Gene

KWMTBOMO15585  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010827

Annotation

PREDICTED:_exosome_complex_component_CSL4_[Amyelois_transitella]

Location

Bomo_Chr26(+):3410285-3411753      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.953 Nuclear   Reliability : 1.365

CDS

ATGAATTTGGAAGAAAAAATAAAAGAAATAGGTTCAATATGTATTCCTGGAATGCGACTGAGTTTATCAAACAAAGACAACGTATCAGGGCCGGGAACCTATGAATTGAAAGGATATATTTATGCGGCTTTAGCTGGAATCTTGAAAACAGAAGAGGATGAAAACACCAAAGCTAATATAATTTCAGTAGAAAGTTCAAGAACACCAAGTGTTTTACCCAACACAGGTGACATAGTAACCGCAAAAGTAACAGTTGTAAATCCAAGAACTGTACAATGCCTAATCCTCTGTGTTGGCCCTTCAGTACTTGTTAGAATGTACAAAGGAATATTAAAAAAAGAAGATATAAAGGCAACAGAGAAAGACAGAGTTGATCCATATAAATGTTTTAGACCTGGAGATATTATACTAGCTAGAGTTTTACCAATGACGGAAATCCACTGGTACCAATTATCGACTGCAGAAAATGAACTGGGAGTTGTTATCGCTACAGCTGAAGGATCACCGCAAGGGGTCAGCATGGTACCAATAAGCTGGTCAGAGATGCAGTGCCCTAAAACTCTAGTCAAAGAACCAAGGAAAGTTGCTAGAGTTATACCGGAAAATATTAATCAATCACTCTTTCCAGTTCATTCAAAGCAAGACAATCATCACACTGATAAATAA

Protein

MNLEEKIKEIGSICIPGMRLSLSNKDNVSGPGTYELKGYIYAALAGILKTEEDENTKANIISVESSRTPSVLPNTGDIVTAKVTVVNPRTVQCLILCVGPSVLVRMYKGILKKEDIKATEKDRVDPYKCFRPGDIILARVLPMTEIHWYQLSTAENELGVVIATAEGSPQGVSMVPISWSEMQCPKTLVKEPRKVARVIPENINQSLFPVHSKQDNHHTDK

Uniprot

H9JMS4   A0A2A4JV00   A0A2H1VMY6   A0A3S2P7Z3   A0A212EIQ7   A0A194RQ40   + More
A0A0N1PH92   S4PWS8   A0A1E1W2L0   A0A0L7L5U1   A0A0J7NZS8   A0A0C9R9V2   A0A0L7QR08   A0A195BDN5   A0A2A3EF17   A0A088AMT3   F4X368   A0A151IVM0   A0A1B6DSQ0   E9IWP2   A0A195FFV5   A0A1I8N845   K7INT2   A0A154P3Q6   A0A151IKZ5   A0A151WEM5   A0A1I8QEJ0   E2BNL8   A0A1W4XTC0   A0A0L0C958   A0A1B6FMM8   A0A1B6M6N5   D2A4N8   A0A1B6BWZ1   A0A1B6JZ23   A0A0N0BK12   A0A0K8TMN9   A0A1B0CX20   A0A2J7PYV6   A0A232FG08   A0A034WAV3   A0A336KJ09   W8BNP8   E2A274   A0A0K8V296   A0A1L8DXN5   A0A336L1L9   A0A1A9WDC8   A0A1Q3F0Z3   A0A1A9W6H9   B0W7Q9   A0A067RQ47   V5IA96   A0A1A9Y018   A0A1B0B863   A0A1J1IQ87   U5EWW3   U4U4C1   J3JXZ2   A0A1B0GAP7   N6U0S2   E9GPY0   A0A1A9Z1Y9   A0A1A9VDA0   A0A023ELX8   A0A0A9YW12   A0A182H936   A0A1S4EZA3   Q1HQF1   Q17KN0   A0A224XU43   A0A0P4VVI7   A0A1Y1KP95   A0A182LY86   A0A0P5FAI3   V3ZVE0   A0A0P4X8X8   A0A2M4C0T3   A0A182Q4E4   A0A0V0GAJ8   A0A2M4AZK9   A0A2M4BYX7   A0A084VNB1   W5J4Q9   A0A182SKJ7   A0A182NU86   T1HNI6   A0A182W786   A0A1S4GXV0   A0A182U7Y5   A0A182WU82   A0A182L1N2   Q7Q3V5   A0A182J6A5   A0A182P4X3   A0A182JNZ8   A0A2T7P9U3   A0A182UYM7   A0A182HUU8   A0A1S3D665  

Pubmed

19121390    22118469    26354079    23622113    26227816    21719571    + More
21282665    25315136    20075255    20798317    26108605    18362917    19820115    26369729    28648823    25348373    24495485    24845553    23537049    22516182    21292972    24945155    25401762    26823975    26483478    17204158    17510324    27129103    28004739    23254933    24438588    20920257    23761445    12364791    20966253   

EMBL

BABH01016794    NWSH01000595    PCG75454.1    ODYU01003431    SOQ42189.1    RSAL01000221    + More
RVE44061.1    AGBW02014588    OWR41377.1    KQ459875    KPJ19607.1    KQ459078    KPJ03823.1    GAIX01006263    JAA86297.1    GDQN01009913    JAT81141.1    JTDY01002697    KOB70898.1    LBMM01000644    KMQ97905.1    GBYB01003591    JAG73358.1    KQ414785    KOC60994.1    KQ976509    KYM82681.1    KZ288271    PBC29799.1    GL888609    EGI59049.1    KQ980895    KYN11750.1    GEDC01008613    JAS28685.1    GL766597    EFZ15014.1    KQ981606    KYN39580.1    KQ434803    KZC05974.1    KQ977151    KYN05287.1    KQ983238    KYQ46252.1    GL449414    EFN82797.1    JRES01000720    KNC28963.1    GECZ01018349    JAS51420.1    GEBQ01008391    JAT31586.1    KQ971344    EFA05246.1    GEDC01031512    JAS05786.1    GECU01003261    JAT04446.1    KQ435710    KOX79938.1    GDAI01002165    JAI15438.1    AJWK01033131    NEVH01020342    PNF21523.1    NNAY01000251    OXU29696.1    GAKP01007500    JAC51452.1    UFQS01000555    UFQT01000555    SSX04884.1    SSX25247.1    GAMC01015191    JAB91364.1    GL435922    EFN72479.1    GDHF01019275    JAI33039.1    GFDF01002871    JAV11213.1    UFQS01001272    UFQT01001272    SSX10068.1    SSX29790.1    GFDL01013818    JAV21227.1    DS231855    EDS38203.1    KK852496    KDR22735.1    GALX01001570    JAB66896.1    JXJN01009846    CVRI01000056    CRL01700.1    GANO01001237    JAB58634.1    KB632003    ERL87887.1    BT128114    AEE63075.1    CCAG010022201    APGK01044250    KB741021    ENN75110.1    GL732557    EFX78464.1    GAPW01004314    JAC09284.1    GBHO01009859    GBRD01006346    GDHC01005757    JAG33745.1    JAG59475.1    JAQ12872.1    JXUM01029726    KQ560863    KXJ80583.1    DQ440493    ABF18526.1    CH477222    EAT47274.1    GFTR01003098    JAW13328.1    GDKW01002959    JAI53636.1    GEZM01084772    JAV60687.1    AXCM01004946    GDIQ01257878    LRGB01001581    JAJ93846.1    KZS11055.1    KB203049    ESO86560.1    GDIP01246512    JAI76889.1    GGFJ01009457    MBW58598.1    AXCN02000771    GECL01001693    JAP04431.1    GGFK01012889    MBW46210.1    GGFJ01009073    MBW58214.1    ATLV01014735    KE524984    KFB39455.1    ADMH02002201    ETN57850.1    ACPB03007657    AAAB01008964    EAA12694.3    PZQS01000005    PVD30188.1    APCN01002478   

Proteomes

UP000005204    UP000218220    UP000283053    UP000007151    UP000053240    UP000053268    + More
UP000037510    UP000036403    UP000053825    UP000078540    UP000242457    UP000005203    UP000007755    UP000078492    UP000078541    UP000095301    UP000002358    UP000076502    UP000078542    UP000075809    UP000095300    UP000008237    UP000192223    UP000037069    UP000007266    UP000053105    UP000092461    UP000235965    UP000215335    UP000000311    UP000091820    UP000002320    UP000027135    UP000092443    UP000092460    UP000183832    UP000030742    UP000092444    UP000019118    UP000000305    UP000092445    UP000078200    UP000069940    UP000249989    UP000008820    UP000075883    UP000076858    UP000030746    UP000075886    UP000030765    UP000000673    UP000075901    UP000075884    UP000015103    UP000075920    UP000075902    UP000076407    UP000075882    UP000007062    UP000075880    UP000075885    UP000075881    UP000245119    UP000075903    UP000075840    UP000079169   

PRIDE

H9JMS4   

Pfam

PF14382   ECR1_N        + More
PF10447   EXOSC1
PF00078   RVT_1

Interpro

IPR012340   NA-bd_OB-fold        + More
IPR019495   EXOSC1_C       
IPR025721   Exosome_cplx_N_dom       
IPR039771   Csl4       
IPR000477   RT_dom       

SUPFAM

SSF50249   SSF50249       

ProteinModelPortal

H9JMS4   A0A2A4JV00   A0A2H1VMY6   A0A3S2P7Z3   A0A212EIQ7   A0A194RQ40   + More
A0A0N1PH92   S4PWS8   A0A1E1W2L0   A0A0L7L5U1   A0A0J7NZS8   A0A0C9R9V2   A0A0L7QR08   A0A195BDN5   A0A2A3EF17   A0A088AMT3   F4X368   A0A151IVM0   A0A1B6DSQ0   E9IWP2   A0A195FFV5   A0A1I8N845   K7INT2   A0A154P3Q6   A0A151IKZ5   A0A151WEM5   A0A1I8QEJ0   E2BNL8   A0A1W4XTC0   A0A0L0C958   A0A1B6FMM8   A0A1B6M6N5   D2A4N8   A0A1B6BWZ1   A0A1B6JZ23   A0A0N0BK12   A0A0K8TMN9   A0A1B0CX20   A0A2J7PYV6   A0A232FG08   A0A034WAV3   A0A336KJ09   W8BNP8   E2A274   A0A0K8V296   A0A1L8DXN5   A0A336L1L9   A0A1A9WDC8   A0A1Q3F0Z3   A0A1A9W6H9   B0W7Q9   A0A067RQ47   V5IA96   A0A1A9Y018   A0A1B0B863   A0A1J1IQ87   U5EWW3   U4U4C1   J3JXZ2   A0A1B0GAP7   N6U0S2   E9GPY0   A0A1A9Z1Y9   A0A1A9VDA0   A0A023ELX8   A0A0A9YW12   A0A182H936   A0A1S4EZA3   Q1HQF1   Q17KN0   A0A224XU43   A0A0P4VVI7   A0A1Y1KP95   A0A182LY86   A0A0P5FAI3   V3ZVE0   A0A0P4X8X8   A0A2M4C0T3   A0A182Q4E4   A0A0V0GAJ8   A0A2M4AZK9   A0A2M4BYX7   A0A084VNB1   W5J4Q9   A0A182SKJ7   A0A182NU86   T1HNI6   A0A182W786   A0A1S4GXV0   A0A182U7Y5   A0A182WU82   A0A182L1N2   Q7Q3V5   A0A182J6A5   A0A182P4X3   A0A182JNZ8   A0A2T7P9U3   A0A182UYM7   A0A182HUU8   A0A1S3D665  

PDB

2NN6     E-value=4.16777e-41,     Score=419

KEGG

101739617    K07573 exosome complex component CSL4 | (RefSeq) exosome complex component CSL4

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0006396   GO:0000178   GO:0003723   GO:0005737   GO:0000176   GO:0006886   GO:0016192   GO:0030126   GO:0030117   GO:0006418   GO:0003707   GO:0006281   GO:0006259  

PANTHER

PTHR12686  

Length:

221

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.16162

Exp number, first 60 AAs:

0.00397

Total prob of N-in:

0.09500

outside

1  -  221

 

 

Pi

292.911283

Theta

221.683798

Tajima's D

0.793068

CLR

0

CSRT

0.6035198240088

Interpretation

Uncertain