Gene

KWMTBOMO15517

Annotation

hypothetical_protein_M514_27221_[Trichuris_suis]

Location

Bomo_Chr26(+):1498496-1500808      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.421 Nuclear   Reliability : 1.532

CDS

ATGTGGTACGAATATTTTCCTAATATTACACCTATTGAATGGGCTACACCCACAGTTAACATTCTGAAATCTACAGGGGAAATTAGGATATGTGGAGACTACAGAACTACACTTAATCCAGTACTTATTAAACATCTACACCCAGTTCCGATTTTCGATCAACTACGCCAAAATCTCGCAAACGGTAAATTATTTTCAAAAATAGACCTTAAAGACGCATACTTACAATTTGAAATAGCACCAGATTCGAAAAAGTACTTGACGTTGTCAACCCATAAAGGGTATTTCCAATACAATAGAATGCCTTTTGGAATATCGACTGCTCCTTCAATTTTTCAACATTTTCTGGATCAACTGCTAGGCGATATCACCAATGTAGCTGTATATTTTGACGACATAGCTATAGCAGGGAAAGATCTTTCAGAACATTTACAAACTTTATCTATTGTATTCGATCGCTTACAAAACGCTGGCCTAAAAGTTAATTTAAAGAAATATACAAAGAAATGCATAGCTTCTTCACAACCATTAATTGCATTTGACGAGAAACGTCCCCTTTATTTAGCATGTGACGCTTCCGAAAAGGGATTGGGTGCAGTATTATTCCACAAGGACTCGAACATAGAACAGCCAATTGCTTTTGCTTCAAGGAAACTACGACCAGCGGAAATGAAATATTCCGTTATTGATCGTGAAGCTTTAGCAATAGTATTTGGTATAAAAAAATTTGATCAGTACTTGAGAGGAACGAAATTTAATCTAGTTACGGACCATAAGCCTCTTATACATATTATGGGTGCACGCCGCAACCTTCCTAAACTAGCCAATAACCGATTGGTAAGATGGGCCCTAGTAGTGGGAAGTTATCAATATGACATTTACTACAGGAAAGGTGAAAATAACACATTAGCTGATTGCCTTTCCAGATTACCAAACCCTGAAACTGAACCCTCCGAGACAGAAGGGCTTGTACATAAAATAGATCTACGTCTTTTGAGCACTCGAATGACTGACCTTAACCTTTCAGAACAGTTACTTATGAAAACAACTGCAAAGGATCATATACTCACAAAAGTTTGTCAAAATTTAAAAACCGGCTGGAGAGAATCAGAATACAATCCAGAGATGAAACCATTCTACAGAAACCGGACTGAATTATCTGTTGAGAATAAGATACTTATGAGGCAAGGACGCATCGTTATACCTACAGCACTCCGAAAAGCCATTCTTACATACCTTCATCGAGGACACCCTGGCATTTCTGCTATGAAAGCACTTTCACGTTACTATGTTTGGTGGCCTAACCTTGACGAAGACATAGAATTATTTGTCAAGAAATGTACCAGATGCCAACAGAACCGCCCTTGTAATCCTGAACTTCCTGTATTTTCCTGGTCCATACCAGAAGAAGTATGGGAGAGAATCCATATCGACTTTGCTGGACCGTTCGAAGGATCGTATTGGTTGGTATTGTGCGACGCTCTCTCCAAATGGGTGGAAATACGACCGATGAAACACATCAACACCAGATCACTTTGTCTTACATTAGATAACATATTTTGTACATTTGGCTTACCAAAAATGATTATATCCGATAATGGACCCCAATTTACATCTTATGAATTTAAAGAATATTGCACAAAACAGTCTATTTTACATGTCACATCATCCCCATATCATCCTCGGACAAATGGGCTGGCAGAACGTTTAGTCAGAACATTCAAAAATAGAATGGCATCGGTAGACAACACAAATCTCGAGCGCCGACTATTAGAATTTCTGTTTACATACAGAAACACTCCGCACTCATCCACTGGTAAATCTCCAGCTGAGATGATGTTTGGAAGACAATTGAATTGCATACTTTCCAACATTCGGCCAGACAAAAGAAGGTTAATGCAGTATTTACAAGTAAAAGAAAATATAATAATGATAGGTAGCAAAAATGACAATGTGTTTGAAGTATATTTCAAATAA

