Gene

KWMTBOMO15540

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr26(+):2138030-2139755      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.4

CDS

ATGTTCTTTGTGGGATATGTTAAGTCTCTAGTCTACGCCGATAAGCCCGAAACGATTGACCACTTGGAGGACAACATTCGCCGCGCTATTGCCGACAGGGCTCTGAAACTGCAATCCTTTTTACTGGTGGTAGGACCTCTTGTCAGGGCGGTTCGCGGGTACCGCACCGTCTCGTTCGAGGCGGCGAGCGTACTCGCCGGGACGCCTCCCTGGGACTTGGAGGCGGAGGCGCTCGCTGCGGATTACGCGTGGCGATGCGATCTCCGCTCCAGGGGGGAGCCGCGTCCCGGCGCGGCGGAAGTTCGAGCGCGGAAGCTTCAATCTCGGCGTGTCGTACTCGAGGCGTGGTCTCGCCGCCTGGCGGACCCCGCCTACGGGCGGCGGACCGTCGAGGCGATCCGCCCGGTCCTCTCGGGCTGGGTGAATCGCGACCGAGAACGTCTCACCTTCCGAGCGACGCAGGTGCTAACGGGACACGGCTGTTTCGGTCGCTACCTGCACCTCATCGCCCGGAGGGAGCCGACGCCGAAGTGCCACCACTGCAGTGGTTGCAACGAGGACACAGCGGAGCACACGCTTGCGTACTGCCCCGCTTTCGCGGAGCAGCGCCGCGTCCTCGTTGCAAAAATAGGACCGGACTTGTCGTTTCCGACCGTCGTGGCTACGATGCTCGGCAGCGTCGAGTCCTGGCAGGCGATGCTCGACTTCTCCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAACGGGAGAGGGAGAGCTCTTCTCCCCTCTCGTCGCCGTGCCGCCGTCGCTGA

Protein

MFFVGYVKSLVYADKPETIDHLEDNIRRAIADRALKLQSFLLVVGPLVRAVRGYRTVSFEAASVLAGTPPWDLEAEALAADYAWRCDLRSRGEPRPGAAEVRARKLQSRRVVLEAWSRRLADPAYGRRTVEAIRPVLSGWVNRDRERLTFRATQVLTGHGCFGRYLHLIARREPTPKCHHCSGCNEDTAEHTLAYCPAFAEQRRVLVAKIGPDLSFPTVVATMLGSVESWQAMLDFSESTISQKEAAERERESSSPLSSPCRRR

Uniprot

Q5KTM7   Q868Q4   A0A0J7KCI1   A0A2W1BDU5   A0A2W1B333   A0A2W1BSQ5   + More
A0A0J7N1D9   Q8MY27   A0A2W1C3J5   A0A3L8DDS1   Q8MY33   Q8MY31   A0A0J7MZM4   A0A0J7KJB9   Q8MY35   A0A2H1WNZ5   A0A0J7N7H9   A0A0J7KS67   A0A3S2N998   A0A0J7KIY5   A0A0J7N7S8   A0A0J7MY07   A0A0J7JXN3   O01419   A0A0J7KCQ3   A0A0J7KIW1   A0A0J7KJ07   A0A0J7NEG9   A0A194R5D3   A0A0J7KJG6   A0A0J7KYD2   A0A0J7KM81   A0A0J7KQK3   A0A0J7JZF7   A0A0J7JZ13   A0A0J7KLT9   A0A0J7KIM6   A0A0J7KJH4   A0A0J7KHX7   A0A3L8DDV9   A0A0J7KCR7   A0A3L8D2G3   J9KZ24   A0A0Q9WRU0   J9KLZ3   A0A0J7MX22  

Pubmed

12644555    28756777    30249741    9092665    26354079    17994087    + More

EMBL

AB126050    BAD86650.1    AB090825    BAC57926.1    LBMM01009501    KMQ88083.1    + More
KZ150308    PZC71477.1    KZ150386    PZC71062.1    KZ149950    PZC76665.1    LBMM01012027    KMQ86470.1    AB078935    BAC06462.1    KZ149896    PZC78733.1    QOIP01000009    RLU18544.1    AB078930    BAC06454.1    AB078931    BAC06456.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    LBMM01006538    KMQ90523.1    AB078929    BAC06452.1    ODYU01009945    SOQ54696.1    LBMM01008861    KMQ88580.1    LBMM01003679    KMQ93242.1    RSAL01000481    RVE41577.1    LBMM01006954    KMQ90166.1    LBMM01008682    KMQ88705.1    LBMM01014132    KMQ85305.1    LBMM01024024    KMQ82631.1    D85594    BAA19776.1    LBMM01009494    KMQ88097.1    LBMM01006725    KMQ90373.1    LBMM01006662    KMQ90413.1    LBMM01006110    KMQ90925.1    KQ460685    KPJ12887.1    LBMM01006671    KMQ90407.1    LBMM01002052    KMQ95336.1    LBMM01005634    KMQ91349.1    LBMM01004272    KMQ92618.1    LBMM01019838    KMQ83439.1    LBMM01019839    KMQ83438.1    LBMM01005733    KMQ91252.1    LBMM01007036    KMQ90099.1    LBMM01006657    KMQ90417.1    LBMM01007088    KMQ90053.1    QOIP01000010    RLU18098.1    LBMM01009472    KMQ88117.1    QOIP01000031    RLU14697.1    ABLF02006132    CH963857    KRF98317.1    ABLF02023401    ABLF02029423    ABLF02060278    LBMM01014909    KMQ85000.1   

Proteomes

UP000036403    UP000279307    UP000283053    UP000053240    UP000007819    UP000007798    + More

PRIDE

Q5KTM7    Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF07776   zf-AD
PF00096   zf-C2H2
PF03372   Exo_endo_phos
PF17919   RT_RNaseH_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR041577   RT_RNaseH_2       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q5KTM7   Q868Q4   A0A0J7KCI1   A0A2W1BDU5   A0A2W1B333   A0A2W1BSQ5   + More
A0A0J7N1D9   Q8MY27   A0A2W1C3J5   A0A3L8DDS1   Q8MY33   Q8MY31   A0A0J7MZM4   A0A0J7KJB9   Q8MY35   A0A2H1WNZ5   A0A0J7N7H9   A0A0J7KS67   A0A3S2N998   A0A0J7KIY5   A0A0J7N7S8   A0A0J7MY07   A0A0J7JXN3   O01419   A0A0J7KCQ3   A0A0J7KIW1   A0A0J7KJ07   A0A0J7NEG9   A0A194R5D3   A0A0J7KJG6   A0A0J7KYD2   A0A0J7KM81   A0A0J7KQK3   A0A0J7JZF7   A0A0J7JZ13   A0A0J7KLT9   A0A0J7KIM6   A0A0J7KJH4   A0A0J7KHX7   A0A3L8DDV9   A0A0J7KCR7   A0A3L8D2G3   J9KZ24   A0A0Q9WRU0   J9KLZ3   A0A0J7MX22  

KEGG

101743754    no KO assigned | (RefSeq) uncharacterized LOC101743754

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676  

Length:

264

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05863

Exp number, first 60 AAs:

0.03089

Total prob of N-in:

0.01734

outside

1  -  264

 

 

Pi

65.862297

Theta

67.348864

Tajima's D

0.006684

CLR

0

CSRT

0.369081545922704

Interpretation

Uncertain