYFRFIHMQRLTGSTCDTYLEYIERNLPEGCALKVTKIECQKLPEHLVPPKKESEE

Subunit

Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

Similarity

Belongs to the universal ribosomal protein uS10 family.

Keywords

Alternative splicing   Complete proteome   Mitochondrion   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  28S ribosomal protein S10, mitochondrial
splice variant  In isoform A.

Uniprot

Q1HQ85   A0A2H1W2V4   A0A2A4IXC1   A0A2A4J0I4   A0A212F2T7   A0A0L7LRM6   + More
A0A194PLT9   A0A194RQP3   A0A3S2M8Z1   A0A1Q3FCV7   A0A0L0BZV3   A0A1A9WLV2   B0WJV6   A0A1Q3FCH1   A0A1I8Q466   A0A084VHH4   A0A0K8WMJ6   A0A1I8M5A4   A0A0A1WGB7   B3M8F5   A0A0C9RGQ4   B4K5W2   A0A034WWR5   Q294C3   B4GLA1   A0A1L8DR90   B4M001   A0A1B0FBF4   A0A182PKJ4   B3P0S3   B4JGB7   B4HE03   A0A1W4VMT1   W8C689   B4QZ36   A0A1B0CDJ5   A0A1L8DRI9   A0A0M5J0G4   A0A1A9VL30   B4NK80   Q9VFB2-2   A0A1B2AKZ2   Q9VFB2   A0A3B0JSG2   B4PS74   A0A1B6DFF4   A0A2J7PWN7   A0A1B6G312   A0A0R1E3E4   A0A1B6LCG4   A0A1Y1LX86   A0A146LAL9   A0A0K8SXB7   E2AJ80   A0A182F6U4   A0A2R7VY60   U4U690   A0A0C9R9V1   N6UAN2  

Pubmed

19121390    22118469    26227816    26354079    26108605    24438588    + More
25315136    25830018    17994087    25348373    15632085    24495485    10731132    12537572    12537569    17550304    28004739    26823975    20798317    23537049   

EMBL

BABH01016863    DQ443167    ABF51256.1    ODYU01005946    SOQ47367.1    NWSH01005685    + More
PCG64058.1    NWSH01004564    PCG64922.1    AGBW02010685    OWR48042.1    JTDY01000233    KOB78138.1    KQ459601    KPI93704.1    KQ459875    KPJ19630.1    RSAL01000010    RVE53684.1    GFDL01009630    JAV25415.1    JRES01001097    KNC25543.1    DS231965    EDS29486.1    GFDL01009788    JAV25257.1    ATLV01013171    KE524842    KFB37418.1    GDHF01000002    JAI52312.1    GBXI01016380    JAC97911.1    CH902618    EDV38890.1    GBYB01007545    JAG77312.1    CH933806    EDW15174.1    GAKP01000180    JAC58772.1    CM000070    EAL29041.1    CH479185    EDW38325.1    GFDF01005098    JAV08986.1    CH940650    EDW67229.1    CCAG010002358    CH954181    EDV48971.1    CH916369    EDV92586.1    CH480815    EDW42095.1    GAMC01001257    JAC05299.1    CM000364    EDX12864.1    AJWK01007943    GFDF01004986    JAV09098.1    CP012526    ALC47736.1    CH964272    EDW85122.1    AE014297    AY071464    BT001464    KX532027    ANY27837.1    OUUW01000008    SPP83943.1    CM000160    EDW97494.1    GEDC01012867    JAS24431.1    NEVH01020876    PNF20736.1    GECZ01012988    JAS56781.1    KRK03776.1    GEBQ01018589    JAT21388.1    GEZM01050262    JAV75647.1    GDHC01013261    JAQ05368.1    GBRD01007878    GDHC01017007    JAG57943.1    JAQ01622.1    GL439967    EFN66520.1    KK854165    PTY12437.1    KB632168    ERL89389.1    GBYB01005015    JAG74782.1    APGK01032106    KB740835    ENN78795.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000037510    UP000053268    UP000053240    + More
UP000283053    UP000037069    UP000091820    UP000002320    UP000095300    UP000030765    UP000095301    UP000007801    UP000009192    UP000001819    UP000008744    UP000008792    UP000092444    UP000075885    UP000008711    UP000001070    UP000001292    UP000192221    UP000000304    UP000092461    UP000092553    UP000078200    UP000007798    UP000000803    UP000268350    UP000002282    UP000235965    UP000000311    UP000069272    UP000030742    UP000019118   

PRIDE

Q1HQ85    Q9VFB2   

Pfam

PF00338   Ribosomal_S10        + More
PF07528   DZF
PF13358   DDE_3
PF06585   JHBP

Interpro

IPR040055   MRPS10        + More
IPR027486   Ribosomal_S10_dom       
IPR036838   Ribosomal_S10_dom_sf       
IPR006116   2-5-oligoadenylate_synth_N       
IPR006561   DZF_dom       
IPR038717   Tc1-like_DDE_dom       
IPR010562   Haemolymph_juvenile_hormone-bd       
IPR038606   To_sf       

SUPFAM

SSF54999   SSF54999       

Gene 3D

3.30.70.600     3.15.10.30    

ProteinModelPortal

Q1HQ85   A0A2H1W2V4   A0A2A4IXC1   A0A2A4J0I4   A0A212F2T7   A0A0L7LRM6   + More
A0A194PLT9   A0A194RQP3   A0A3S2M8Z1   A0A1Q3FCV7   A0A0L0BZV3   A0A1A9WLV2   B0WJV6   A0A1Q3FCH1   A0A1I8Q466   A0A084VHH4   A0A0K8WMJ6   A0A1I8M5A4   A0A0A1WGB7   B3M8F5   A0A0C9RGQ4   B4K5W2   A0A034WWR5   Q294C3   B4GLA1   A0A1L8DR90   B4M001   A0A1B0FBF4   A0A182PKJ4   B3P0S3   B4JGB7   B4HE03   A0A1W4VMT1   W8C689   B4QZ36   A0A1B0CDJ5   A0A1L8DRI9   A0A0M5J0G4   A0A1A9VL30   B4NK80   Q9VFB2-2   A0A1B2AKZ2   Q9VFB2   A0A3B0JSG2   B4PS74   A0A1B6DFF4   A0A2J7PWN7   A0A1B6G312   A0A0R1E3E4   A0A1B6LCG4   A0A1Y1LX86   A0A146LAL9   A0A0K8SXB7   E2AJ80   A0A182F6U4   A0A2R7VY60   U4U690   A0A0C9R9V1   N6UAN2  

PDB

6NF8     E-value=4.72091e-30,     Score=322

KEGG

732896    K02946 small subunit ribosomal protein S10 | (RefSeq) mRpS10; mitochondrial ribosomal protein S10

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005763   GO:0032543   GO:0003735   GO:0006412   GO:0006955   GO:0005524   GO:0016740   GO:0003723  

PANTHER

PTHR13334  

Subcellular location

Mitochondrion  

Length:

172

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.085

Exp number, first 60 AAs:

0.11479

Total prob of N-in:

0.23073

outside

1  -  172

 

 

Pi

270.930644

Theta

207.461832

Tajima's D

0.804854

CLR

0

CSRT

0.6035198240088

Interpretation

Uncertain