Gene

KWMTBOMO15547  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010739

Annotation

PREDICTED:_nucleolar_protein_56_[Amyelois_transitella]

Location

Bomo_Chr26(-):2276786-2283709      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.404 Nuclear   Reliability : 1.631

CDS

ATGAGTAAGTTCTATGTGTTATTCGAACACAGCGCGGGCTTTGCGTTGTTCCGCGTTGCTGAATTTGAAGAGTTAGCGGCTTTCCTGCCTCAGGTCGAAGAGTCCGTGACAGATTTGCAACGTTTTAATGCTGTTGTGACTTTAATAGCTTTCCAACCACACAAGTCGGCGATCGTTGCTTTGGAAAATATCAACGCGGTATCTGAAGGTATTCTTCCTGAGGATTTGAATCTATTCCTCGAAGGTGGTCTTCCAAAGAGGAAAAAACGATCAAAATGCACACTCGGTGTACTGGATCCCAAGCTAGGAGCAGCCATCAGCGAGGCCCTGGAAATTCAGTGCACGCATACAGGAGCAGTCCCGGAGATTTTGAGAGGCATACGTTATCACTTCCACTCGCTCATCAAAGGCCTTACCCTCAAAGCATGCAGTGTGGCACAGCTTGGTCTTGGCCACTCATACTCACGAGCTCGTGTCAAGTTCAATGTTCACCGAGTGGACAACATGATCATACAATCAATAGCCCTGCTCGATCAACTTGACAAAGATGTTAACACTTTCTCCATGAGAATAAGAGAATGGTATTCCTATCACTTCCCGGAGCTTGTGTCAATTGTTCCTGAAAATCACCTGTACACAAAATGCGCCGAGTTCATAAAAGATAGGAAGACCCTGTGCGAAGAGTCATTAGAACCGCTCACTGAGATCCTGGGAGACTCCGAGAAGGCGCAGGCTATCATAGATGCCTCGAAAATGTCCATGGGAATGGATATTTCACCAGTTGACTTGATTAACATCCAAATGTTTGCTGGCAGAGTAGTAGCACTCAGCAATTATAGAAAACAGATTTCAGAATACCTGCATAGTAAGATGAACTCCGTAGCACCTAATTTGTCTACGTTGGTTGGAGATCAAGTTGGAGCCAGGCTGATCTCCAAGGCTGGCTCCCTGACCAACCTTGCCAAGTATCCCGCATCTACATTGCAGATATTGGGTGCAGAAAAAGCTCTCTTCCGAGCTCTGAAGACACGTTCGAATACTCCAAAATATGGTCTGCTATACCACTCCACGTTCATTGGACGTGCCGGACTGAAGAACAAAGGTCGGATCAGCAGATATCTGGCCAATAAGTGCTCAATTGCATCCAGGATCGATTGTTTCTCTGAAATGCAATCAGCTGTATTTGGTGAAAAACTCCGTCAGCAAGTAGAAGACCGTCTGAAATTCTATGAGACCGGTGATATTCCCAAAAAGAATATTGAAGTGATGAAGGAAGCTATGGACGAAGTTCAGAAGGCTGTTGACGCCGAGGCCAGTGCCAAGAAGAAAAAGAAAAAGAAGAAGAAGAAGTCCGAATTAGACGAGAGTGTGGCCATGGACGAAGATTAG

Protein

MSKFYVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENINAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFIKDRKTLCEESLEPLTEILGDSEKAQAIIDASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMNSVAPNLSTLVGDQVGARLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGLLYHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDEVQKAVDAEASAKKKKKKKKKKSELDESVAMDED

Uniprot

A0A2W1BQ11   A0A2H1VQC5   A0A194PK44   S4PYI0   A0A212FAD8   D6X0P4   + More
A0A0C9PXB9   A0A336MNR6   A0A336MBQ1   K7J6L3   A0A232F1V3   A0A1B0DF51   V5G7Y4   A0A1B0C8Z0   A0A2A3EGZ7   A0A1L8DGA0   A0A2P8YU76   T1PAM4   A0A2J7QHW3   A0A1Y1KXF5   A0A1I8QAZ4   A0A0P6INT1   A0A1I8N5Y1   A0A1Q3EWX4   A0A034VY07   A0A067RI80   B4LXU2   U5EVT2   B3P7J1   A0A0P6FTT3   Q95WY3   B3M226   B4HE83   A0A023ETB5   B4R013   B4PLP7   B0W8P5   J9EAN1   A0A0K8V9S8   B4K5D0   A0A1W4VQ82   B4JTX8   Q8IGT5   A0A2M3Z060   W5J7D4   A0A1A9XMB1   A0A1B0BWG9   A0A0M4ES87   A0A1B0A7V7   A0A0P5RT47   A0A0P6GKX5   E0VA68   A0A0P5TNE1   A0A0P5PJ64   A0A2M3Z0B4   A0A0P6EAD4   B4NH63   A0A1W4WFQ9   A0A0P6GS35   A0A0P5AIL9   A0A0P4YAF5   A0A0P5ZQ27   A0A1A9V8R5   A0A0P6A751   E9H9X9   A0A0P5ZR14   A0A0N8B782   A0A1B0FHV5   A0A0N8DFN1   A0A0P5JIR2   A0A0P6HUQ9   A0A0P6FSR6   A0A2M4BL30   A0A1J1IL23   A0A182K2N3   A0A0P5LFX3   A0A0N8A4Q0   A0A154NXA6   A0A0P5H479   A0A0P5MVE1   A0A0N8DYH1   A0A2M4BLT0   A0A0P5ISR4   B4G4N7   A0A0P5KW57   A0A0P5MFA5   A0A0N8DXV9   W8CDF5   A0A0P5MST9   A0A0P5PMZ9   A0A0P6EB88   A0A2M4A4R2   A0A1A9WNM4   T1EAH0   A0A0P5TU23   A0A0P5M929   A0A0N8E4J5   A0A182FST5   A0A0A1WJU2   A0A0P6FMA3  

