Gene

KWMTBOMO15587

Pre Gene Modal

BGIBMGA010828

Annotation

PREDICTED:_xenotropic_and_polytropic_retrovirus_receptor_1_[Papilio_xuthus]

Location

Bomo_Chr26(+):3434745-3449617      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.92

CDS

ATGAAGAAACTAAGAGTGCCACCTCTCGGGGAGCAGCAGAGTCCGTGGACCACATTCAAAGTTGGATTGTTTTCAGGGTCATTTATAGTATTAATCATCTCAGTTGTTTTGTCAGCTCTATTTCACGAAGGTGGATCGAGCGATATCAAAACAGCCATTCGATTATACAGAGGTCCGTTCCTCTTGGTCGAGTTCATATTTTTGATAGGCATTAACGTATACGGATGGCGGTCGTCAGGAGTGAACCACGTGCTAATATTCGAACTAGACCCAAGGAATCACTTGTCCGAGCAGCATTTAATGGAATTAGCGGCAATTTTCGGTGTCGTATGGGCGCTTAGTATATTAAGTTTTATATACAGCGCGAGCCTTAGCATACCGCCTTTTGTGAATCCCCTAGCGCTGGTTGTGATAATGCTTGCCTTCTTGATGAACCCATTCAAGGTTTTCCGGCATGAAGCCAGATTCTGGTTTTTGAGGATATGTGGTCGGATCCTCGCAGCGCCATTCCTGCCCGTGCTATTCGCCGATTTCTGGCTGGCCGACCAATGGAATTCGTTCACGGCCGCCTTCGTAGACTTTCACTATCTGATCTCTTTCTACGTGGCGGGCGGTGATTGGTTCAAAGTTAATAACGAGTTCGAAGCGGCCCAATGGTTCGTGTTGAGCCGCGCGGTCGTGAGCGTGGTCCCGGCCTGGACCCGGTTCTGGCAGTGTCTGCGCCGGTACCGGGACAGCCGGGAGGCGTTCCCGCATCTCGTCAACGCCGGGAAGTACTCGACCACGTTTTTCGTGGTTCTATTCGCTACGTTGAAGACTTTGAACAATCATAAATATCCAGATTCGTCTTTCGACAATCCGTTTCTGTACGCGTGGTTCGCGTGTCAGCTCGTGTCGTCCGTGTACACGTACACGTGGGACGTGAAAATGGACTGGGGTCTGTTCAGCTGTGGGCCCAGCGCTGAGAATAAGTTCCTCAGGGAGGAGATCGTCTACAGTCCGGGGTCTTACTACTTTGCGATAGTAGAGGATTTCGTATTACGTTTCATATGGACTGTTTCGTTCGTTCTCACGGAGAATAAATATGTCGGCTCCGAAACTATGACCTCCATATTGGCTCCCCTGGAAGTTTTCAGACGTTTCATCTGGAATTTCTTCCGTCTCGAGAACGAGCACCTGAACAACTGCGGCAAGTTCCGCGCCGTCCGGGACATCTCCGTGGCGCCCCTGGATTCTTCCGACCAGGCCGACATCATCCGGATGATGGACCATCCCGATGGAGTTATAAACAGATTAACGAAGAAGAAAAACGCAAAAAAGACAAAGGAAATCGACCGTCGGCCGCTGCTGAAGAAGGAATCGATACAAGATCTTCAATTAGAACTCGACTTGTCCTCCAAAATGATGTAA

Protein

MKKLRVPPLGEQQSPWTTFKVGLFSGSFIVLIISVVLSALFHEGGSSDIKTAIRLYRGPFLLVEFIFLIGINVYGWRSSGVNHVLIFELDPRNHLSEQHLMELAAIFGVVWALSILSFIYSASLSIPPFVNPLALVVIMLAFLMNPFKVFRHEARFWFLRICGRILAAPFLPVLFADFWLADQWNSFTAAFVDFHYLISFYVAGGDWFKVNNEFEAAQWFVLSRAVVSVVPAWTRFWQCLRRYRDSREAFPHLVNAGKYSTTFFVVLFATLKTLNNHKYPDSSFDNPFLYAWFACQLVSSVYTYTWDVKMDWGLFSCGPSAENKFLREEIVYSPGSYYFAIVEDFVLRFIWTVSFVLTENKYVGSETMTSILAPLEVFRRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDHPDGVINRLTKKKNAKKTKEIDRRPLLKKESIQDLQLELDLSSKMM

