Gene

KWMTBOMO15592  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010723

Annotation

small_nuclear_ribonucleoprotein_sm_d2_[Bombyx_mori]

Location

Bomo_Chr26(-):3658616-3659498      View in EpiBrowser

Full name

Small nuclear ribonucleoprotein Sm D2       + More
Probable small nuclear ribonucleoprotein Sm D2      

Alternative Name

snRNP core protein D2

Location in the cell

Nuclear   Reliability : 2.796

CDS

ATGACCCTAGAAGAGCTATCTAAAATCGAAGAGGAAGAGTTTAGTACCGGACCTCTTTCCGTGCTCACGCAGTCAGTAAAGAACAACACACAAGTTCTGATAAATTGCCGTAACAATAAGAAACTCCTGGGTAGAGTGAAGGCTTTCGACCGGCATTGTAACATGGTATTGGAGAATGTTAAGGAAATGTGGACTGAGGTACCGAGAACTGGCAAAGGAAAGAAGGGCAAAGCTGTAAACAAGGACAAATTCATCTCCAAAATGTTCCTCCGCGGTGATTCTGTGATCTTAGTACTAAGGAATCCTCTTGCTACAGCTGCAGGGAAGTAA

Protein

MTLEELSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKGKAVNKDKFISKMFLRGDSVILVLRNPLATAAGK

Description

Required for pre-mRNA splicing. Required for snRNP biogenesis (By similarity).

Subunit

Interacts with the SMN complex.

Similarity

Belongs to the snRNP core protein family.

Keywords

Complete proteome   mRNA processing   mRNA splicing   Nucleus   Reference proteome   Ribonucleoprotein  

Feature

chain  Small nuclear ribonucleoprotein Sm D2

Uniprot

S4PGW4   A0A212FIE6   A3QVV0   A0A194RU04   H9JMH0   A0A1E1WT76   + More
A0A0N0P9V7   A0A2H1VJ16   A0A2A4IVA8   A0A0L7LPT5   A0A336MRD0   A0A336MLW6   A0A0A9Y193   A0A2P8YZ63   A0A224XPH3   A0A0P4VLF7   R4G8B8   T1HSQ6   A0A0C9RCH5   A0A2M3ZC74   A0A2M4AVD5   A0A2M4C3X1   A0A0L7RCB8   A0A154PHC9   A0A310SHI9   A0A2A3E611   A0A182FNY2   A0A1B6E1K1   E2AJ66   A0A087ZMS5   A0A026WWE6   A0A151JN53   E9J1R9   A0A151JVM5   E2C5K8   A0A158NJ78   K7ISL3   A0A067QWE7   A0A2J7Q7P2   A0A151I7C2   A0A232F041   A0A3L8D8T0   A0A2J7QXR4   E0W320   A0A2P8YEE6   E9HAP6   A0A023FF29   A0A023FT80   G3MLC9   A0A2R5LCJ9   A0A0L0BN20   B4JYD6   B7Q5F5   A0A0K8RBP5   A0A1B0BBX4   A0A3B0JDL6   A0A1A9UTL3   B4G3C0   A0A023FDV7   A0A1W4V437   B4MBN3   B4QYA4   B4KBP1   A0A3B0JCS8   Q298A9   A0A1B2AJC2   B4PVQ1   A0A0P9A149   B4I4E8   Q9VI10   A0A1Z5KX78   A0A224Z6N8   A0A131YEB2   L7M3G9   A0A131XDF6   A0A2P8YRW1   B3P2K1   A0A0M5J1Z8   A0A0P4ZYH9   A0A023EDG2   Q16UH6   A0A182T3Z9   A0A1B0CBQ6   A0A1I8P1B2   A0A1L8EGY0   T1P8H2   A0A0P5U499   A0A1A9W5Q0   A0A1B0DN66   A0A1B6GQP8   A0A182XH15   B4NHB4   A0A182NWL5   Q7Q2A9   A0A182IHA5   W8BV16   A0A034WSC1   A0A0C9QLU9   A0A0K8W6V6   A0A023ED47  

Pubmed

23622113    22118469    26354079    19121390    26227816    25401762    + More
29403074    27129103    20798317    24508170    21282665    21347285    20075255    24845553    28648823    30249741    20566863    21292972    22216098    26108605    17994087    15632085    17550304    10731132    12537572    12537569    10908584    18621711    17412918    28528879    28797301    26830274    25576852    28049606    24945155    17510324    25315136    12364791    14747013    17210077    24495485    25348373   

EMBL

GAIX01006035    JAA86525.1    AGBW02008394    OWR53513.1    DQ868529    ABK42005.1    + More
KQ459875    KPJ19601.1    BABH01016810    GDQN01000917    JAT90137.1    KQ459078    KPJ03815.1    ODYU01002840    SOQ40818.1    NWSH01007116    NWSH01003629    PCG63080.1    PCG66029.1    JTDY01000383    KOB77447.1    UFQT01002283    SSX33094.1    UFQT01001324    SSX30039.1    GBHO01020329    JAG23275.1    PYGN01000274    PSN49535.1    GFTR01002039    JAW14387.1    GDKW01001356    JAI55239.1    GAHY01001247    JAA76263.1    ACPB03006555    GBYB01004626    JAG74393.1    GGFM01005358    MBW26109.1    GGFK01011435    MBW44756.1    GGFJ01010808    MBW59949.1    KQ414617    KOC68381.1    KQ434899    KZC10884.1    KQ764145    OAD54593.1    KZ288363    PBC26924.1    GEDC01005517    JAS31781.1    GL439967    EFN66506.1    KK107078    EZA60400.1    KQ978858    KYN27926.1    GL767674    EFZ13177.1    KQ981703    KYN37440.1    GL452770    EFN76821.1    ADTU01017554    KK852869    KDR14658.1    NEVH01017441    PNF24590.1    KQ978411    KYM94099.1    NNAY01001464    OXU23887.1    QOIP01000011    RLU16701.1    NEVH01009372    PNF33377.1    DS235881    EEB20026.1    PYGN01000667    PSN42544.1    GL732612    EFX71229.1    GBBK01004330    JAC20152.1    GBBL01002334    JAC24986.1    JO842678    JO842679    JO842680    AEO34297.1    GGLE01003096    MBY07222.1    JRES01001623    KNC21387.1    CH916377    EDV90698.1    ABJB010745576    DS861322    EEC14077.1    GADI01005253    GEFM01003814    JAA68555.1    JAP71982.1    JXJN01011726    OUUW01000005    SPP80185.1    CH479179    EDW24302.1    GBBK01004331    JAC20151.1    CH940656    EDW58504.2    CM000364    EDX11861.1    CH933806    EDW14718.1    SPP80184.1    CM000070    EAL28046.3    KX531442    ANY27252.1    CM000160    EDW97860.2    CH902617    KPU80429.1    CH480821    EDW55091.1    AE014297    AY069315    AAL39460.1    GFJQ02007271    JAV99698.1    GFPF01011795    MAA22941.1    GEDV01011310    JAP77247.1    GACK01006469    JAA58565.1    GEFH01004960    JAP63621.1    PYGN01000402    PSN46977.1    CH954181    EDV48023.1    CP012526    ALC46811.1    GDIP01209555    JAJ13847.1    GAPW01006135    JAC07463.1    CH477622    EAT38161.1    AJWK01005764    GFDG01000809    JAV17990.1    KA644942    AFP59571.1    GDIP01118313    JAL85401.1    AJVK01017334    GECZ01005040    JAS64729.1    CH964272    EDW84590.2    AAAB01008978    EAA13684.2    APCN01002733    GAMC01003538    JAC03018.1    GAKP01002294    JAC56658.1    GBYB01004529    JAG74296.1    GDHF01014153    GDHF01005458    JAI38161.1    JAI46856.1    GAPW01006281    JAC07317.1   

