Gene

KWMTBOMO15588  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010724

Annotation

PREDICTED:_charged_multivesicular_body_protein_3_[Plutella_xylostella]

Location

Bomo_Chr26(-):3450267-3454344      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.75 Nuclear   Reliability : 2.365

CDS

ATGGGCCTTTTCGGTAAATCCCCAGAGCGCAACCCTAAAGAAATGGTAAATGAATGGTCGCATAAACTTCGCAAAGAAGGATACAATTTGGACAGACAAGTTAGAGCTATCCAAAGAGAAGAAGAAAAAATTAAACGATCACTGAAAGAAGCAGCTACTAAAAACGATAAACAAGTATGCACTATACTAGCAAAAGAAATCATCAGATCCAGGAAAGCAATCAATAAAATATACACAAGTAAAGCACATCTCAACTCAGTACAATTACAAATGAAGAATCAATTGGCTACCTTAAGAGTTGCTGGATCGTTGCAGAAGTCAACAGAGGTGATGCAAGCAATGCAAGCTCTGTTACGTCTCCCAGAAGTAGCGGCTACGATGCAGGAGCTGAGCAAGGAAATGATGAAAGCTGGTATCATAGAGGAGATGCTGGACGAAACCATGTCCGGGATGGAAGATGAAGAGGAAATGGAAGAAGCAGCGCAAAGTGAAGTTGATAAGGTTCTATGGGAATTAACTCAAGGAAAATTAGGAGAAGCGCCGGCACCGCCCACATCTGTCGGAGCACCGTCCACCAGCCAACAAGAAGAGGAACCAGTCCCGGAGCCTGACGAAAGCGAACTGGACGAAATGCAGTCTAGATTAGAATCATTGCGGTCTTAG

Protein

MGLFGKSPERNPKEMVNEWSHKLRKEGYNLDRQVRAIQREEEKIKRSLKEAATKNDKQVCTILAKEIIRSRKAINKIYTSKAHLNSVQLQMKNQLATLRVAGSLQKSTEVMQAMQALLRLPEVAATMQELSKEMMKAGIIEEMLDETMSGMEDEEEMEEAAQSEVDKVLWELTQGKLGEAPAPPTSVGAPSTSQQEEEPVPEPDESELDEMQSRLESLRS

Uniprot

A0A1E1W5M1   A0A194RQL6   A0A1V0JHV4   A0A0N1PF08   I4DKD7   A0A2A4JUK8   + More
A0A212EIR8   A0A2M4BZ49   A0A2M4AKR4   A0A2M3Z7N0   A0A1Y1KT70   A0A067RG49   A0A1W4WMF6   W5J6Q6   A0A182FL05   A0A182KFS0   A0A182NSJ0   A0A182VS48   A0A2J7PYU5   T1DG90   A0A182R892   A0A182QQS7   D6X057   N6TGA5   A0A182YLL9   Q06DJ7   A0A182TWV2   A0A182WW00   Q7QH42   A0A182P088   A0A182UQ78   A0A084VDU2   A0A0N1ITF9   A0A2M4BZQ8   A0A1L8DVS5   U5EX10   A0A182MPT5   A0A088AF24   A0A195FKQ0   E2AML3   A0A195BAQ3   A0A158NU97   F4WR85   Q171V6   A0A151JCE6   A0A023EK15   A0A069DQ93   A0A0J7KPB8   B4PTQ5   A0A151IQK9   B4K985   A0A0M4EP29   A0A336M1F5   Q295E5   A0A232FN59   A0A0P4VL65   T1IEU2   B4GM56   A0A182INF8   A0A0A1WRL9   A0A0C9QDW5   W8CBW2   A0A026WRE1   A0A0K8WHU3   A0A034W6U4   K7INY3   A0A1L8DVM1   B4LYX0   E2B9G8   Q9VN02   A0A3B0KSV6   A0A1W4VL71   B4QUZ9   B4I3L8   B3P1Y7   A0A0A9WH18   T1GBQ4   B0WAJ4   B4JV71   B3LXZ9   A0A2M4AMZ7   A0A023F592   A0A0V0G921   A0A0K8UAL6   A0A1Q3FF52   B4N924   A0A1B6JEX8   A0A1Q3FBK3   A0A1I8NV40   A0A1B6F0T6   A0A154PBN0   E0VVA7   A0A1I8MIU2   A0A1J1J485   A0A0L0CJM6   A0A162PB75   A0A146LBE1   A0A1B0FFU9   A0A1A9YQ12   A0A293MW15  

