SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15596
Pre Gene Modal
BGIBMGA010722
Annotation
PREDICTED:_facilitated_trehalose_transporter_Tret1-like_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.866
 

Sequence

CDS
ATGTCAATGGGATGGACATCACCAGTGTTGCCACAGTTGCGAGGACCCAACTCCCCACTGCCAGAACAGCCTACGCTACAGCAAGAATCCTGGATCGGCTCTCTGCTCGTTCTCGGCGGATTGATCGGCCCATTCATCACAGTGCCATTGTCAAAGCACGTTGGCCGGAGATGGCTGATTATGGGATCGAACGTGCCCCTACTACTGGGCTGGTTGCTCGCCGGAGTCACAACTAACTTGCCAACGTTGTACGTCGCGAGGTTGGCCTGGGGCTGTGCTACTGCCATGCAATTTGCGACAGTACCTATTTACATAGGAGAAATTGCCGAGGACAAAATCCGGGGAGCTCTGAGCGCGTTTTTCTTGTTGTTCATCAATATCGGCTTTTTGTTGGCCTACGCCATCGGTCCTTTCACCAGCTATTGGGGCCTCACAGCCTGTGGTGGAATTATATCCCTGTTATATCTACCGTTTTCTTGGTATTTACCAGAAACACCGTTCTTTTTGGTGTTCAAAGGTTAG
Protein
MSMGWTSPVLPQLRGPNSPLPEQPTLQQESWIGSLLVLGGLIGPFITVPLSKHVGRRWLIMGSNVPLLLGWLLAGVTTNLPTLYVARLAWGCATAMQFATVPIYIGEIAEDKIRGALSAFFLLFINIGFLLAYAIGPFTSYWGLTACGGIISLLYLPFSWYLPETPFFLVFKG

Summary

Similarity
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
EMBL
BABH01016814    KQ459078    KPJ03826.1    NWSH01000595    PCG75451.1    AGBW02014588    + More
OWR41380.1    RSAL01000221    RVE44063.1    ODYU01003431    SOQ42187.1    KQ459875    KPJ19609.1    BABH01016691    BABH01016692    BABH01016693    BABH01016694    GAMC01018654    JAB87901.1    NWSH01000916    PCG73551.1    GAMC01018656    JAB87899.1    PCG73552.1    CH916369    EDV92743.1    ODYU01003112    SOQ41455.1    KQ459601    KPI93687.1    CH940650    EDW67791.1    KRF83468.1    KRF83469.1    KQ977574    KYN01895.1    GFDG01000707    JAV18092.1    GFDG01001479    JAV17320.1    CP012526    ALC47794.1    BABH01016697    CH964272    EDW85051.1    KRG00175.1    CH933806    EDW16715.2    KRG02269.1    KRG02270.1    KZ149936    PZC77147.1    QOIP01000003    RLU25240.1    GL764900    EFZ17069.1    GL444771    EFN60596.1    GDHF01004672    JAI47642.1    ODYU01001965    SOQ38884.1    GDHF01030597    JAI21717.1    GDHF01000517    JAI51797.1    EU124608    ABV60326.1    KQ982944    KYQ48914.1    NWSH01000598    PCG75421.1    BABH01016696    KQ435851    KOX70761.1    ATLV01024580    KE525352    KFB51703.1    DS232396    EDS41069.1    KQ981965    KYN31745.1    KA646086    AFP60715.1    GFDF01007791    JAV06293.1    GFDF01007792    JAV06292.1    GL888243    EGI63964.1    GBYB01002345    JAG72112.1    GFDF01007785    JAV06299.1    GFDF01007786    JAV06298.1    GAKP01008752    GAKP01008751    JAC50200.1    GANO01003127    JAB56744.1    AJVK01011560    AGBW02012985    OWR44136.1    CM000160    EDW97802.1    KRK03978.1    KRK03979.1    JRES01000423    KNC31408.1    CM000364    EDX11800.1    OUUW01000005    SPP80251.1    CH480821    EDW55030.1    AE014297    AY118796    AAF51941.1    AAM50656.1    SPP80250.1    KQ971371    EFA10112.2    KQ976542    KYM81051.1    ADTU01015114    GGFK01000993    MBW34314.1    GGFK01000934    MBW34255.1    KQ459589    KPI97524.1    LBMM01001313    KMQ96530.1    CH479179    EDW24243.1    NNAY01000793    OXU26469.1    EDS41070.1    GL449042    EFN83323.1    KZ288338    PBC27839.1    CH954181    EDV47963.1    ADMH02000549    ETN65958.1    UFQT01000389    SSX23856.1    CM000070    EAL28092.1    KRT00434.1    GAPU01000032    JAB84596.1    GBXI01011595    GBXI01005185    JAD02697.1    JAD09107.1    ATLV01011809    KE524723    KFB36155.1    GBXI01017546    JAC96745.1    AXCM01019063    AXCN02000379    GAIX01010740    JAA81820.1    CH477763    EAT36506.1    ADMH02002130    ETN58528.1   
Pfam
PF00083   Sugar_tr        + More
PF07690   MFS_1
PF00147   Fibrinogen_C
PF05154   TM2
PF01753   zf-MYND
Interpro
IPR036259   MFS_trans_sf        + More
IPR020846   MFS_dom       
IPR005828   MFS_sugar_transport-like       
IPR003663   Sugar/inositol_transpt       
IPR005829   Sugar_transporter_CS       
IPR011701   MFS       
IPR002181   Fibrinogen_a/b/g_C_dom       
IPR020837   Fibrinogen_CS       
IPR036056   Fibrinogen-like_C       
IPR007829   TM2       
IPR002893   Znf_MYND       
SUPFAM
SSF103473   SSF103473        + More
SSF56496   SSF56496       
PDB
4LDS     E-value=6.08599e-08,     Score=131

Ontologies

Topology

Length:
173
Number of predicted TMHs:
5
Exp number of AAs in TMHs:
104.76035
Exp number, first 60 AAs:
23.18476
Total prob of N-in:
0.09031
POSSIBLE N-term signal
sequence
outside
1  -  28
TMhelix
29  -  51
inside
52  -  57
TMhelix
58  -  80
outside
81  -  83
TMhelix
84  -  106
inside
107  -  112
TMhelix
113  -  135
outside
136  -  139
TMhelix
140  -  162
inside
163  -  173
 
 

Population Genetic Test Statistics

Pi
265.477262
Theta
191.544122
Tajima's D
1.545961
CLR
0
CSRT
0.79886005699715
Interpretation
Uncertain
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