Proteomes

UP000007151    UP000053240    UP000005204    UP000053268    UP000218220    UP000037510    + More
UP000245037    UP000015103    UP000053825    UP000076502    UP000242457    UP000069272    UP000000311    UP000005203    UP000053097    UP000078492    UP000078541    UP000008237    UP000005205    UP000002358    UP000027135    UP000235965    UP000078542    UP000215335    UP000279307    UP000009046    UP000000305    UP000037069    UP000001070    UP000001555    UP000092460    UP000268350    UP000078200    UP000008744    UP000192221    UP000008792    UP000000304    UP000009192    UP000001819    UP000002282    UP000007801    UP000001292    UP000000803    UP000008711    UP000092553    UP000008820    UP000075901    UP000092461    UP000095300    UP000095301    UP000091820    UP000092462    UP000076407    UP000007798    UP000075884    UP000007062    UP000075840   

PRIDE

A3QVV0    H9JMH0    Q9VI10   

Pfam

PF01423   LSM        + More
PF02320   UCR_hinge

Interpro

IPR010920   LSM_dom_sf        + More
IPR027248   Sm_D2       
IPR001163   LSM_dom_euk/arc       
IPR023184   Ubol_cytC_Rdtase_hinge_dom       
IPR036811   Ubol_cytC_Rdtase_hinge_dom_sf       

SUPFAM

SSF50182   SSF50182        + More
SSF81531   SSF81531       

Gene 3D

1.10.287.20    

CDD

cd01720  Sm_D2

ProteinModelPortal

S4PGW4   A0A212FIE6   A3QVV0   A0A194RU04   H9JMH0   A0A1E1WT76   + More
A0A0N0P9V7   A0A2H1VJ16   A0A2A4IVA8   A0A0L7LPT5   A0A336MRD0   A0A336MLW6   A0A0A9Y193   A0A2P8YZ63   A0A224XPH3   A0A0P4VLF7   R4G8B8   T1HSQ6   A0A0C9RCH5   A0A2M3ZC74   A0A2M4AVD5   A0A2M4C3X1   A0A0L7RCB8   A0A154PHC9   A0A310SHI9   A0A2A3E611   A0A182FNY2   A0A1B6E1K1   E2AJ66   A0A087ZMS5   A0A026WWE6   A0A151JN53   E9J1R9   A0A151JVM5   E2C5K8   A0A158NJ78   K7ISL3   A0A067QWE7   A0A2J7Q7P2   A0A151I7C2   A0A232F041   A0A3L8D8T0   A0A2J7QXR4   E0W320   A0A2P8YEE6   E9HAP6   A0A023FF29   A0A023FT80   G3MLC9   A0A2R5LCJ9   A0A0L0BN20   B4JYD6   B7Q5F5   A0A0K8RBP5   A0A1B0BBX4   A0A3B0JDL6   A0A1A9UTL3   B4G3C0   A0A023FDV7   A0A1W4V437   B4MBN3   B4QYA4   B4KBP1   A0A3B0JCS8   Q298A9   A0A1B2AJC2   B4PVQ1   A0A0P9A149   B4I4E8   Q9VI10   A0A1Z5KX78   A0A224Z6N8   A0A131YEB2   L7M3G9   A0A131XDF6   A0A2P8YRW1   B3P2K1   A0A0M5J1Z8   A0A0P4ZYH9   A0A023EDG2   Q16UH6   A0A182T3Z9   A0A1B0CBQ6   A0A1I8P1B2   A0A1L8EGY0   T1P8H2   A0A0P5U499   A0A1A9W5Q0   A0A1B0DN66   A0A1B6GQP8   A0A182XH15   B4NHB4   A0A182NWL5   Q7Q2A9   A0A182IHA5   W8BV16   A0A034WSC1   A0A0C9QLU9   A0A0K8W6V6   A0A023ED47  

PDB

3JB9     E-value=1.01692e-31,     Score=334

KEGG

100036587    K11096 small nuclear ribonucleoprotein D2 | (RefSeq) small nuclear ribonucleoprotein sm d2

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0005685   GO:0000387   GO:0071013   GO:0046540   GO:0005682   GO:0005686   GO:0071011   GO:0000398   GO:0005681   GO:0003723   GO:0030532   GO:0000278   GO:0008380  

PANTHER

PTHR12777  

Subcellular location

Nucleus  

Length:

109

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01042

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.11839

outside

1  -  109

 

 

Pi

296.337896

Theta

202.199577

Tajima's D

1.557543

CLR

0

CSRT

0.799110044497775

Interpretation

Uncertain