Protein

MWYEYFPNITPIEWATPTVNILKSTGEIRICGDYRTTLNPVLIKHLHPVPIFDQLRQNLANGKLFSKIDLKDAYLQFEIAPDSKKYLTLSTHKGYFQYNRMPFGISTAPSIFQHFLDQLLGDITNVAVYFDDIAIAGKDLSEHLQTLSIVFDRLQNAGLKVNLKKYTKKCIASSQPLIAFDEKRPLYLACDASEKGLGAVLFHKDSNIEQPIAFASRKLRPAEMKYSVIDREALAIVFGIKKFDQYLRGTKFNLVTDHKPLIHIMGARRNLPKLANNRLVRWALVVGSYQYDIYYRKGENNTLADCLSRLPNPETEPSETEGLVHKIDLRLLSTRMTDLNLSEQLLMKTTAKDHILTKVCQNLKTGWRESEYNPEMKPFYRNRTELSVENKILMRQGRIVIPTALRKAILTYLHRGHPGISAMKALSRYYVWWPNLDEDIELFVKKCTRCQQNRPCNPELPVFSWSIPEEVWERIHIDFAGPFEGSYWLVLCDALSKWVEIRPMKHINTRSLCLTLDNIFCTFGLPKMIISDNGPQFTSYEFKEYCTKQSILHVTSSPYHPRTNGLAERLVRTFKNRMASVDNTNLERRLLEFLFTYRNTPHSSTGKSPAEMMFGRQLNCILSNIRPDKRRLMQYLQVKENIIMIGSKNDNVFEVYFK

Uniprot

A0A085MTP2   A0A0A9W826   A0A0A9W3I3   A0A2B4S0C2   A0A085MRU5   A0A146L9N5   + More
A0A224XI32   A0A085M406   A0A0C2JXZ5   A0A3P8REG6   A0A183BQV4   A0A0A9XIJ3   A0A0V0RWN6   A0A3P8NQC4   A0A0C2JFK2   A0A3B3B4L9   A0A0C2IHZ5   A0A3P8NEQ7   A0A3P8NV61   A0A0C2IU42   A0A1X7T719   A0A1X7STP0   A0A3B3HJL6   W4LMH6   A0A3B5BG14   A0A3P8Q506   A0A3B3TFN7   A0A147BII2   A0A1X7TWV5   A0A3Q1F281   A0A131XQT5   I3KY30   A0A1S3L075   A0A1E1XN56   A0A1X7VU64   A0A0V0WST9   A0A0V1M0R9   A0A0V0ZE23   A0A0V0RTT5   A0A3Q1GLI5   A0A147BIP4   W4Z9D5   A0A3B3H2N7   A0A2G8LRL0   A0A1X7TIE8   A2TGR5   A0A0V1C3T1   A0A085MQC7   A0A0V0VH72   A0A0V0US17   I3KYR6   A0A1A7WUZ7   A0A0V1KNI7   A0A131Y536   A0A147BJB1   A0A0V0USW3   A0A1X7U623   A0A0V1BVI1   A0A1A7YSF0   A0A2B4RSM3   A2TGR4   A0A0V1FKD1   A0A3P8VSE7   T2MJH3   A0A267G4Y1   A0A267H2K6   A0A2G8LB01   A0A1A8QZH2   A0A085N023   A0A090XCC9   A0A3R7DF32   A0A1S3SSU6   A0A0A9XFS1   A0A3Q1EQC9   A0A2B4S2I1   A0A1S3KHX3   A0A1B6LWG3   L7LTN5   A0A0V1CV78   A0A147BJE5   A0A146LWN6   A0A085LJR8   A0A0V0VH28   A0A0A9W0S7   A0A146NT21   A0A0V1DDI4   A0A147BK15   A0A267H2J3   A0A146XMZ2   A0A2B4R6J0   A0A1S3J391   A0A2R2MK13   A0A147BMH4   A0A0V1A810   A0A3P8QD94   A0A267F772  

