Silkworm Genome Informatics Database

Gene

KWMTBOMO15556

Pre Gene Modal

BGIBMGA010810

Annotation

PREDICTED:_homeobox_protein_HMX3-B-like_[Papilio_machaon]

Location

Bomo_Chr26(+):2408657-2416847 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.105

CDS

ATGTTTTCAAAATTGGGTTTGATCTCGCAGTGGAGCGCCCTGGCTGGACGATACGGAGGCCTGGTGCCGGCTCCCTGGTACTGGCAACGACCTCAAGAACGAGCCTCTCCTCCCAAAGAGGATTGCGTTGCTAATGAAGAAGGCTCAGCTGGTGGATCTCCGCGTCCCCGGAGTCCGCCACGAGCTCCCACTCCTCCGTCGCCGTCGCGTTCGTCCCCTCGTTCACCGCGACTACACCCCGCCTTATACCCGCAGCAGCAAGACCCTCAGGACTCCGATCCCGACATAGACGAGAGCGACGATTTCGATAAAGACGAAAAACGAGACCCCAATACGAATTTAGGAAAGAGGAAGAAGAAAACGCGCACGGTCTTCTCACGTTCTCAAGTGTTCCAGCTTGAATCCACGTTCGACATGAAACGGTATTTGAGCAGCTCCGAACGCGCCGGCTTAGCGGCTAGCTTACATCTCACCGAGACTCAGGTAAAGATCTGGTTCCAGAACCGACGTAACAAGTGGAAGAGGCAGTTAGCTGCTGAGCTAGAAGCGGCAAACATGGCCCACGCCGCCCAACGTCTCGTTCGGGTACCGATTCTGTATCACGAGTCGCGACCAACGTCGATCCCGCACACGCCGCTGCCGATGCACCCTCAGTTCTCCAACGAGCCCGGAGTTTATTTTCCTCAGCAGGCGCCGCAGCAGCTGCAGCCCCTCCCGGCTTCTCCGGTGACGTCACGGGCTCCCCTCTCGAGTCTGGTATAG

Protein

MFSKLGLISQWSALAGRYGGLVPAPWYWQRPQERASPPKEDCVANEEGSAGGSPRPRSPPRAPTPPSPSRSSPRSPRLHPALYPQQQDPQDSDPDIDESDDFDKDEKRDPNTNLGKRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANMAHAAQRLVRVPILYHESRPTSIPHTPLPMHPQFSNEPGVYFPQQAPQQLQPLPASPVTSRAPLSSLV

Uniprot

A0A194PL22 A0A2A4JXN4 A0A2W1BQ02 A0A212F1I9 A0A2H1VB48 M4IYX8 + More
H9JMQ7 A0A0N0PBX2

Pubmed

26354079 28756777 22118469 19121390

EMBL

KQ459601 KPI93698.1 NWSH01000419 PCG76526.1 KZ149936 PZC77132.1 + More
AGBW02010875 OWR47591.1 ODYU01001368 SOQ37444.1 JQ828929 AGB13777.1 BABH01016724 KQ460777 KPJ12431.1

Proteomes

UP000053268 UP000218220 UP000007151 UP000005204 UP000053240

PRIDE

M4IYX8 H9JMQ7

Pfam

PF00046 Homeodomain

Interpro

IPR009057   Homeobox-like_sf        + More
IPR020479   Homeobox_metazoa
IPR017970   Homeobox_CS
IPR001356   Homeobox_dom

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

A0A194PL22 A0A2A4JXN4 A0A2W1BQ02 A0A212F1I9 A0A2H1VB48 M4IYX8 + More
H9JMQ7 A0A0N0PBX2

PDB

5FLV E-value=2.41682e-13, Score=181

KEGG

101737794 K09349 homeobox protein Nkx-5 | (RefSeq) Caudal; homeobox protein HMX3-B

GO

GO:0005634 GO:0006355 GO:0043565 GO:0003677 GO:0032549 GO:0022857 GO:0007165 GO:0006418 GO:0003707 GO:0006281 GO:0006259

Subcellular location

Nucleus

Length:

253

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0807200000000001

Exp number, first 60 AAs:

0.0783

Total prob of N-in:

0.01375

outside

1 - 253

Pi

220.872353

Theta

151.086483

Tajima's D

1.47242

CLR

0.666033

CSRT

0.779411029448528

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics