Gene

KWMTBOMO15572  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010819

Annotation

mitochondrial_ribosomal_protein_S25_[Bombyx_mori]

Location

Bomo_Chr26(+):2987265-2988622      View in EpiBrowser

Full name

Probable 28S ribosomal protein S25, mitochondrial      

Location in the cell

Cytoplasmic   Reliability : 1.231 Extracellular   Reliability : 1.666 Mitochondrial   Reliability : 1.197

CDS

ATGCCGTTCATGAAAGGAAGAGCGCCTATAAGACGCACATTGAACTACTTAAATGCCGGGAAGCTAGTCCTGAAAGACAAAATTAAGGTGTTTTCAGTAGCCTACAACATAACAGGCCAAAATAATGTAGGAACAAAAGAGTTCTGCTTTTGGTATCTACCGCAAATACAATACAAAAATCCAGACGTACAAATAGTAACTTTAAAAAATTTAACGCCTTCCCCTTTCATAAAATGCTATCTTGACGATGGAAGAAAAATTTTAATTGACGTAGACAATAAATCGAAAGAAGATATCTTAGAACATTTACTACATACTGTAGGGAAATCAAAAGAAACATTAGATTTGGAATTGTTAAAGGCTGAGAAAAAGGATAACCCTGCAAATTTTGGTGTTGGATGTGATAGATCGTGCATGTGTGAAGTTTTCGGGCAGGTGCCCTGCTCTGGTGTTGTGCCATTACCGAAATTCATGAGAGGAAAATATAAGAATCAAACTGATTAA

Protein

MPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKNPDVQIVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSKETLDLELLKAEKKDNPANFGVGCDRSCMCEVFGQVPCSGVVPLPKFMRGKYKNQTD

Subunit

Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

Similarity

Belongs to the mitochondrion-specific ribosomal protein mS25 family.

Keywords

Complete proteome   Mitochondrion   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  Probable 28S ribosomal protein S25, mitochondrial

Uniprot

Q1HQ84   A0A2H1WBS1   A0A2A4JYW4   A0A212ELB1   A0A3S2N9A9   A0A2W1BKL7   + More
A0A0N1PKB7   A0A0N0P9V4   A0A1E1WEZ7   A0A0L7KVB1   A0A0K8TSD7   U5ESV3   A0A2P8Z9Q7   A0A1W4VW12   A0A2M3ZCA8   A0A2M3ZJM7   A0A2M4C1Y2   W5JQX8   A0A182FC06   A0A1Y1KYD3   A0A3B0KXB2   A0A2S2R0M8   B4JL43   A0A0L0C4V6   A0A2M4AWX3   A0A182P1J1   A0A182TD31   A0A182KT49   A0A182X030   Q7PZX7   A0A182HPP7   B4Q2U0   A0A182R1X8   A0A182UYK1   A0A182M901   A0A182WD71   Q29H87   B4GY53   B4R4U7   B4IGE3   A0A182MXE6   A0A1Q3FCY8   A0A1W4WY88   A0A182QHH9   A0A2M4AX25   B0X6E5   B4L7I8   B3MVT9   A0A154PNX5   D6WMJ0   A0A182INE3   B4MJ42   Q17PN8   A0A336K8H4   A0A2H8TJN2   J9K5M6   A0A1J1IN09   A0A1B0ASY7   V5GEY6   Q9VY28   A0A034WDZ7   W8BH20   A0A1A9X020   A0A0M8ZXT0   A0A2S2NDE9   A0A0K8WFX4   B3NUZ8   A0A1A9XYC0   A0A1A9ZLN5   A0A158NCD9   A0A087ZV44   A0A182YC61   A0A1L8E0Y8   A0A151WRS4   A0A2R7WP75   A0A023EGL0   A0A151IGA0   A0A182K228   A0A195DV74   A0A195BW84   F4WWX7   A0A1I8MT69   A0A195F9E5   A0A2J7QFT5   A0A0M4EWG3   A0A1A9UV01   A0A0A9XZK7   R4WQH2   E2A1R4   A0A1B6HU32   B4M2V2   J3JZ31   A0A2A3E8U0   K7IQR1   A0A1B0C9N8   A0A232EWI4   A0A026VX31   A0A1B0G254   A0A1B6H125   C4WYD9  