Pubmed

28756777    26354079    23622113    22118469    18362917    19820115    + More
20075255    28648823    29403074    28004739    25315136    25348373    24845553    17994087    11430491    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24945155    26483478    17550304    17510324    20920257    23761445    20566863    21292972    24495485    25830018   

EMBL

KZ149936    PZC77142.1    ODYU01003647    SOQ42662.1    KQ459601    KPI93692.1    + More
GAIX01003253    JAA89307.1    AGBW02009499    OWR50683.1    KQ971371    EFA10126.1    GBYB01006158    JAG75925.1    UFQT01001415    SSX30453.1    UFQT01000878    SSX27782.1    AAZX01013517    NNAY01001214    OXU24705.1    AJVK01058532    GALX01002236    JAB66230.1    AJWK01001607    AJWK01001608    AJWK01001609    KZ288253    PBC31007.1    GFDF01008596    JAV05488.1    PYGN01000356    PSN47790.1    KA645754    AFP60383.1    NEVH01013964    PNF28161.1    GEZM01073772    JAV64840.1    GDIQ01002323    JAN92414.1    GFDL01015228    JAV19817.1    GAKP01012524    GAKP01012522    GAKP01012519    JAC46433.1    KK852458    KDR23556.1    CH940650    EDW67901.1    GANO01003269    JAB56602.1    CH954182    EDV54152.1    GDIQ01043151    JAN51586.1    AE014297    AF223353    BT100237    AAF55992.2    AAL14871.1    ACY56905.1    CH902617    EDV43350.1    CH480815    EDW43180.1    JXUM01066871    JXUM01151997    GAPW01001055    KQ571347    KQ562420    JAC12543.1    KXJ68190.1    KXJ75950.1    CM000364    EDX13919.1    CM000160    EDW97996.1    DS231859    EDS39095.1    CH477634    EJY57846.1    GDHF01016673    JAI35641.1    CH933806    EDW16156.2    CH916374    EDV91557.1    BT001613    AAN71368.1    GGFM01001143    MBW21894.1    ADMH02002125    ETN58694.1    JXJN01021768    CP012526    ALC47572.1    GDIQ01248593    GDIQ01196416    GDIQ01185713    GDIQ01096495    GDIQ01081197    GDIQ01077450    GDIQ01037501    LRGB01001361    JAL55231.1    KZS12600.1    GDIQ01044013    JAN50724.1    DS235004    EEB10274.1    GDIP01141494    JAL62220.1    GDIQ01128177    JAL23549.1    GGFM01001170    MBW21921.1    GDIQ01218791    GDIQ01081198    GDIQ01077451    JAN17286.1    CH964272    EDW84560.2    GDIQ01029568    JAN65169.1    GDIP01198973    JAJ24429.1    GDIP01230371    JAI93030.1    GDIP01041158    JAM62557.1    GDIP01038398    JAM65317.1    GL732609    EFX71480.1    GDIP01040397    JAM63318.1    GDIQ01206003    JAK45722.1    CCAG010015572    GDIP01038399    JAM65316.1    GDIQ01223989    JAK27736.1    GDIQ01029567    JAN65170.1    GDIQ01046057    JAN48680.1    GGFJ01004591    MBW53732.1    CVRI01000055    CRL00941.1    GDIQ01174461    JAK77264.1    GDIP01182737    JAJ40665.1    KQ434777    KZC04233.1    GDIQ01232943    JAK18782.1    GDIQ01158914    JAK92811.1    GDIQ01079500    JAN15237.1    GGFJ01004760    MBW53901.1    GDIP01238130    GDIQ01234247    JAI85271.1    JAK17478.1    CH479179    EDW24553.1    GDIQ01179668    JAK72057.1    GDIQ01156911    JAK94814.1    GDIQ01081196    JAN13541.1    GAMC01002036    JAC04520.1    GDIQ01174462    JAK77263.1    GDIQ01126733    JAL24993.1    GDIQ01079501    JAN15236.1    GGFK01002307    MBW35628.1    GAMD01001043    JAB00548.1    GDIP01121980    JAL81734.1    GDIQ01158913    JAK92812.1    GDIQ01062508    JAN32229.1    GBXI01015517    GBXI01002132    JAC98774.1    JAD12160.1    GDIQ01046058    JAN48679.1   

