Gene

KWMTBOMO15534  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010744

Annotation

PREDICTED:_zinc_finger_protein_on_ecdysone_puffs_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr26(-):2035805-2044369      View in EpiBrowser

Full name

Zinc finger protein on ecdysone puffs      

Location in the cell

Nuclear   Reliability : 4.546

CDS

ATGGCGAACCGCAGACCACAACCGGGACGCCGTACGGACTTCGGTAGAAACGACCGTGGGAAAAACTTTCCACGTAACAATGTGTCCCCGTGGCAGTCCGGAGGCCCGGGGGAGCGGTTACCCAACCTTTTCCCTCTGGCTGGAGGCTCCGCCGAGGCCACGCTGGCTCTTGCCAGTAACCTCCTTAATTTGTTCCAACCGAAGCAGAACCCGGTCCCATCGCTCCTAGACATGCCCATTAGAAGGGACTTTGGGCCTAATATGGGTCGGTTTGACCGTGGGTATGAGCCTAATAGGATGGGCAATCATGGTAATTTCCGGCGTACGGGAAATTACAATCGCGCTGGTGAGCGTATCAACATGAATCGTAAACCGTTCAGGCCCAATGAAGGGCAACGGCAGCATAACAAGAACTCCCCGAAAAAGGAAACCGATTCTAAAGCTAAGCCTGTTAAGGAGAGTGAACAAGAAGAGAAGACTACTGAGACTGACAAACCTGAAAATGAGAGAAAAGCGCCGGAAGAGGATGAAAAGCAAGATGTTCCTAAAACGCGCTATGATGACATCAACTCAAAGCTGCTGAAATGTCACATCTGCCACAAGAGCATGTGGGATGGACGTTCATTTGAGAATCATCTCAGTGGAAGAGCTCATGCCATTATGATGCAGAAGACTGTTGAGAGCTATGCTCTTACTGCTGATACAATGAGACAAGAATATAAGATTCGTGAGATGAAACGCACCCGCAAATCTGGTCAGCAACCAGCTAGAGACTTCTACTGTGCTATGTGTGATATGTATGCAGCCAATGGAGCAGCTCACCGGACTACCGTTGGACACCGGAAGCTTAAGAAATACCTACATCCCTTCTGTAATACTTGTCACAAGGAGTTGCCAACTAGAATTGAGTTAGATGAACACCGTCTCACTGCTGAACATTTGCGTGCAATTCAAGATAAACAAGATGTACTTTCAAAGCCCAAGCCTGAAATGTTGATGATTTCAACTTTGGGCATGGAGCAGTCATACCTGTGTGAGCGTCGTCAGCGTAGACCACGCAGGGATGATGTTCAAGAAGAGAAGCATGATGATAATGATAAAACTGATGAACAGCAAACTGACACTGAAAACAAAGAAAAGATTGAAAATGAAGATCAAGAGATGAAAGATGTGAGTGAGAAGGCTGACAGTAAACCTGTTGATGATGAAAAGGTCATCCTGGACTTCAAAGAAGATGATGATCTCAGCTATGTTACTCAGGATATGTTCCCAAGTTACAGTACGGAACGTGGTGTTGGTCAATCGTTCCTGACTGAGTTCCGCTGCATACAATGCAAGCTGTGCAAGAAGCTCCTTGACTCGCAGGAAACTGCTGATGTGCACTTGAGAACCTGGAGACATCACGTTTTCTTCTTGAAGATGCTTTCTGAGAAGACTGGACACAAACCAGCGGGAACTCAATCCACTGAGAATTCAAATGGGAAACGTCCTTCTGAACGCAACGATCAATCTGGTAACTGGAAGAGACGCAAGACATCTTCCGATCATGAAGGACAAGATTATGAAAATGATAATGACAACGACAATGACAATGACAATGAACATGCTAATGAATATACAGACACAAACCGTGATGAACAATTTGATGACGGTATTCCAAATAACGATGATCTTGAAGATTGGGAGCAGTCGGTTGATGAAATACTGGAAGATGAGAAGAAAGCCCAAGAAGAACCTGAAGCGACAGCCGAAATCGAGGATCCAGTAGAAGAGAAGCCTGAAGTAGCGGAAGTAATTGAACAGCCCCCAGAAAAAGAAAAAAGTCCTCAATTAGCTCTACCCGTGCCAGATGTGAAACCGAAACCCTCACCGAGAGCTAGAGCACGCGGTAGAGGCAGGGGCCGTGGCAGATATTAG

Protein

MANRRPQPGRRTDFGRNDRGKNFPRNNVSPWQSGGPGERLPNLFPLAGGSAEATLALASNLLNLFQPKQNPVPSLLDMPIRRDFGPNMGRFDRGYEPNRMGNHGNFRRTGNYNRAGERINMNRKPFRPNEGQRQHNKNSPKKETDSKAKPVKESEQEEKTTETDKPENERKAPEEDEKQDVPKTRYDDINSKLLKCHICHKSMWDGRSFENHLSGRAHAIMMQKTVESYALTADTMRQEYKIREMKRTRKSGQQPARDFYCAMCDMYAANGAAHRTTVGHRKLKKYLHPFCNTCHKELPTRIELDEHRLTAEHLRAIQDKQDVLSKPKPEMLMISTLGMEQSYLCERRQRRPRRDDVQEEKHDDNDKTDEQQTDTENKEKIENEDQEMKDVSEKADSKPVDDEKVILDFKEDDDLSYVTQDMFPSYSTERGVGQSFLTEFRCIQCKLCKKLLDSQETADVHLRTWRHHVFFLKMLSEKTGHKPAGTQSTENSNGKRPSERNDQSGNWKRRKTSSDHEGQDYENDNDNDNDNDNEHANEYTDTNRDEQFDDGIPNNDDLEDWEQSVDEILEDEKKAQEEPEATAEIEDPVEEKPEVAEVIEQPPEKEKSPQLALPVPDVKPKPSPRARARGRGRGRGRY

Description

May play a role in the process of early and late gene activation, or possibly in RNA processing, for a defined set of developmentally regulated loci.