Pubmed

24929829    25401762    26823975    25381665    29451363    17554307    + More
24476823    29240929    29652888    25186727    29209593    29023486    17694394    24487278    24065732    25970599    25576852    26383154   

EMBL

KL367659    KFD60588.1    GBHO01042589    JAG01015.1    GBHO01042596    JAG01008.1    + More
LSMT01000238    PFX22483.1    KL367712    KFD59941.1    GDHC01014693    GDHC01004534    JAQ03936.1    JAQ14095.1    GFTR01008725    JAW07701.1    KL363234    KFD51952.1    JWZT01000439    KII74358.1    GBHO01045651    GBHO01045644    GBHO01026684    GBHO01026679    JAF97952.1    JAF97959.1    JAG16920.1    JAG16925.1    JYDL01000067    KRX18868.1    JWZT01002984    KII68048.1    JWZT01004052    KII64969.1    JWZT01005674    KII60352.1    AZHX01001899    ETW98900.1    GEGO01004818    JAR90586.1    GEFM01006397    JAP69399.1    AERX01052799    AERX01052800    GFAA01002662    JAU00773.1    JYDK01000060    KRX78865.1    JYDO01000377    KRZ65389.1    JYDQ01000223    KRY10622.1    JYDL01000080    KRX17894.1    GEGO01004800    JAR90604.1    AAGJ04101977    MRZV01000005    PIK62810.1    EF199622    ABM90393.1    JYDI01000800    KRY43965.1    KL367976    KFD59423.1    JYDN01000036    KRX62859.1    JYDN01000181    KRX54086.1    AERX01039690    HADW01008367    SBP09767.1    JYDW01000348    KRZ48953.1    GEFM01002211    JAP73585.1    GEGO01004546    JAR90858.1    KRX54093.1    JYDH01000010    KRY40903.1    HADX01010638    SBP32870.1    LSMT01000343    PFX19819.1    EF199621    ABM90392.1    JYDT01000070    KRY86520.1    HAAD01006009    CDG72241.1    NIVC01000551    PAA81070.1    NIVC01000050    PAA92506.1    MRZV01000143    PIK57404.1    HAEH01013823    SBR98409.1    KL367587    KFD62819.1    GBIH01000761    JAC93949.1    NIRI01001153    RJW67559.1    GBHO01027659    JAG15945.1    LSMT01000232    PFX22695.1    GEBQ01020673    GEBQ01011946    JAT19304.1    JAT28031.1    GACK01009588    JAA55446.1    JYDI01000102    KRY52595.1    GEGO01004812    JAR90592.1    GDHC01007869    JAQ10760.1    KL363640    KFD45214.1    KRX62850.1    GBHO01042583    JAG01021.1    GCES01151725    JAQ34597.1    JYDI01000010    KRY59721.1    GEGO01004729    JAR90675.1    NIVC01000075    PAA91739.1    GCES01042893    JAR43430.1    LSMT01001659    PFX12008.1    GEGO01003414    JAR91990.1    JYDQ01000025    KRY20467.1    NIVC01001308    PAA69606.1   

Proteomes

UP000225706    UP000265100    UP000050741    UP000054630    UP000261560    UP000007879    + More
UP000001038    UP000019140    UP000261400    UP000261540    UP000257200    UP000005207    UP000087266    UP000054673    UP000054843    UP000054783    UP000007110    UP000230750    UP000054653    UP000054681    UP000054721    UP000054776    UP000054995    UP000265120    UP000215902    UP000265000    UP000085678   

Pfam

PF00665   rve        + More
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF17917   RT_RNaseH
PF00098   zf-CCHC
PF05147   LANC_like
PF00077   RVP

Interpro

IPR041588   Integrase_H2C2        + More
IPR036397   RNaseH_sf       
IPR000477   RT_dom       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR021109   Peptidase_aspartic_dom_sf       
IPR041373   RT_RNaseH       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR012341   6hp_glycosidase-like_sf       
IPR020464   LanC-like_prot_euk       
IPR007822   LANC-like       
IPR034128   K02A2.6-like       
IPR018061   Retropepsins       

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630       
SSF57756   SSF57756       

Gene 3D

3.30.420.10     2.40.70.10     1.50.10.10    

CDD

cd04794  euk_LANCL
cd05484  retropepsin_like_LTR_2

ProteinModelPortal

A0A085MTP2   A0A0A9W826   A0A0A9W3I3   A0A2B4S0C2   A0A085MRU5   A0A146L9N5   + More
A0A224XI32   A0A085M406   A0A0C2JXZ5   A0A3P8REG6   A0A183BQV4   A0A0A9XIJ3   A0A0V0RWN6   A0A3P8NQC4   A0A0C2JFK2   A0A3B3B4L9   A0A0C2IHZ5   A0A3P8NEQ7   A0A3P8NV61   A0A0C2IU42   A0A1X7T719   A0A1X7STP0   A0A3B3HJL6   W4LMH6   A0A3B5BG14   A0A3P8Q506   A0A3B3TFN7   A0A147BII2   A0A1X7TWV5   A0A3Q1F281   A0A131XQT5   I3KY30   A0A1S3L075   A0A1E1XN56   A0A1X7VU64   A0A0V0WST9   A0A0V1M0R9   A0A0V0ZE23   A0A0V0RTT5   A0A3Q1GLI5   A0A147BIP4   W4Z9D5   A0A3B3H2N7   A0A2G8LRL0   A0A1X7TIE8   A2TGR5   A0A0V1C3T1   A0A085MQC7   A0A0V0VH72   A0A0V0US17   I3KYR6   A0A1A7WUZ7   A0A0V1KNI7   A0A131Y536   A0A147BJB1   A0A0V0USW3   A0A1X7U623   A0A0V1BVI1   A0A1A7YSF0   A0A2B4RSM3   A2TGR4   A0A0V1FKD1   A0A3P8VSE7   T2MJH3   A0A267G4Y1   A0A267H2K6   A0A2G8LB01   A0A1A8QZH2   A0A085N023   A0A090XCC9   A0A3R7DF32   A0A1S3SSU6   A0A0A9XFS1   A0A3Q1EQC9   A0A2B4S2I1   A0A1S3KHX3   A0A1B6LWG3   L7LTN5   A0A0V1CV78   A0A147BJE5   A0A146LWN6   A0A085LJR8   A0A0V0VH28   A0A0A9W0S7   A0A146NT21   A0A0V1DDI4   A0A147BK15   A0A267H2J3   A0A146XMZ2   A0A2B4R6J0   A0A1S3J391   A0A2R2MK13   A0A147BMH4   A0A0V1A810   A0A3P8QD94   A0A267F772  

PDB

4OL8     E-value=1.0207e-20,     Score=249

KEGG

105842438    no KO assigned | (RefSeq) uncharacterized protein K02A2.6-like

GO

GO:0015074   GO:0003676   GO:0004190   GO:0008270   GO:0016874   GO:0016021   GO:0003824   GO:0051536   GO:0051537   GO:0043565   GO:0003677   GO:0003707   GO:0006281   GO:0006259  

Length:

658

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00872999999999998

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.00068

outside

1  -  658

 

 

Pi

239.819761

Theta

144.17596

Tajima's D

2.000867

CLR

11.637196

CSRT

0.87935603219839

Interpretation

Uncertain