Uniprot

H9JMS5   A0A1E1WMX8   A0A2H1V2S5   A0A2A4JTU4   A0A212EIQ9   A0A194RU09   + More
A0A1Y1L9U8   B0WSZ6   A0A2J7QTZ5   A0A1Q3F8B0   A0A1Q3F8F7   A0A182GIC7   Q16QS0   A0A2J7QTY5   A0A0A1X828   A0A0K8TWG6   A0A182HDB8   A0A2J7QTZ3   A0A067QH79   A0A182J1K0   A0A084WFL5   A0A182MV72   A0A182RKP9   A0A182N0N0   A0A182QY00   A0A182YH08   A0A182T7I1   A0A0C9QUC2   A0A182VD08   Q7QEH3   A0A1W4XHM7   T1PAF2   A0A1I8Q6F8   B4JJ94   A0A182KED6   B4NCH8   A0A1B6CLC4   A0A336MAQ2   B4L299   A0A1A9YKA6   A0A0M5JE02   A0A0J7L795   W8BL46   B3NTA1   A0A0N1IAA6   A0A1B6GBR3   B4M6R4   D7EJG4   B4Q2N3   A0A1B6IVX8   A0A158NFD2   A0A1A9W6A3   A0A1W4UNM9   F4WUI9   A0A1B0FG65   A0A3B0J8A2   A0A2A3E3H5   A0A087ZYJ9   K7IW66   Q29H73   A0A1A9V6M3   A0A1B0AXR1   N6U276   A0A1J1IXE6   A0A3L8DGJ9   E2A6B8   A0A1B0A5H5   A0A232FDK4   A0A3B0JD69   A0A2M4BG97   A0A2M4AJ02   A0A067QY66   Q9VWZ2   A0A1B0CW89   A0A2M3ZH92   A0A2J7PCB6   A0A182FJX0   W5J9P8   A0A1B6J659   A0A023F4Q6   A0A182W5W8   A0A1Y1L9W9   A0A1L8DUN1   A0A1L8DUM5   A0A1B6D1A0   A0A1B6CDV4   A0A1D2N4I0   A0A226ELL4   T1HVP6   E0W1Q8   T1JMQ6   A0A023F535   T1I243   D6WFX6   A0A182Q5C0   A0A084WKL4   A0A1W4X7G3   A0A182JZV7   A0A158NT11   A0A0K8VFF5  

Pubmed

19121390    22118469    26354079    28004739    26483478    17510324    + More
25830018    24845553    24438588    25244985    12364791    14747013    17210077    25315136    17994087    18057021    24495485    18362917    19820115    17550304    21347285    21719571    20075255    15632085    23185243    23537049    30249741    20798317    28648823    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20920257    23761445    25474469    27289101    20566863   

