Gene

KWMTBOMO15599

Pre Gene Modal

BGIBMGA010833

Annotation

PREDICTED:_homeobox_protein_slou_[Bombyx_mori]

Location

Bomo_Chr26(+):3765799-3768737      View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear   Reliability : 4.017

CDS

ATGGACGACGACATCCTTACGCAGTCCGACCTCGACGAGAACGGAGATCCAAAAAGCCCCAACAGTTCCTCATCGAAGAAAAGCAAGAGTCAAAGCAGGGACGCTAAAGGTGGCACCAAGCCGAGGAGAGCCAGAACCGCCTTCACATACGAGCAACTCGTGTCCTTGGAGAATAAATTTAAGACAACCAGATACTTATCGGTTTGTGAGAGGCTCAACTTAGCGCTAAGTTTGAGTTTGACCGAGACACAGGTCAAAATATGGTTCCAAAACCGTCGAACAAAGTGGAAGAAGCAAAATCCTGGGATGGACGTGAATAGTCCGACTGTCCCGCCCCCTCCAGCTGGAGGGTTCCCTTCGGGTCATTATCCTGGGGGGCTATTATACTCTCATGGAGTTCCATACCCGTTCACAGGCCCTGGGCCCTACGCTCCATACTTCCACCACCTCGCGGCCAATCATCACCACACACATGGAAGCCTAGGGCATTCTCACACGTGA

Protein

MDDDILTQSDLDENGDPKSPNSSSSKKSKSQSRDAKGGTKPRRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNSPTVPPPPAGGFPSGHYPGGLLYSHGVPYPFTGPGPYAPYFHHLAANHHHTHGSLGHSHT

Uniprot

H9JMT0   A0A212EIS1   A0A2A4IX86   A0A0N0P9W2   A0A194RQM1   A0A2H1W4J3   + More
A0A0L7KVT2   A0A182GP15   Q16J89   A0A182GHA4   A0A0L0CA57   A0A182SFV6   A0A182RPI3   A0A1B0GK36   A0A182J9M3   A0A084VQC1   A0A182N164   A0A182PQZ1   A0A182XDX8   A0A182W4G3   A0A182UDN7   A0A1S4FYW4   A0A182M1T6   A0A182QKB7   A0A182HGP3   A0A182VCS6   D6X1Q5   A0A182Y7Q1   A0A0T6BFP2   N6SRQ7   A0A1W4WS01   A0A087T5L8   A0A2P6KJT2   D1LX88   A0A1S3J0F6  

Pubmed

19121390    22118469    26354079    26227816    26483478    17510324    + More
26108605    24438588    18362917    19820115    25244985    23537049   

EMBL

BABH01016817    AGBW02014588    OWR41382.1    NWSH01005958    PCG63802.1    KQ459078    + More
KPJ03828.1    KQ459875    KPJ19610.1    ODYU01006225    SOQ47876.1    JTDY01005272    KOB67171.1    JXUM01077475    KQ563013    KXJ74636.1    CH478023    EAT34337.1    JXUM01011450    KQ560330    KXJ83007.1    JRES01000789    KNC28329.1    AJWK01022531    AJWK01022532    AJWK01022533    AJWK01022534    AJWK01022535    ATLV01015184    KE525003    KFB40165.1    AXCM01009512    AXCN02002161    APCN01005698    KQ971371    EFA10145.1    LJIG01000818    KRT86122.1    APGK01058807    APGK01058808    APGK01058809    APGK01058810    KB741292    KB632334    ENN70309.1    ERL92763.1    KK113534    KFM60407.1    MWRG01010358    PRD26567.1    GU076065    ACY92594.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053268    UP000053240    UP000037510    + More
UP000069940    UP000249989    UP000008820    UP000037069    UP000075901    UP000075900    UP000092461    UP000075880    UP000030765    UP000075884    UP000075885    UP000076407    UP000075920    UP000075902    UP000075883    UP000075886    UP000075840    UP000075903    UP000007266    UP000076408    UP000019118    UP000030742    UP000192223    UP000054359    UP000085678   

PRIDE

H9JMT0   

Pfam

PF00046   Homeodomain

Interpro

IPR009057   Homeobox-like_sf        + More
IPR020479   Homeobox_metazoa       
IPR017970   Homeobox_CS       
IPR001356   Homeobox_dom       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

H9JMT0   A0A212EIS1   A0A2A4IX86   A0A0N0P9W2   A0A194RQM1   A0A2H1W4J3   + More
A0A0L7KVT2   A0A182GP15   Q16J89   A0A182GHA4   A0A0L0CA57   A0A182SFV6   A0A182RPI3   A0A1B0GK36   A0A182J9M3   A0A084VQC1   A0A182N164   A0A182PQZ1   A0A182XDX8   A0A182W4G3   A0A182UDN7   A0A1S4FYW4   A0A182M1T6   A0A182QKB7   A0A182HGP3   A0A182VCS6   D6X1Q5   A0A182Y7Q1   A0A0T6BFP2   N6SRQ7   A0A1W4WS01   A0A087T5L8   A0A2P6KJT2   D1LX88   A0A1S3J0F6  

PDB

2ME6     E-value=5.46445e-16,     Score=201

KEGG

101740751    K09309 homeobox protein Nkx-1 | (RefSeq) homeobox protein slou

GO

GO:0043565   GO:0006355   GO:0005634   GO:0000978   GO:0003700   GO:0030154   GO:0045944   GO:0003677   GO:0008237   GO:0030126   GO:0030117   GO:0006418   GO:0003707   GO:0006281   GO:0006259  

Subcellular location

Nucleus  

Length:

166

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02973

Exp number, first 60 AAs:

0

Total prob of N-in:

0.14127

outside

1  -  166

 

 

Pi

237.241103

Theta

178.104634

Tajima's D

1.082509

CLR

0.184027

CSRT

0.68261586920654

Interpretation

Uncertain