Silkworm Genome Informatics Database

Gene

KWMTBOMO15555

Pre Gene Modal

BGIBMGA014213

Annotation

hypothetical_protein_TcasGA2_TC002200_[Tribolium_castaneum]

Location

Bomo_Chr26(+):2386740-2387838 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.527

CDS

ATGGGTATTAAAGTATTGTCTCCCATAACATTCATGAAAGTGGGCATCCCGGACCCTGGTTTTTCACACATTATGAGCTTTAGGAGACAAGTATACGTTTCCCCTGAGGATGAAAAAAGATTACCAGAATCGATGCAAATTAACTATGATGAAACCAATTATTGGATTTATATTACAAACGAAACAATGAAATGCTTTGTATGTAATGGAATGGGACACTTGGCAAAATACTGTCCGCAAAGCAGTCAACAGGTTCTTGGTACCAAAGGCCCTAACAACCTCACGCAAGAAAAACCAACTACTTCCAATGACACTACAGTCGAAACCAACAAGCTACCGTCACAGTCTCTCAATTCTACAATTAATCTTGAATCTGAAATAAACCAAATCTACCCTCCTACCGAAATTTCCAAACCGCAAGTACCAACAAACTTACTACCACACAATAAATTTGACATATACAAAGGTGTTAAGCGGATTCATCCATCTACCTCTTCAGAACCATCACAACCGGAAATAAATCAAGCTGAACCTACTTTAGATGACAGTAATATTATAGTCAGTGATTACACGGATGAAACCGACAGTAATTGGTCTCTGGACGAAGAACTAAAGAAGACCCCTAAGTCACTCAAGAAGAAGAAGAAAACTCTCGATGACAGAACTGAAGAACAAGTTTGGAAGGATATTAAAACAGAGTTGGATCAGTCAGAAATACAACCTCACTTTCCACTCACCTTAGACCAGTTTATTAGTTTTCTAGATAATTCCCGTAGCAAACAAAATCTTCAAGAACTTATCAAAGACTATACAGATGATATCCCGGATCTAATTGATATGTGCACATTTCTCCGCACTAAAATGAATTTAAATAGGAACCTCAAAAATAGATGTACAAGATTAGTTAAGAAACTAGAACTTATCAAACTGTTAGAAACCAGTAACAAGCCATAG

Protein

MGIKVLSPITFMKVGIPDPGFSHIMSFRRQVYVSPEDEKRLPESMQINYDETNYWIYITNETMKCFVCNGMGHLAKYCPQSSQQVLGTKGPNNLTQEKPTTSNDTTVETNKLPSQSLNSTINLESEINQIYPPTEISKPQVPTNLLPHNKFDIYKGVKRIHPSTSSEPSQPEINQAEPTLDDSNIIVSDYTDETDSNWSLDEELKKTPKSLKKKKKTLDDRTEEQVWKDIKTELDQSEIQPHFPLTLDQFISFLDNSRSKQNLQELIKDYTDDIPDLIDMCTFLRTKMNLNRNLKNRCTRLVKKLELIKLLETSNKP

Uniprot

H9JXE7 H9JT23 A0A0J7KTV0 J9JYJ6 Q76IM0

Pubmed

19121390 12949131

EMBL

BABH01042307 BABH01030666 LBMM01003314 KMQ93669.1 ABLF02023436 ABLF02023438 + More
ABLF02023446 AB097139 BAC82610.1

Proteomes

UP000005204 UP000036403 UP000007819

PRIDE

H9JXE7 H9JT23

Pfam

PF00098   zf-CCHC        + More
PF00075   RNase_H
PF00078   RVT_1
PF14529   Exo_endo_phos_2

Interpro

IPR036875   Znf_CCHC_sf        + More
IPR001878   Znf_CCHC
IPR005135   Endo/exonuclease/phosphatase
IPR012337   RNaseH-like_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR036397   RNaseH_sf
IPR002156   RNaseH_domain
IPR000477   RT_dom

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098
SSF56219   SSF56219

Gene 3D

3.30.420.10 3.60.10.10

ProteinModelPortal

H9JXE7 H9JT23 A0A0J7KTV0 J9JYJ6 Q76IM0

KEGG

102466386 no KO assigned | (RefSeq) Mir2835, bmo-mir-2835; microRNA 2835

GO

GO:0008270 GO:0003676 GO:0004523 GO:0006351 GO:0032549 GO:0022857 GO:0007165 GO:0006418 GO:0003707 GO:0006281 GO:0006259

Length:

317

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01946

Exp number, first 60 AAs:

0.01832

Total prob of N-in:

0.00978

outside

1 - 317

Pi

0

Theta

0

Tajima's D

0

CLR

0.252369

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree