Gene

KWMTBOMO15609

Annotation

PREDICTED:_zinc_finger_and_SCAN_domain-containing_protein_12-like_[Bombyx_mori]

Location

Bomo_Chr26(-):3942739-3943998      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 3.413

CDS

ATGTTGGCATTATTTTATCAAATGAAAATGGCTCATCGTCAATCCAACCGAATGGATGTAGATTTTATCGATTACTATCGTAAAATCCAACGGAACTTTAGTACAACAAAAGACAATCTCGCTTCGAAATGCAGAATTTGCTTAAATTCGGGCTGTGTACTAATCACAGACAACGATAACACTAAACAACTGTTGGAGACCCTACAAGTTTTAGGCGATATAAATATAGATGAAGAAAAGGCATGGCCCAAATATTTGTGCGAAATGTGCTATAAATTTTTAATGATAGTAATCGAATTTAGAAACGTCGCAAAACAGTCATTAGAAATATTAAAACTACCAGTCAAAGAAGAGATATTTGAAACACAAGAATTAAATATTTTTAATGATGCTAATGACAATCACAATAATGATGCTGAACAATGGTCCCACGAACAAGCCCCCGCTTGTGAAGAAAACCCCCCAAAGAAAACAGGAATGAAGTTTTCACAAAAAATAACATGCAAAGTATGTAGTAAAGTAGTCACGAAATCATATTACAGAGACCACATGACTATGCATGATCCTGATCATAAAAAGTATGTTTGTGATAAATGTGGAAAATCATTCCGATTACGATGTGCATATCACAATCACAATCGTAGACACACAAATGACTTCTCATATAAATGTCAATTTTGTCCTTATAGGGGTCGATATCCAGAATTACTCAAAACACATTTAAGAACACATACTGGAGAATACCAATTTATGTGTACTGAATGTCCTGCTCGTTTTTTGTTTAAAAGTAACTTAAATACTCACATGTTTAAGCATAAAATACCACAATTTAAATGTGACGGGTGCAAGAGAGCTTTCCACTCAAAATTATTGTTACAGAGACATTATCAAGCTGATCATGTGGGTATAAAAAATCATGTATGCAACATTTGTGGGAAGGCTTTTGGTTACCGAAACGCTATGATGAAACACCAAAGACGTGTTCATAAAAGAGAGAAAATGCTTCACGGACGAATGCCATCTTATTTGATGGCTGTGCATGACAATGCTGAACAGAATTTTGATTGA

Protein

MLALFYQMKMAHRQSNRMDVDFIDYYRKIQRNFSTTKDNLASKCRICLNSGCVLITDNDNTKQLLETLQVLGDINIDEEKAWPKYLCEMCYKFLMIVIEFRNVAKQSLEILKLPVKEEIFETQELNIFNDANDNHNNDAEQWSHEQAPACEENPPKKTGMKFSQKITCKVCSKVVTKSYYRDHMTMHDPDHKKYVCDKCGKSFRLRCAYHNHNRRHTNDFSYKCQFCPYRGRYPELLKTHLRTHTGEYQFMCTECPARFLFKSNLNTHMFKHKIPQFKCDGCKRAFHSKLLLQRHYQADHVGIKNHVCNICGKAFGYRNAMMKHQRRVHKREKMLHGRMPSYLMAVHDNAEQNFD

Uniprot

A0A2A4JER5   A0A194RQM6   A0A0L7KN53   A0A194PJV7   A0A1E1W6T3   A0A2H1WH54   + More
A0A212EYL8   S4PD46   A0A2A4JFN6   H9JMG6   A0A0L7K2S7   A0A194PK55   A0A194RP61   H9JMG1   S4PGP2   A0A2H1W341   A0A0L7LRQ9   A0A1E1WIZ6   A0A2H1VT86   S4PXU8   A0A2A4JG74   A0A194PJ02   A0A2H1VBX8   A0A2H1VC51   A0A2A4IYH1   H9J326   A0A194PI86   A0A0M4EKL0   A0A194QUX4   A0A194QTY8  

Pubmed

26354079    26227816    22118469    23622113    19121390   

EMBL

NWSH01001646    PCG70575.1    KQ459875    KPJ19615.1    JTDY01008160    KOB64707.1    + More
KQ459601    KPI93716.1    GDQN01008348    JAT82706.1    ODYU01008528    SOQ52212.1    AGBW02011486    OWR46570.1    GAIX01003806    JAA88754.1    PCG70576.1    BABH01016826    JTDY01015286    KOB51959.1    KPI93702.1    KPJ19633.1    BABH01016863    GAIX01003572    JAA88988.1    ODYU01005946    SOQ47366.1    JTDY01000233    KOB78143.1    GDQN01004061    JAT86993.1    ODYU01004307    SOQ44037.1    GAIX01004413    JAA88147.1    PCG70574.1    KQ459603    KPI93028.1    ODYU01001731    SOQ38327.1    ODYU01001747    SOQ38366.1    NWSH01005491    PCG64163.1    BABH01037652    KPI93027.1    CP012526    ALC47758.1    KQ461137    KPJ08780.1    KPJ08779.1   

Proteomes

UP000218220    UP000053240    UP000037510    UP000053268    UP000007151    UP000005204    + More
UP000092553   

PRIDE

H9JMG6    H9JMG1    H9J326   

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD

Interpro

IPR012934   Znf_AD        + More
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

A0A2A4JER5   A0A194RQM6   A0A0L7KN53   A0A194PJV7   A0A1E1W6T3   A0A2H1WH54   + More
A0A212EYL8   S4PD46   A0A2A4JFN6   H9JMG6   A0A0L7K2S7   A0A194PK55   A0A194RP61   H9JMG1   S4PGP2   A0A2H1W341   A0A0L7LRQ9   A0A1E1WIZ6   A0A2H1VT86   S4PXU8   A0A2A4JG74   A0A194PJ02   A0A2H1VBX8   A0A2H1VC51   A0A2A4IYH1   H9J326   A0A194PI86   A0A0M4EKL0   A0A194QUX4   A0A194QTY8  

PDB

2I13     E-value=1.30459e-16,     Score=211

KEGG

105841256    no KO assigned | (RefSeq) zinc finger and SCAN domain-containing protein 12-like

GO

GO:0003676   GO:0008270   GO:0005634   GO:0046872   GO:0030126   GO:0030117   GO:0006418   GO:0003707   GO:0006281   GO:0006259  

Length:

355

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00417

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00731

outside

1  -  355

 

 

Pi

160.573452

Theta

162.806955

Tajima's D

-0.238267

CLR

91.505694

CSRT

0.307534623268837

Interpretation

Uncertain