Silkworm Genome Informatics Database

Gene

KWMTBOMO15554

Pre Gene Modal

BGIBMGA010808

Annotation

PREDICTED:_titin_[Papilio_machaon]

Location

Bomo_Chr26(+):2341860-2358044 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.192

CDS

ATGGAGTCCCACATACTGAACACATATCACCAGGCACGGTACCGGACGATCGGTCACAAGGTGATGAGAGCGAAGAGCGATTCCCTTTCTTCATCGGAGGGCAGCTACAATCACAACAGCCCGGACTATTCTCGTATCGCGGCCCAGCATGGCGGTTACGTGGATAGGACGCGCTCCGACGACAGCAACGTTAACGACTGGTGCCAGAATCAGGTGATAAACACAACACAAACAAGCCACGACACAACATCTGATGAAGAAAGCTCTCACGATGAAGACCTTGATGATGAAGACAACATTGTCGTGCAGGAAATCAACGTGGAAGACGTTGACGTGGACGACGACGACGATGATGAGGAGGCGATAGCTCCAGGGTTAAGAAATGTGCATGCTGCAATTGTAGGAAGCGATGATACGCTTGTTGAAGGACATGATTACGATGTCATCACGGTATACACTGTCAACCCAGATTTAGATTTACTCGAAGCATCATCAGACGAAGAGAAAGATTCTGATAATGCAAATGAAAATGAAACTGAGGCTGTGGAGGAAGATAACAATTACAAAGTTAACTTTGTACAACCAGCTACTGATATAAGGAGGCGTGTCATGGACATGTTGTCGACGCCAATCGAATCAAATGTGGAAGAGTTTTTACTCAAGAACGGTAGCATACTAAATACAGACGAACCGGTCGTGAATGATGTCGATGAATATTTCATCAAAGAGAAACCACCGACGCCGATACCTGATGTTGATGAGTTTTTTGTTAAAACCAAACCGGCGGAGTCGATTCCTGAAATAACACCTAACATTGACGAATTTCTTGTCAAAGAACCAATTAAGAAAGAGCCTCTTCCTAATGTGGACGAGTTTTTCGTCAAAACAGAGACAGTGGGAACGCCCGAAGCGACTGCATCAGTTTCGAAGCCTGAGAACAATGGAGACGTTTCCATCAATGATTTGGAGGTGCTACCTAACATTGAGGAATTGAAGAGATATCTCCTAGAGGATATGTCTTATGCTAAATTCAGGAGTATACAGAAATCTTGCTCAGTTCCACAGTCACCCATGCAGAGTATATTAGACATAGACGATACTAAAACATGCCTAAGTTTTGAAGATCTAAACTTAGACCTGTCGGATCTCACATTCGACAATGATAAAGACAAGTCTGATCTTACCGACAAAAGCGATGATATGCCACGCACGCTGACCGATGATGACATAAACAGCTTCCTGATCACAAGCAAAACGGAACACAAAGAATCCGAGAGGTACGAAGATGATCTTAGTCATCAGGATATGGAAATCGAGAAACCGCTCGATCCAAAAATTGAACCTGCGATTCCAAAAGTTAAAATTGTAACAACAAAAATTGAACCTCCAGTTATTTTGAAGAGGAAGCCGGTGGCACCAGTACCAGTCGTCACACCAACTGTTCTAGACTTTTGTATAGAAAAAACAAAGATAAAAAAGGAGGTGGAATCAAAAATCGAAGTTGACGATTTCGTTGACGTCGAATCGTGTAATGATTCTTCTATACCAGTTTTGGAAGCCAACAACTTGAATTCCTTGTTAGAACAATTCGAGGCTACAGAGAAACTAAACACAAAGAAGAGGACAGTTGTTAAGGCTGAGGAGAAGCCTAAATCATCGAAATACAGCCTGACCAACGGTATGCGACTTCAGGATGCCGGTGTCCAGCTGAACAAGAACAAAATGCGGCAAATACTGATGCCGTCGACCATAAACAAGGTGATAAGGTCTCCTAGTCCGGTTCACTCTGACCACGATTACTGCTCTTCGAAAAAGCGACACAGTCTCCCTAGTGTGAGGGGCGGACAGAGTCTTCTCAAACCCGAGGTGCTGTCCAGCAACAGTCGAATACTCAACTCGAGGCACAGGTCGTGCAAAAACAAAAAAGTAGTTTACCATTTGAGCAGTGACGAGGAAACAGAAAAAAGTGATAATAAACAAAAAAAAGTGACTAATCAAAGTGACGACGTGAACTTGCGCAAAAAAGTCATAAAGCAACCTATAAAGTCGCCCGTTCAATCTAATTGTCGTAAAAAACTTTCGCCTCCACACGTTGTGCCCGAAGAAAGTGTCAAAGATAAACATAAAAATACTGTGATTTCTAAAAAAGCTTCAAAAGCTAGTGATACTCCGAGTAGTCAAAAAACGAACGGTAGCATTAAGTTAACAATTAAAAATAAATCTGAAGTAATATTGAACTGTGATTTTAAAGACTCTCAGAAAGATAAAAACTTAGAAAAGTGTAAGTCTAGTGTTAGTGATAAAAAATGTAACGATGTTAGTAAAACTGTAAATATTAAGCAAGAAAAAATTAAAGAAGTAGATAGGCACGAAAACAAAAAAAATAGTAACACAGAGACTGTGACTGTTAAGGAAGAATCCCGTCCAAGAGAGGAACATTTTTATACAGCACTTTTTAGTAATAAGCAAGATGTCCAAGTACCTCAAGTGATTCAAGTCAAAGCAGAGAAAAGGCCGTTTGACGAAGAGATGACCAAAATCGCGGAAGAGGCTGTCAAGAAGGAATTGGAACAACCACTGAAGAAGAAAAAGCTAAATCTGCAAGAGTATAAATTGCGGAGGGGTGTGAGTTCGAACAATAGTTCTACGACGGTCAGTCCCGAGGCCATATTCCCGGACATGCCGAGTCCATCTTGCTTAGATAAGCTAAAGTACGCTGTGCCCCGGACACCTCCGAACACCAACAACACAAACACGCACAAAACGCAAAACGAAGCGCCCAAGAAAATATTCGATCCTATTAAAGAAGCGTCTAGAAAGATACTCATGAATTCGAGAAAGCATAAAGCCGAGGCAATGCGTAAGCGAGATGAAGATATTGTCATGAGTAAAATTCCAAAAGTCGATATTCTTGAATTGAAACCTCTGATCAGTGAGGATGAGATGTTGCAAATATCTAAGATGACTGCCCCCGAAGCATTACCTGTGCCGGTAAAACCGCAACTATCACCTAATTACGAAGAGATCATTTTAGTCAGCGTCGGTGTTAATACTGATGAAAACGTATTCAAAGAAATGGACGCTGAAAAGAGGATAAAAACTGAAAAACGAAAATCCAGTTCACCACCAAAAGGCTCTAAATGTCTAATTAACTTTAAAATTAAGAAATCTGATCACGTTTTGAAGCAAAACGTTTTTGATAGTGTGAAGAAAGACAAACGGAATCTAAACGATGATTGCAAACACGAATCAAAAATCGACAAGGATAGATACAAAGACATTACCGCGACATTGAAAAGCGTCGAGAAACAAGTTGAAACTAAGATATCTAGTAATTCGTTATTTGCTAGTATACAAGACGTGGTCATGAAGAAGGCCCCAGGCGAAATAGTTGAAAAGCCACATGAAGTTAGACGCTGCAAATCTAAATCCCCACAGCACAAAGAACAAACAGTCGCCTCTGTCTCCATAATCCGTGACTATGACCCCAAAGCTGAGCACGGCGAAGATAAAGTTATCTTACACTTGGTCAAAGGTAGAAGGAAACCAAAGTCTTCCAGTAGCATAGTTCAAACCGATCCGATACCAGCCCAAAGTGAATCAATCGCAGATAACACGAACAGAAGGAGAAATGACAGTGACATGTCGGTGTCGAGTGATAACAGCACTAAGAGGAAAGAAAAGACTGATATTGTCAAATCTAGACCAGATAGGATAGAGAAGAAAGATTCTAGACGTTCTAGGTCCAAAGAGAGATACGACGCCAAACATAGACGGAGATCGAGGTCTAGGAGCAGGAGAAGGAGGCACAGATCTATAAGCAAGAGCAGATCTCGTTCAAGAGGGGGATACAAGCGCTTCAGACGTTCGGACTCACCTTATACTGCCAAAGGCAGATCAAGCTCCCGCAGACGGAGATCTCCCTCAGCTAAAAAAGAAAAACAATCAAAATCGGTGTCCAGACCGAGAAGTAGGTCGTTGACGCCAATTAAAAGGCCAAAATCGAGTCCTCAGATTAATAACAATGTTAATGAGAAAAAACTTAACTCGGCCACACCTCCACTTAGGAAATCTACTGTGTCCGAAAGCTCTGATTCTTCATCTAGTTCATCATCATCGTCTTCCAGCAGTTCGTCGAGTAGTTCCCGCAAGTCCGCAAACTCGCCGCGCTCGTCCAGCACTTACAAACCAGACGAGAACTACACGAAGAAAGCTTACAGGAGCTACAGCTCTGAGGATAGAGACAGCAATACGCCCGTCGAAGAGAGACGGATAGTGTTCGTCGGTAGGTTAGAGAAGGACATAACGAAGTCTACCCTGCGGAGTCAGTTCGTTAAATACGGACCGGTCATTGAAGTCAGGCTTCACAGCAAAGAGGATGGGTCTCGTTACGGGTTCGTGACGTACCAGAGGGCGAGGGACGCGTGGAGCGCGGTGGAGGCGGCCGCCGCCTTCCCTCAGTACGACGTTGGCTTCGGCGGCAGGAGGGCCTTCTGCAGACAGAGCTACGCCGACCTGGACGGACTCGAAGCTAAGTACACGGAGAGCGCGTTCCACGGTCAGGCCGCGATCCCGGCGCGGCGCACCGACGACATGTCCTTCGAGCAGATGCTCCTCGAGATGAAGAAGAAGCTGAGCCAGCGGAAGAGCGAGAAGAAGCGCGGCGACGCCACCAAGCCTTGA