Pubmed

19121390    22118469    28756777    26354079    26227816    26369729    + More
29403074    20920257    23761445    28004739    17994087    26108605    20966253    12364791    14747013    17210077    17550304    15632085    18362917    19820115    17510324    10731132    12537572    25348373    24495485    21347285    25244985    24945155    26483478    21719571    25315136    25401762    26823975    23691247    20798317    22516182    20075255    28648823    24508170    30249741   

EMBL

BABH01016771    BABH01016772    DQ443168    ABF51257.1    ODYU01007610    ODYU01008660    + More
SOQ50535.1    SOQ52437.1    NWSH01000363    PCG76966.1    AGBW02014089    OWR42274.1    RSAL01000179    RVE44947.1    KZ150025    PZC74821.1    LADJ01026996    KPJ21149.1    KQ459078    KPJ03805.1    GDQN01005633    JAT85421.1    JTDY01005358    KOB67080.1    GDAI01000552    JAI17051.1    GANO01002199    JAB57672.1    PYGN01000135    PSN53225.1    GGFM01005391    MBW26142.1    GGFM01007897    MBW28648.1    GGFJ01010020    MBW59161.1    ADMH02000597    ETN65708.1    GEZM01070298    JAV66402.1    OUUW01000015    SPP88708.1    GGMS01014378    MBY83581.1    CH916370    EDW00296.1    JRES01000902    KNC27393.1    GGFK01011940    MBW45261.1    AAAB01008986    EAA00469.3    APCN01003267    CM000162    EDX01684.1    AXCM01002803    CH379064    EAL31871.1    CH479196    EDW27680.1    CM000366    EDX17904.1    CH480835    EDW48877.1    GFDL01009599    JAV25446.1    AXCN02001698    GGFK01011941    MBW45262.1    DS232412    EDS41428.1    CH933813    EDW10982.1    CH902625    EDV35084.1    KQ435007    KZC13586.1    KQ971343    EFA03291.1    CH963738    EDW72131.1    CH477190    EAT48713.1    UFQS01000187    UFQT01000187    SSX00959.1    SSX21339.1    GFXV01002552    MBW14357.1    ABLF02030525    CVRI01000055    CRL01623.1    JXJN01003038    GALX01005927    JAB62539.1    AE014298    BT024442    BT029396    GAKP01006949    GAKP01006947    GAKP01006944    JAC52008.1    GAMC01005987    GAMC01005985    JAC00571.1    KQ435830    KOX71749.1    GGMR01002197    MBY14816.1    GDHF01002322    JAI49992.1    CH954180    EDV47096.1    ADTU01011819    GFDF01001778    JAV12306.1    KQ982796    KYQ50612.1    KK855098    PTY20820.1    JXUM01020614    GAPW01005135    KQ560576    JAC08463.1    KXJ81842.1    KQ977728    KYN00265.1    KQ980304    KYN16805.1    KQ976396    KYM92894.1    GL888417    EGI61220.1    KQ981727    KYN37063.1    NEVH01014856    PNF27403.1    CP012528    ALC49797.1    GBHO01020904    GBHO01020903    GBRD01014648    GDHC01022022    GDHC01000970    JAG22700.1    JAG22701.1    JAG51178.1    JAP96606.1    JAQ17659.1    AK417936    BAN21151.1    GL435766    EFN72737.1    GECU01029524    JAS78182.1    CH940651    EDW65127.1    BT128512    AEE63469.1    KZ288348    PBC27481.1    AJWK01002519    NNAY01001854    OXU22714.1    KK107648    QOIP01000008    EZA48317.1    RLU19555.1    CCAG010016298    GECZ01001383    JAS68386.1    AK343141    BAH72909.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000283053    UP000053240    UP000053268    + More
UP000037510    UP000245037    UP000192221    UP000000673    UP000069272    UP000268350    UP000001070    UP000037069    UP000075885    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000002282    UP000075900    UP000075903    UP000075883    UP000075920    UP000001819    UP000008744    UP000000304    UP000001292    UP000075884    UP000192223    UP000075886    UP000002320    UP000009192    UP000007801    UP000076502    UP000007266    UP000075880    UP000007798    UP000008820    UP000007819    UP000183832    UP000092460    UP000000803    UP000091820    UP000053105    UP000008711    UP000092443    UP000092445    UP000005205    UP000005203    UP000076408    UP000075809    UP000069940    UP000249989    UP000078542    UP000075881    UP000078492    UP000078540    UP000007755    UP000095301    UP000078541    UP000235965    UP000092553    UP000078200    UP000000311    UP000008792    UP000242457    UP000002358    UP000092461    UP000215335    UP000053097    UP000279307    UP000092444   

PRIDE

Q1HQ84    Q9VY28   

Pfam

PF05047   L51_S25_CI-B8        + More
PF01138   RNase_PH

Interpro

IPR040049   MRPS25        + More
IPR007741   Ribosome/NADH_DH       
IPR036249   Thioredoxin-like_sf       
IPR001247   ExoRNase_PH_dom1       
IPR027408   PNPase/RNase_PH_dom_sf       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR036345   ExoRNase_PH_dom2_sf       

SUPFAM

SSF52833   SSF52833        + More
SSF55666   SSF55666       
SSF54211   SSF54211       

Gene 3D

3.30.230.70    

ProteinModelPortal

Q1HQ84   A0A2H1WBS1   A0A2A4JYW4   A0A212ELB1   A0A3S2N9A9   A0A2W1BKL7   + More
A0A0N1PKB7   A0A0N0P9V4   A0A1E1WEZ7   A0A0L7KVB1   A0A0K8TSD7   U5ESV3   A0A2P8Z9Q7   A0A1W4VW12   A0A2M3ZCA8   A0A2M3ZJM7   A0A2M4C1Y2   W5JQX8   A0A182FC06   A0A1Y1KYD3   A0A3B0KXB2   A0A2S2R0M8   B4JL43   A0A0L0C4V6   A0A2M4AWX3   A0A182P1J1   A0A182TD31   A0A182KT49   A0A182X030   Q7PZX7   A0A182HPP7   B4Q2U0   A0A182R1X8   A0A182UYK1   A0A182M901   A0A182WD71   Q29H87   B4GY53   B4R4U7   B4IGE3   A0A182MXE6   A0A1Q3FCY8   A0A1W4WY88   A0A182QHH9   A0A2M4AX25   B0X6E5   B4L7I8   B3MVT9   A0A154PNX5   D6WMJ0   A0A182INE3   B4MJ42   Q17PN8   A0A336K8H4   A0A2H8TJN2   J9K5M6   A0A1J1IN09   A0A1B0ASY7   V5GEY6   Q9VY28   A0A034WDZ7   W8BH20   A0A1A9X020   A0A0M8ZXT0   A0A2S2NDE9   A0A0K8WFX4   B3NUZ8   A0A1A9XYC0   A0A1A9ZLN5   A0A158NCD9   A0A087ZV44   A0A182YC61   A0A1L8E0Y8   A0A151WRS4   A0A2R7WP75   A0A023EGL0   A0A151IGA0   A0A182K228   A0A195DV74   A0A195BW84   F4WWX7   A0A1I8MT69   A0A195F9E5   A0A2J7QFT5   A0A0M4EWG3   A0A1A9UV01   A0A0A9XZK7   R4WQH2   E2A1R4   A0A1B6HU32   B4M2V2   J3JZ31   A0A2A3E8U0   K7IQR1   A0A1B0C9N8   A0A232EWI4   A0A026VX31   A0A1B0G254   A0A1B6H125   C4WYD9  

PDB

6NU3     E-value=2.75369e-43,     Score=436

KEGG

732897    K17404 small subunit ribosomal protein S25 | (RefSeq) mRpS25; mitochondrial ribosomal protein S25

GO

GO:0005739   GO:0003735   GO:0005840   GO:0006412   GO:0005763   GO:0032543  

PANTHER

PTHR13274  

Subcellular location

Mitochondrion  

Length:

167

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00279

Exp number, first 60 AAs:

0.00142

Total prob of N-in:

0.08610

outside

1  -  167

 

 

Pi

157.292152

Theta

162.665276

Tajima's D

-0.204549

CLR

1.778278

CSRT

0.315734213289336

Interpretation

Uncertain