EMBL

BABH01016797    BABH01016798    GDQN01002700    JAT88354.1    ODYU01000194    SOQ34574.1    + More
NWSH01000595    PCG75455.1    AGBW02014588    OWR41376.1    KQ459875    KPJ19606.1    GEZM01061507    GEZM01061506    JAV70423.1    DS232078    EDS34129.1    NEVH01011192    PNF32043.1    GFDL01011269    JAV23776.1    GFDL01011228    JAV23817.1    JXUM01065729    JXUM01065730    JXUM01065731    JXUM01065732    JXUM01065733    JXUM01065734    JXUM01065735    JXUM01065736    CH477736    EAT36732.1    PNF32047.1    GBXI01006823    GBXI01006487    JAD07469.1    JAD07805.1    GDHF01033515    GDHF01024258    JAI18799.1    JAI28056.1    JXUM01034121    JXUM01034122    JXUM01034123    KQ561012    KXJ80041.1    PNF32044.1    KK853424    KDR07686.1    ATLV01023372    KE525342    KFB49009.1    AXCM01000747    AXCN02002234    GBYB01007349    GBYB01008920    JAG77116.1    JAG78687.1    AAAB01008847    EAA06862.3    KA645674    AFP60303.1    CH916370    EDV99646.1    CH964239    EDW82537.1    GEDC01023048    JAS14250.1    UFQT01000315    SSX23118.1    CH933810    EDW07760.1    KRF94197.1    KRF94198.1    KRF94199.1    CP012528    ALC49868.1    LBMM01000318    KMR01389.1    GAMC01016196    JAB90359.1    CH954180    EDV46552.1    KQS30032.1    KQ459078    KPJ03822.1    GECZ01009890    JAS59879.1    CH940653    EDW62481.1    KRF80678.1    DS497704    EFA12730.1    CM000162    EDX02674.1    KRK06911.1    GECU01016706    JAS91000.1    ADTU01014274    GL888365    EGI62154.1    CCAG010014756    OUUW01000003    SPP78544.1    KZ288400    PBC26303.1    CH379064    EAL31885.1    KRT06642.1    KRT06643.1    KRT06644.1    JXJN01005341    APGK01042726    KB741007    KB630653    KB631811    ENN75640.1    ERL83766.1    ERL86361.1    CVRI01000063    CRL04244.1    QOIP01000009    RLU19039.1    GL437123    EFN71003.1    NNAY01000414    OXU28573.1    SPP78543.1    GGFJ01002921    MBW52062.1    GGFK01007430    MBW40751.1    KK853117    KDR11153.1    AE014298    AY051791    AAF48793.2    AAK93215.1    AJWK01032013    AJWK01032014    AJWK01032015    AJWK01032016    AJWK01032017    AJWK01032018    AJWK01032019    GGFM01007128    MBW27879.1    NEVH01027063    PNF13968.1    ADMH02001869    ETN60726.1    GECU01013048    JAS94658.1    GBBI01002734    JAC15978.1    GEZM01061505    JAV70424.1    GFDF01003943    JAV10141.1    GFDF01003942    JAV10142.1    GEDC01017844    JAS19454.1    GEDC01025666    JAS11632.1    LJIJ01000228    ODN00179.1    LNIX01000003    OXA58108.1    ACPB03010092    DS235873    EEB19640.1    JH431929    GBBI01002553    JAC16159.1    ACPB03000284    KQ971328    EEZ99778.1    AXCN02000985    ATLV01024126    KE525349    KFB50758.1    ADTU01025470    GDHF01014630    JAI37684.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000002320    UP000235965    + More
UP000069940    UP000008820    UP000249989    UP000027135    UP000075880    UP000030765    UP000075883    UP000075900    UP000075884    UP000075886    UP000076408    UP000075901    UP000075903    UP000007062    UP000192223    UP000095301    UP000095300    UP000001070    UP000075881    UP000007798    UP000009192    UP000092443    UP000092553    UP000036403    UP000008711    UP000053268    UP000008792    UP000007266    UP000002282    UP000005205    UP000091820    UP000192221    UP000007755    UP000092444    UP000268350    UP000242457    UP000005203    UP000002358    UP000001819    UP000078200    UP000092460    UP000019118    UP000030742    UP000183832    UP000279307    UP000000311    UP000092445    UP000215335    UP000000803    UP000092461    UP000069272    UP000000673    UP000075920    UP000094527    UP000198287    UP000015103    UP000009046   

PRIDE

H9JMS5    Q9VWZ2   

Pfam

PF03124   EXS        + More
PF03105   SPX
PF08777   RRM_3
PF01284   MARVEL
PF13638   PIN_4
PF01161   PBP
PF00076   RRM_1
PF05383   La

Interpro

IPR004342   EXS_C        + More
IPR004331   SPX_dom       
IPR036388   WH-like_DNA-bd_sf       
IPR035810   PEBP_euk       
IPR036610   PEBP-like_sf       
IPR008253   Marvel       
IPR036390   WH_DNA-bd_sf       
IPR035979   RBD_domain_sf       
IPR006630   La_HTH       
IPR002344   Lupus_La       
IPR008914   PEBP       
IPR034910   LARP7_RRM2       
IPR014886   La_RRM       
IPR029060   PIN-like_dom_sf       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR002716   PIN_dom       

SUPFAM

SSF46785   SSF46785        + More
SSF49777   SSF49777       
SSF88723   SSF88723       
SSF54928   SSF54928       

Gene 3D

1.10.10.10     3.30.70.330     3.90.280.10    

CDD

cd00866  PEBP_euk
cd12542  RRM2_LARP7

ProteinModelPortal

H9JMS5   A0A1E1WMX8   A0A2H1V2S5   A0A2A4JTU4   A0A212EIQ9   A0A194RU09   + More
A0A1Y1L9U8   B0WSZ6   A0A2J7QTZ5   A0A1Q3F8B0   A0A1Q3F8F7   A0A182GIC7   Q16QS0   A0A2J7QTY5   A0A0A1X828   A0A0K8TWG6   A0A182HDB8   A0A2J7QTZ3   A0A067QH79   A0A182J1K0   A0A084WFL5   A0A182MV72   A0A182RKP9   A0A182N0N0   A0A182QY00   A0A182YH08   A0A182T7I1   A0A0C9QUC2   A0A182VD08   Q7QEH3   A0A1W4XHM7   T1PAF2   A0A1I8Q6F8   B4JJ94   A0A182KED6   B4NCH8   A0A1B6CLC4   A0A336MAQ2   B4L299   A0A1A9YKA6   A0A0M5JE02   A0A0J7L795   W8BL46   B3NTA1   A0A0N1IAA6   A0A1B6GBR3   B4M6R4   D7EJG4   B4Q2N3   A0A1B6IVX8   A0A158NFD2   A0A1A9W6A3   A0A1W4UNM9   F4WUI9   A0A1B0FG65   A0A3B0J8A2   A0A2A3E3H5   A0A087ZYJ9   K7IW66   Q29H73   A0A1A9V6M3   A0A1B0AXR1   N6U276   A0A1J1IXE6   A0A3L8DGJ9   E2A6B8   A0A1B0A5H5   A0A232FDK4   A0A3B0JD69   A0A2M4BG97   A0A2M4AJ02   A0A067QY66   Q9VWZ2   A0A1B0CW89   A0A2M3ZH92   A0A2J7PCB6   A0A182FJX0   W5J9P8   A0A1B6J659   A0A023F4Q6   A0A182W5W8   A0A1Y1L9W9   A0A1L8DUN1   A0A1L8DUM5   A0A1B6D1A0   A0A1B6CDV4   A0A1D2N4I0   A0A226ELL4   T1HVP6   E0W1Q8   T1JMQ6   A0A023F535   T1I243   D6WFX6   A0A182Q5C0   A0A084WKL4   A0A1W4X7G3   A0A182JZV7   A0A158NT11   A0A0K8VFF5  

KEGG

101739894    no KO assigned | (RefSeq) xenotropic and polytropic retrovirus receptor 1

GO

GO:0016021   GO:0005886   GO:0015114   GO:0006817   GO:0016036   GO:0000822   GO:0005794   GO:0003723   GO:1990904   GO:0006396   GO:0005634   GO:0006886   GO:0016192   GO:0030126   GO:0030117   GO:0006418   GO:0003707   GO:0006281   GO:0006259  

Length:

469

Number of predicted TMHs:

5

Exp number of AAs in TMHs:

166.91952

Exp number, first 60 AAs:

26.74411

Total prob of N-in:

0.94300

POSSIBLE N-term signal

sequence

inside

1  -  20

TMhelix

21  -  43

outside

44  -  52

TMhelix

53  -  75

inside

76  -  101

TMhelix

102  -  124

outside

125  -  127

TMhelix

128  -  150

inside

151  -  156

TMhelix

157  -  179

outside

180  -  469

 

 

Pi

231.820395

Theta

176.17245

Tajima's D

1.208457

CLR

0.478395

CSRT

0.713514324283786

Interpretation

Uncertain