Pubmed

26354079    22651552    22118469    28004739    24845553    20920257    + More
23761445    18362917    19820115    23537049    25244985    17244545    12364791    14747013    17210077    24438588    20798317    21347285    21719571    17510324    24945155    26483478    26334808    17994087    17550304    15632085    28648823    27129103    25830018    24495485    24508170    30249741    25348373    20075255    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25401762    25474469    20566863    25315136    26108605    26823975   

EMBL

GDQN01008800    JAT82254.1    KQ459875    KPJ19605.1    KY694524    ODYU01000194    + More
ARD08865.1    SOQ34575.1    KQ459078    KPJ03821.1    AK401755    BAM18377.1    NWSH01000595    PCG75456.1    AGBW02014588    OWR41375.1    GGFJ01009199    MBW58340.1    GGFK01008052    MBW41373.1    GGFM01003760    MBW24511.1    GEZM01074367    JAV64583.1    KK852496    KDR22737.1    ADMH02002130    ETN58540.1    NEVH01020342    PNF21511.1    GAMD01002851    JAA98739.1    AXCN02000234    KQ971371    EFA10075.1    APGK01028591    KB740694    KI208145    KI210265    ENN79434.1    ERL95804.1    ERL96217.1    DQ910328    ABI83750.1    AAAB01008820    EAA05411.2    ATLV01011796    KE524723    KFB36136.1    KQ435821    KOX72351.1    GGFJ01009371    MBW58512.1    GFDF01003552    JAV10532.1    GANO01001175    JAB58696.1    AXCM01002011    KQ981512    KYN40837.1    GL440824    EFN65333.1    KQ976532    KYM81618.1    ADTU01026326    GL888284    EGI63302.1    CH477445    EAT40780.1    KQ979048    KYN23215.1    JXUM01059133    GAPW01004130    KQ562037    JAC09468.1    KXJ76844.1    GBGD01002844    JAC86045.1    LBMM01004764    KMQ92101.1    CM000160    EDW95638.1    KQ976780    KYN08400.1    CH933806    EDW15517.1    CP012526    ALC46538.1    UFQT01000413    UFQT01000418    SSX24075.1    SSX24140.1    CM000070    EAL28767.1    NNAY01000018    OXU31898.1    GDKW01000740    JAI55855.1    ACPB03020181    CH479185    EDW37930.1    GBXI01012588    JAD01704.1    GBYB01001514    JAG71281.1    GAMC01004456    JAC02100.1    KK107119    QOIP01000009    EZA58548.1    RLU18271.1    GDHF01001879    JAI50435.1    GAKP01009098    GAKP01009097    JAC49855.1    GFDF01003602    JAV10482.1    CH940650    EDW68073.1    GL446527    EFN87651.1    AE014297    AY058381    AAF52150.1    AAL13610.1    ALI30525.1    OUUW01000014    SPP88301.1    CM000364    EDX11580.1    CH480821    EDW54811.1    CH954181    EDV47760.1    GBHO01039472    GBHO01039471    GBHO01039469    GBRD01002433    GBRD01002432    JAG04132.1    JAG04133.1    JAG04135.1    JAG63388.1    CAQQ02141285    DS231872    EDS41417.1    CH916374    EDV91391.1    CH902617    EDV42855.1    GGFK01008833    MBW42154.1    GBBI01002449    JAC16263.1    GECL01002237    JAP03887.1    GDHF01028681    JAI23633.1    GFDL01008866    JAV26179.1    CH964232    EDW81571.1    GECU01010009    JAS97697.1    GFDL01010167    JAV24878.1    GECZ01025949    GECZ01014506    JAS43820.1    JAS55263.1    KQ434851    KZC08600.1    DS235806    EEB17313.1    CVRI01000070    CRL07221.1    JRES01000310    KNC32402.1    LRGB01000512    KZS18696.1    GDHC01014123    JAQ04506.1    CCAG010004727    GFWV01020286    MAA45014.1   