Protein

MESHILNTYHQARYRTIGHKVMRAKSDSLSSSEGSYNHNSPDYSRIAAQHGGYVDRTRSDDSNVNDWCQNQVINTTQTSHDTTSDEESSHDEDLDDEDNIVVQEINVEDVDVDDDDDDEEAIAPGLRNVHAAIVGSDDTLVEGHDYDVITVYTVNPDLDLLEASSDEEKDSDNANENETEAVEEDNNYKVNFVQPATDIRRRVMDMLSTPIESNVEEFLLKNGSILNTDEPVVNDVDEYFIKEKPPTPIPDVDEFFVKTKPAESIPEITPNIDEFLVKEPIKKEPLPNVDEFFVKTETVGTPEATASVSKPENNGDVSINDLEVLPNIEELKRYLLEDMSYAKFRSIQKSCSVPQSPMQSILDIDDTKTCLSFEDLNLDLSDLTFDNDKDKSDLTDKSDDMPRTLTDDDINSFLITSKTEHKESERYEDDLSHQDMEIEKPLDPKIEPAIPKVKIVTTKIEPPVILKRKPVAPVPVVTPTVLDFCIEKTKIKKEVESKIEVDDFVDVESCNDSSIPVLEANNLNSLLEQFEATEKLNTKKRTVVKAEEKPKSSKYSLTNGMRLQDAGVQLNKNKMRQILMPSTINKVIRSPSPVHSDHDYCSSKKRHSLPSVRGGQSLLKPEVLSSNSRILNSRHRSCKNKKVVYHLSSDEETEKSDNKQKKVTNQSDDVNLRKKVIKQPIKSPVQSNCRKKLSPPHVVPEESVKDKHKNTVISKKASKASDTPSSQKTNGSIKLTIKNKSEVILNCDFKDSQKDKNLEKCKSSVSDKKCNDVSKTVNIKQEKIKEVDRHENKKNSNTETVTVKEESRPREEHFYTALFSNKQDVQVPQVIQVKAEKRPFDEEMTKIAEEAVKKELEQPLKKKKLNLQEYKLRRGVSSNNSSTTVSPEAIFPDMPSPSCLDKLKYAVPRTPPNTNNTNTHKTQNEAPKKIFDPIKEASRKILMNSRKHKAEAMRKRDEDIVMSKIPKVDILELKPLISEDEMLQISKMTAPEALPVPVKPQLSPNYEEIILVSVGVNTDENVFKEMDAEKRIKTEKRKSSSPPKGSKCLINFKIKKSDHVLKQNVFDSVKKDKRNLNDDCKHESKIDKDRYKDITATLKSVEKQVETKISSNSLFASIQDVVMKKAPGEIVEKPHEVRRCKSKSPQHKEQTVASVSIIRDYDPKAEHGEDKVILHLVKGRRKPKSSSSIVQTDPIPAQSESIADNTNRRRNDSDMSVSSDNSTKRKEKTDIVKSRPDRIEKKDSRRSRSKERYDAKHRRRSRSRSRRRRHRSISKSRSRSRGGYKRFRRSDSPYTAKGRSSSRRRRSPSAKKEKQSKSVSRPRSRSLTPIKRPKSSPQINNNVNEKKLNSATPPLRKSTVSESSDSSSSSSSSSSSSSSSSSRKSANSPRSSSTYKPDENYTKKAYRSYSSEDRDSNTPVEERRIVFVGRLEKDITKSTLRSQFVKYGPVIEVRLHSKEDGSRYGFVTYQRARDAWSAVEAAAAFPQYDVGFGGRRAFCRQSYADLDGLEAKYTESAFHGQAAIPARRTDDMSFEQMLLEMKKKLSQRKSEKKRGDATKP

Uniprot

A0A2A4JWZ1 A0A2W1BZA1 A0A3S2NHD4 A0A212F1G9 A0A0N1PHJ1 A0A194PK48 + More

Pubmed

28756777 22118469 26354079

EMBL

NWSH01000419 PCG76527.1 KZ149936 PZC77133.1 RSAL01000098 RVE47631.1 + More
AGBW02010875 OWR47590.1 KQ460777 KPJ12429.1 KQ459601 KPI93697.1

Proteomes

UP000218220 UP000283053 UP000007151 UP000053240 UP000053268

Pfam

PF00076 RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR034605   PGC-1
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

A0A2A4JWZ1 A0A2W1BZA1 A0A3S2NHD4 A0A212F1G9 A0A0N1PHJ1 A0A194PK48 + More

PDB

6QX9 E-value=0.0192491, Score=95

KEGG

101736112 K17963 peroxisome proliferator-activated receptor gamma coactivator-related protein 1 | (RefSeq) ser

GO

GO:0003712 GO:0003723 GO:0008134 GO:0000166 GO:0003676 GO:0006351 GO:0032549 GO:0022857 GO:0007165 GO:0006418 GO:0003707 GO:0006281 GO:0006259

PANTHER

PTHR15528

Length:

1560

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00099

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1560

Pi

289.206138

Theta

173.342199

Tajima's D

1.950901

CLR

0.250222

CSRT

0.87845607719614

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics