SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15520  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA010751
Annotation
Bicaudal_[Operophtera_brumata]
Full name
Transcription factor BTF3       + More
Nascent polypeptide-associated complex subunit beta      
Location in the cell
Nuclear   Reliability : 3.194
 

Sequence

CDS
ATGAACAGCGAAAAATTAAAGAAACTCCAGTCGCAAGTACGCATCGGCGGTAAGGGCACACCGAGACGCAAGAAGAAGGTTGTTCACGTTACTGCGGCCACAGATGACAAAAAACTGCAGTCATCGCTCAAAAAGTTGTCAGTGAACACAATTCCTGGCATCGAAGAGGTAAATATGATCAAAGAGGACGGTACTGTGATACACTTTAACAACCCGAAGGCACAAGCGTCGCTGGCCGCGAACACGTTCGCGATTACCGGACACGGGGAGAATAAGCAGACCACAGAGATGCTCCCGGGTATCCTCAGCCAGCTCGGACCCGACGGCTTGAACCGACTGAAAAGGATTGCGTCGAGTGTTGCCGCGCCTAAGCCACTCGAGGAAGACGACGAGGTACCTAACCTCGTCGGCAACTTTGACGAAGCCTCAAAACAAGAGGCCAAGGAGGTTGTAACTAACGAGAAGGAGAAGGAGAAAGAAAAGAAACCCGAATCAGAAACCAAAGCTGACAAGAAAACTGATTAA
Protein
MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQSSLKKLSVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEASKQEAKEVVTNEKEKEKEKKPESETKADKKTD

Summary

Subunit
Part of the nascent polypeptide-associated complex (NAC).
Similarity
Belongs to the NAC-beta family.
EMBL
BABH01016642    JTDY01000840    KOB75700.1    KZ150330    PZC71360.1    NWSH01001651    + More
PCG70540.1    GDQN01011532    GDQN01006497    JAT79522.1    JAT84557.1    MG992432    AXY94870.1    ODYU01006046    SOQ47550.1    GAIX01014101    JAA78459.1    KQ459601    KPI93673.1    KQ460952    KPJ10368.1    AK402674    BAM19296.1    PYGN01000556    PSN44298.1    KK107260    QOIP01000001    EZA54048.1    RLU26302.1    GBYB01008629    JAG78396.1    GECZ01023803    GECZ01003715    JAS45966.1    JAS66054.1    GEDC01028072    GEDC01014986    JAS09226.1    JAS22312.1    GEBQ01006634    JAT33343.1    NEVH01024946    PNF16533.1    GL442548    EFN63323.1    AK417538    BAN20753.1    LBMM01004343    KMQ92535.1    KK852498    KDR22703.1    GL771706    EFZ09605.1    KQ976490    KYM83450.1    ADTU01018057    KQ981424    KYN41802.1    KQ978782    KYN28409.1    GL888624    EGI58955.1    KQ982482    KYQ55963.1    GL446193    EFN88288.1    KQ977475    KYN02502.1    KK854536    PTY16674.1    DS235165    EEB12774.1    GBHO01000224    GBRD01006063    JAG43380.1    JAG59758.1    KQ971371    EFA10045.1    NNAY01004979    OXU17143.1    KQ414731    KOC62425.1    KQ435750    KOX76294.1    GDKW01002638    JAI53957.1    GBGD01003246    JAC85643.1    ACPB03019209    GAHY01002349    JAA75161.1    GBBI01000496    GEMB01003648    JAC18216.1    JAR99570.1    JR049949    AEY61133.1    GDJX01021576    JAT46360.1    GFTR01002806    JAW13620.1    DQ673437    ABG82010.1    GDHC01019475    JAP99153.1    GEZM01097404    GEZM01097403    JAV54225.1    GECL01003551    JAP02573.1    KQ434939    KZC12188.1    APGK01029566    BT127798    KB740735    KB632302    AEE62760.1    ENN79200.1    ERL91772.1    AJVK01006907    AY258589    AAP33157.1    GALX01003302    JAB65164.1    AJWK01006337    GFDF01007892    JAV06192.1    KZ288293    PBC28996.1    ABLF02008448    DQ413198    AK339865    ABD72666.1    BAH70572.1    GGMR01020023    MBY32642.1    GFDF01007895    JAV06189.1    GFDF01007950    JAV06134.1    AJVK01007809    AY826133    AAV90705.1    JXUM01000446    DQ440091    CH478527    CH477859    ABF18124.1    EAT32831.1    EAT35559.1    GANO01003690    JAB56181.1    DS231892    EDS44077.1    GAMD01003125    JAA98465.1    GGFM01006485    MBW27236.1    GGFK01001047    MBW34368.1    ADMH02002104    GGFL01004582    ETN59060.1    MBW68760.1    JH818074    EKC35855.1    PZQS01000010    PVD23943.1    EZ423518    ADD19794.1    JXJN01024375    ATLV01023587    KE525344    KFB49342.1    GEDC01013852    JAS23446.1    GFDG01000375    JAV18424.1    GFDL01010468    JAV24577.1    CCAG010005890    AF160890    AAD46830.1    JRES01000655    KNC29546.1    BT081215    ACO15639.1    BT077251    ACO11675.1    BT081005    ACO15429.1    JYDL01000059    KRX19442.1    JYDW01000147    KRZ54043.1   
Pfam
PF01849   NAC        + More
PF14952   zf-tcix
Interpro
IPR039370   BTF3        + More
IPR038187   NAC_A/B_dom_sf       
IPR002715   Nas_poly-pep-assoc_cplx_dom       
IPR029269   Zf-tcix       
IPR026049   C2orf42       
Gene 3D
PDB
3LKX     E-value=2.11403e-19,     Score=230

Ontologies

Topology

Length:
174
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00043
Exp number, first 60 AAs:
0
Total prob of N-in:
0.25005
outside
1  -  174
 
 

Population Genetic Test Statistics

Pi
193.107525
Theta
194.306613
Tajima's D
-0.207073
CLR
161.028119
CSRT
0.309384530773461
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 EDGTVIHFNNPK 100.00 6e-14
26280517 ISTAENCENEQIIVSDPK 100.00 1e-12
26280517 KIPNFAGIK 100.00 1e-12
28556443 QTTEMLPGILSQLGPDGLNR 100.00 5e-08
28556443 QTTEMLPGILSQLGPDGLNR 100.00 5e-08
28556443 QTTEMLPGILSQLGPDGLNR 100.00 5e-08
28556443 QTTEMLPGILSQLGPDGLNR 100.00 5e-08
28556443 QTTEMLPGILSQLGPDGLNR 100.00 5e-08
28556443 LSVNTIPGIEEVNMIK 100.00 5e-08
28556443 LSVNTIPGIEEVNMIK 100.00 5e-08
28556443 TIPGIEEVNMIK 100.00 8e-07
28556443 VVAAPVAAPVVPVAAR 100.00 8e-07
28556443 LSVNTIPGIEEVNMIK 100.00 0.004
28556443 EDGTVIHFNNPK 100.00 0.004
28556443 IASSVAAPKPLEEDDEVPNLVGNFDEASK 100.00 0.004
26822097 VVHVTAATDDKK 100.00 0.004
26280517 ISVIVPR 100.00 0.004
25044914 ISVIPVR 100.00 0.004
26822097 QTTEMIPGIISQIGPDGINR 100.00 0.009
26280517 EAPHAVIEIDNYGMPFSR 100.00 0.009
25044914 EDGSIFPTDQSGK 100.00 0.009
28467696 EDGNTPVEQVFK 100.00 0.009
28556443 EDGTVIHFNNPK 100.00 0.009
28556443 AQASLAANTFAITGHGENK 100.00 0.009
28556443 AQASLAANTFAITGHGENK 100.00 0.009
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