Keywords

Alternative splicing   Chromosome   Complete proteome   DNA-binding   Metal-binding   Nucleus   Phosphoprotein   Reference proteome   Repeat   Zinc   Zinc-finger  

Feature

chain  Zinc finger protein on ecdysone puffs
splice variant  In isoform A and isoform C.

Uniprot

H9JMJ1   A0A2A4JPC2   A0A194PRC9   A0A212EN47   A0A2W1BQ08   A0A0N1IAJ1   + More
A0A3S2L6I4   A0A2H1VVL6   A0A1E1WL51   S4P9Z9   A0A0L7KU17   A0A1B0AI35   A0A1A9WT72   A0A1B0FHC2   A0A1B0B590   A0A1A9XCA1   B3M4S9   A0A0P8ZVJ2   A0A0Q5U4Y0   B3NHS9   B4J3J4   A0A0Q9XBK5   B4KZJ1   A0A0M4E838   A0A1I8P140   B4PJK9   A0A1I8P108   B4QNX7   A0A0J9RXF0   D5AEL0   A0A1W4VS92   A0A1W4W4A7   P41073-3   M9NG39   P41073   B4N4D6   B4LEZ0   A0A0Q9WIA0   U5EW84   A0A1S4FMA0   A0A182WS29   A0A182WML2   A0A182YBU3   A0A182HXS4   Q7Q967  

Pubmed

19121390    26354079    22118469    28756777    23622113    26227816    + More
17994087    17550304    22936249    1899840    10731132    12537572    12537569    18327897    12537568    12537573    12537574    16110336    17569856    17569867    25244985    12364791    14747013    17210077   

EMBL

BABH01016685    NWSH01000916    PCG73548.1    KQ459601    KPI93685.1    AGBW02013728    + More
OWR42908.1    KZ149936    PZC77149.1    KQ459910    KPJ19336.1    RSAL01000118    RVE46760.1    ODYU01004712    SOQ44887.1    GDQN01003473    JAT87581.1    GAIX01003479    JAA89081.1    JTDY01005801    KOB66610.1    CCAG010009787    CCAG010009788    JXJN01008649    JXJN01008650    CH902618    EDV40503.1    KPU78600.1    CH954178    KQS44021.1    EDV51944.1    CH916366    EDV96196.1    CH933809    KRG05836.1    EDW17918.1    CP012525    ALC42978.1    CM000159    EDW94697.2    CM000363    CM002912    EDX10879.1    KMZ00281.1    KMZ00283.1    BT124747    ADF28788.1    X56689    AE014296    AY118552    BT001867    AFH04488.1    CH964095    EDW79010.1    CH940647    EDW69159.1    KRF84211.1    GANO01003064    JAB56807.1    APCN01005343    AAAB01008905    EAA09673.4   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000283053    + More
UP000037510    UP000092445    UP000091820    UP000092444    UP000092460    UP000092443    UP000007801    UP000008711    UP000001070    UP000009192    UP000092553    UP000095300    UP000002282    UP000000304    UP000192221    UP000000803    UP000007798    UP000008792    UP000076407    UP000075920    UP000076408    UP000075840    UP000007062   

PRIDE

H9JMJ1    D5AEL0    P41073    M9NG39   

Pfam

PF12171   zf-C2H2_jaz

Interpro

IPR026811   CIZ1        + More
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR022755   Znf_C2H2_jaz       
IPR003604   Matrin/U1-like-C_Znf_C2H2       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9JMJ1   A0A2A4JPC2   A0A194PRC9   A0A212EN47   A0A2W1BQ08   A0A0N1IAJ1   + More
A0A3S2L6I4   A0A2H1VVL6   A0A1E1WL51   S4P9Z9   A0A0L7KU17   A0A1B0AI35   A0A1A9WT72   A0A1B0FHC2   A0A1B0B590   A0A1A9XCA1   B3M4S9   A0A0P8ZVJ2   A0A0Q5U4Y0   B3NHS9   B4J3J4   A0A0Q9XBK5   B4KZJ1   A0A0M4E838   A0A1I8P140   B4PJK9   A0A1I8P108   B4QNX7   A0A0J9RXF0   D5AEL0   A0A1W4VS92   A0A1W4W4A7   P41073-3   M9NG39   P41073   B4N4D6   B4LEZ0   A0A0Q9WIA0   U5EW84   A0A1S4FMA0   A0A182WS29   A0A182WML2   A0A182YBU3   A0A182HXS4   Q7Q967  

KEGG

101736594    no KO assigned | (RefSeq) zinc finger protein on ecdysone puffs

GO

GO:0003676   GO:0046872   GO:0008270   GO:0005703   GO:0048024   GO:0003727   GO:0003697   GO:0071013   GO:0005694   GO:0000398   GO:0071011   GO:0003677   GO:0016020   GO:0006810   GO:0004672   GO:0004703   GO:0007165   GO:0006418   GO:0003707   GO:0006281   GO:0006259  

PANTHER

PTHR15491  

Subcellular location

Nucleus  
Chromosome  

Length:

638

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01858

Exp number, first 60 AAs:

0.01496

Total prob of N-in:

0.00283

outside

1  -  638

 

 

Pi

250.354291

Theta

182.76607

Tajima's D

0.569136

CLR

1.220321

CSRT

0.540022998850057

Interpretation

Uncertain