Proteomes

UP000053240    UP000053268    UP000218220    UP000007151    UP000027135    UP000192223    + More
UP000000673    UP000069272    UP000075881    UP000075884    UP000075920    UP000235965    UP000075900    UP000075886    UP000007266    UP000019118    UP000030742    UP000076408    UP000075902    UP000076407    UP000007062    UP000075885    UP000075903    UP000030765    UP000053105    UP000075883    UP000005203    UP000078541    UP000000311    UP000078540    UP000005205    UP000007755    UP000008820    UP000078492    UP000069940    UP000249989    UP000036403    UP000002282    UP000078542    UP000009192    UP000092553    UP000001819    UP000215335    UP000015103    UP000008744    UP000075880    UP000053097    UP000279307    UP000002358    UP000008792    UP000008237    UP000000803    UP000268350    UP000192221    UP000000304    UP000001292    UP000008711    UP000015102    UP000002320    UP000001070    UP000007801    UP000007798    UP000095300    UP000076502    UP000009046    UP000095301    UP000183832    UP000037069    UP000076858    UP000092444    UP000092443   

Pfam

PF03357   Snf7

Interpro

IPR005024   Snf7_fam       

ProteinModelPortal

A0A1E1W5M1   A0A194RQL6   A0A1V0JHV4   A0A0N1PF08   I4DKD7   A0A2A4JUK8   + More
A0A212EIR8   A0A2M4BZ49   A0A2M4AKR4   A0A2M3Z7N0   A0A1Y1KT70   A0A067RG49   A0A1W4WMF6   W5J6Q6   A0A182FL05   A0A182KFS0   A0A182NSJ0   A0A182VS48   A0A2J7PYU5   T1DG90   A0A182R892   A0A182QQS7   D6X057   N6TGA5   A0A182YLL9   Q06DJ7   A0A182TWV2   A0A182WW00   Q7QH42   A0A182P088   A0A182UQ78   A0A084VDU2   A0A0N1ITF9   A0A2M4BZQ8   A0A1L8DVS5   U5EX10   A0A182MPT5   A0A088AF24   A0A195FKQ0   E2AML3   A0A195BAQ3   A0A158NU97   F4WR85   Q171V6   A0A151JCE6   A0A023EK15   A0A069DQ93   A0A0J7KPB8   B4PTQ5   A0A151IQK9   B4K985   A0A0M4EP29   A0A336M1F5   Q295E5   A0A232FN59   A0A0P4VL65   T1IEU2   B4GM56   A0A182INF8   A0A0A1WRL9   A0A0C9QDW5   W8CBW2   A0A026WRE1   A0A0K8WHU3   A0A034W6U4   K7INY3   A0A1L8DVM1   B4LYX0   E2B9G8   Q9VN02   A0A3B0KSV6   A0A1W4VL71   B4QUZ9   B4I3L8   B3P1Y7   A0A0A9WH18   T1GBQ4   B0WAJ4   B4JV71   B3LXZ9   A0A2M4AMZ7   A0A023F592   A0A0V0G921   A0A0K8UAL6   A0A1Q3FF52   B4N924   A0A1B6JEX8   A0A1Q3FBK3   A0A1I8NV40   A0A1B6F0T6   A0A154PBN0   E0VVA7   A0A1I8MIU2   A0A1J1J485   A0A0L0CJM6   A0A162PB75   A0A146LBE1   A0A1B0FFU9   A0A1A9YQ12   A0A293MW15  

PDB

3FRT     E-value=4.23198e-45,     Score=454

KEGG

101740115    K12193 charged multivesicular body protein 3 | (RefSeq) Vps24; charged multivesicular body protein 3

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0007034   GO:0005771   GO:0000815   GO:0045324   GO:0015031   GO:0032509   GO:0070676   GO:0003723   GO:0006886   GO:0016192   GO:0030126   GO:0030117   GO:0006418   GO:0003707   GO:0006281   GO:0006259  

Length:

220

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01929

outside

1  -  220

 

 

Pi

236.809492

Theta

162.429738

Tajima's D

1.507206

CLR

0.082212

CSRT

0.789010549472526

Interpretation

Uncertain