SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15529
Pre Gene Modal
BGIBMGA010798
Annotation
PREDICTED:_putative_nuclease_HARBI1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.647
 

Sequence

CDS
ATGGCCGGAACTTTAATGTCTAGTGATAGTGACAGTGATCTTGAAGTGCTGGAGCAGCTTTCAGATTGGGATAATGAGGATACTGATGGAGACGAAGGTCCATCAGGATCACGAAGAAGCTATTGCCGTATTGATTATACTCAGTGCCTAACTGATGCTGAATTTACATTTAGATTTCGTCTTAACAAAGCTGCGGTACAGTTACTTTTATCGGAAATAATGCCACATGTAAAAGTAACCTGCAATCGAAATCATGGAGTTGCACCACTTCACCAGCTACTCCTAACCCTCCGATTTTATGCATTGGGTACAATGCTAATTTCTGTAGCGGATTTCGTGGGCGTGTCAAAATCGACCGCCAGCAGAATAGTTCACGATATATCTGGAGCTATAGCCATACTGTACAATAAATACATTGTAATGCACCCTAATCACGTGGACAAGTTTTTTCAATATGGTCAGTTCCCACGTGTCCTGGGTGCAATTGACTGCACTCACATACGGATACAATCTCCAAATCACACAATAGGCGAAGAGTTCAGAAACCGAAAAGGCTACTTTTCATTAAATGTTCAAGCAGTTTGTGATGCTGATTTGAAGTTTATGAATGTTGTAGCCCGGTGGCCTGGTTCTGCACATGATGCTACTATATTTAATAATTCTGTTTTAAGAGCTCAGTGTGAAGCTGGGACTTTTGGGAATCGCTGGTTGCTGGCTGACAGTGCCTATCCAAACAGATGCTATATGTTGACACCAATTTTAAATCCTAGTGCTAGAAATGAACAAAAATATAATGATGCACATATTGCAACAAGAAACCTTATTGAAAGAACCTTCGGTGTATGGAAGCGACGTTTTCCAGTGATCTCATTATCTATGCGCTTATCACTAGAAAACATTCAGAAAGTTATAATAGCTACAGCAGTTCTACACAACATCTGTAGAATTCATAATTTGCAAGAAACCCCAGCAGAGGTACAAATACCATTCCAAGCAATGGATGATGATGATCTTCAAACTGTGGGAGTACAAGATAGCAGGGATAGAACAGAATTAATAGAAGCCTACTTCTCAACTATGTAG
Protein
MAGTLMSSDSDSDLEVLEQLSDWDNEDTDGDEGPSGSRRSYCRIDYTQCLTDAEFTFRFRLNKAAVQLLLSEIMPHVKVTCNRNHGVAPLHQLLLTLRFYALGTMLISVADFVGVSKSTASRIVHDISGAIAILYNKYIVMHPNHVDKFFQYGQFPRVLGAIDCTHIRIQSPNHTIGEEFRNRKGYFSLNVQAVCDADLKFMNVVARWPGSAHDATIFNNSVLRAQCEAGTFGNRWLLADSAYPNRCYMLTPILNPSARNEQKYNDAHIATRNLIERTFGVWKRRFPVISLSMRLSLENIQKVIIATAVLHNICRIHNLQETPAEVQIPFQAMDDDDLQTVGVQDSRDRTELIEAYFSTM

Summary

EMBL
RSAL01000057    RVE49808.1    NWSH01005652    PCG64078.1    JTDY01003471    KOB69505.1    + More
JTDY01002978    KOB70380.1    ODYU01004776    SOQ45014.1    BABH01027007    GEZM01038551    JAV81614.1    GEZM01038550    JAV81615.1    ABLF02019815    ABLF02019816    ABLF02061340    JTDY01000543    KOB76728.1    JTDY01001465    KOB73799.1    APGK01040149    KB740975    ENN76582.1    ABLF02020738    ABLF02022234    ABLF02058482    RSAL01001934    RVE40628.1    ABLF02017542    GEZM01035464    GEZM01035462    JAV83213.1    ABLF02029655    ABLF02030019    ABLF02016012    ABLF02055237    RSAL01000416    RVE41817.1    ABLF02006541    ABLF02042859    AK341014    BAH71500.1    ABLF02019988    ABLF02066411    GEZM01017851    GEZM01017841    GEZM01017840    JAV90428.1    ABLF02036739    GGMR01007355    MBY19974.1    ABLF02008641    ABLF02011808    GEZM01080383    JAV62179.1    ABLF02016431    PYGN01000260    PSN49845.1    ABLF02006612    GEZM01076717    JAV63704.1    ABLF02012895    ABLF02011053    APGK01005289    KB736163    ENN83248.1    AK341464    BAH71852.1    ABLF02008545    ABLF02003846    GEZM01039795    GEZM01039794    GEZM01039793    GEZM01039792    GEZM01039791    GEZM01039790    GEZM01039789    JAV81183.1    ABLF02012281    ABLF02058185    GBHO01000839    JAG42765.1    ABLF02038239    APGK01006977    KB737050    ENN83098.1    ABLF02034876    GEBQ01030196    JAT09781.1    ABLF02024993    ABLF02024998    ABLF02025000    ABLF02016385    JTDY01000151    KOB78582.1    KQ971356    EFA09128.1    KB632043    ERL88242.1    ABLF02063305    LBMM01014280    KMQ85248.1    GAIX01003761    JAA88799.1    ABLF02011428    KB631844    ERL86663.1    ABLF02035722    GEZM01088054    JAV58326.1    ABLF02008686    APGK01006027    KB736544    ENN83189.1    GEZM01016480    JAV91267.1    GEZM01078171    GEZM01078169    GEZM01078168    GEZM01078162    GEZM01078161    GEZM01078158    GEZM01078157    GEZM01078155    GEZM01078153    GEZM01078152    GEZM01078149    GEZM01078144    GEZM01078140    GEZM01078137    JAV62920.1    GBHO01005857    GDHC01007230    JAG37747.1    JAQ11399.1    DS497765    EFA11633.1    ABLF02007356    BABH01011318    ADTU01026491    ABLF02007265    ABLF02010299    ABLF02015906    GDHC01016852    JAQ01777.1    ABLF02003216    PYGN01000153    PSN52639.1    ABLF02017360    GGLE01005627    MBY09753.1    ABLF02033619   
Pfam
PF13359   DDE_Tnp_4        + More
PF13843   DDE_Tnp_1_7
PF16087   DUF4817
PF05699   Dimer_Tnp_hAT
Interpro
IPR027806   HARBI1_dom        + More
IPR026103   HARBI1_animal       
IPR029526   PGBD       
IPR032135   DUF4817       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
SUPFAM
SSF53098   SSF53098       

Ontologies

Topology

Length:
360
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.21041
Exp number, first 60 AAs:
0.00012
Total prob of N-in:
0.03932
outside
1  -  360
 
 

Population Genetic Test Statistics

Pi
368.701904
Theta
209.822162
Tajima's D
2.484048
CLR
29.994715
CSRT
0.943602819859007
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号