Proteomes

UP000053268    UP000007151    UP000007266    UP000002358    UP000215335    UP000092462    + More
UP000092461    UP000242457    UP000245037    UP000235965    UP000095300    UP000095301    UP000027135    UP000008792    UP000008711    UP000000803    UP000007801    UP000001292    UP000069940    UP000249989    UP000000304    UP000002282    UP000002320    UP000008820    UP000009192    UP000192221    UP000001070    UP000000673    UP000092443    UP000092460    UP000092553    UP000092445    UP000076858    UP000009046    UP000007798    UP000192223    UP000078200    UP000000305    UP000092444    UP000183832    UP000075881    UP000076502    UP000008744    UP000091820    UP000069272   

PRIDE

Q95WY3    Q8IGT5   

Pfam

PF01798   Nop        + More
PF08156   NOP5NT
PF05793   TFIIF_alpha

Interpro

IPR012974   NOP5_N        + More
IPR042239   Nop_C       
IPR029012   Helix_hairpin_bin_sf       
IPR012976   NOSIC       
IPR002687   Nop_dom       
IPR036070   Nop_dom_sf       
IPR008851   TFIIF-alpha       
IPR036390   WH_DNA-bd_sf       
IPR036388   WH-like_DNA-bd_sf       

SUPFAM

SSF89124   SSF89124        + More
SSF46785   SSF46785       

Gene 3D

1.10.246.90     1.10.287.660     1.10.10.10    

ProteinModelPortal

A0A2W1BQ11   A0A2H1VQC5   A0A194PK44   S4PYI0   A0A212FAD8   D6X0P4   + More
A0A0C9PXB9   A0A336MNR6   A0A336MBQ1   K7J6L3   A0A232F1V3   A0A1B0DF51   V5G7Y4   A0A1B0C8Z0   A0A2A3EGZ7   A0A1L8DGA0   A0A2P8YU76   T1PAM4   A0A2J7QHW3   A0A1Y1KXF5   A0A1I8QAZ4   A0A0P6INT1   A0A1I8N5Y1   A0A1Q3EWX4   A0A034VY07   A0A067RI80   B4LXU2   U5EVT2   B3P7J1   A0A0P6FTT3   Q95WY3   B3M226   B4HE83   A0A023ETB5   B4R013   B4PLP7   B0W8P5   J9EAN1   A0A0K8V9S8   B4K5D0   A0A1W4VQ82   B4JTX8   Q8IGT5   A0A2M3Z060   W5J7D4   A0A1A9XMB1   A0A1B0BWG9   A0A0M4ES87   A0A1B0A7V7   A0A0P5RT47   A0A0P6GKX5   E0VA68   A0A0P5TNE1   A0A0P5PJ64   A0A2M3Z0B4   A0A0P6EAD4   B4NH63   A0A1W4WFQ9   A0A0P6GS35   A0A0P5AIL9   A0A0P4YAF5   A0A0P5ZQ27   A0A1A9V8R5   A0A0P6A751   E9H9X9   A0A0P5ZR14   A0A0N8B782   A0A1B0FHV5   A0A0N8DFN1   A0A0P5JIR2   A0A0P6HUQ9   A0A0P6FSR6   A0A2M4BL30   A0A1J1IL23   A0A182K2N3   A0A0P5LFX3   A0A0N8A4Q0   A0A154NXA6   A0A0P5H479   A0A0P5MVE1   A0A0N8DYH1   A0A2M4BLT0   A0A0P5ISR4   B4G4N7   A0A0P5KW57   A0A0P5MFA5   A0A0N8DXV9   W8CDF5   A0A0P5MST9   A0A0P5PMZ9   A0A0P6EB88   A0A2M4A4R2   A0A1A9WNM4   T1EAH0   A0A0P5TU23   A0A0P5M929   A0A0N8E4J5   A0A182FST5   A0A0A1WJU2   A0A0P6FMA3  

PDB

5WYK     E-value=5.25803e-121,     Score=1112

KEGG

101737128    K14564 nucleolar protein 56 | (RefSeq) nucleolar protein 56

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0032040   GO:0030515   GO:0031428   GO:0003677   GO:0032968   GO:0005634   GO:0006367   GO:0016021  

Length:

462

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02228

Exp number, first 60 AAs:

0.00757999999999999

Total prob of N-in:

0.00175

outside

1  -  462

 

 

Pi

222.997442

Theta

167.370931

Tajima's D

1.396857

CLR

10.03633

CSRT

0.759762011899405

Interpretation

Uncertain