SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15514
Pre Gene Modal
BGIBMGA010753
Annotation
reverse_transcriptase_[Bombyx_mori]
Full name
Probable RNA-directed DNA polymerase from transposon X-element       + More
Probable RNA-directed DNA polymerase from transposon BS      
Alternative Name
Reverse transcriptase
Location in the cell
Mitochondrial   Reliability : 1.187 Nuclear   Reliability : 1.459 PlasmaMembrane   Reliability : 1.481
 

Sequence

CDS
ATGCCAATGGCCATTACTTTACCAGAAACATCTTGCAATCGCCTGAAAATTGGTGAAAATTGGTTCGATAAAAAAGTTGTGTGGGCTCAATCCGGAAGACCGTACAATTTGAACGTTCACAAGTCAACGAACTCTTTATTCTTCAGTTACTCAACCCCTGAAACATATTCGGATTTAGATTTTCAATTGGTGACCATTAATTTGGATACCGGCGAGAAACATACCATAGCTGGAATAAGAGGCGGATGCTCTGTTGCGATAGATGAAGTTAATGATGAAATTTATCTAGGAGGCACCGACGGTATATACAAATACAACATGCTGACCAGACTAGCAGATTTCTATAAAGAAAAAGGAAAGAATATATGGTCGCTGTTCTACAAAAAGAATTTGTTCTACATCAGTTATCCAGATCAAAAATTACATATTGAAATCGATGAAAAATTTCCGCTAGTCGAAGAGTTTGAGAATATCGAAATGACCCATTTTCACGTTACGTCCGATAACTATATATATTTCGCTAATAAGACCGGCCTATTTAAATATAACAGTAAAGAAATGCTCTTTGAATTGATCAATCATCTAATTACTGTTAGACAGATTGTCGAAGACGGTGACGGTGAGTTGTACGTATGCACAAATGTCGGGGTTTATATACTGACTATAGAAGGCATGGTGAAAATTTTAAACGTAAAAAACCTGTACGGCTTAGCATTCGACAGAGACAATAATCTTATATATTCAGACGAGAAAAGAATAGTTAAATTATTGTATAGCGAGAAAGGTTGTCTGAGTCATAAAGAGTGGGTAGACTCCGTAACGCCACAGTATAAAATGGCGGTACGTGGATGGAGTCGTGGCAACTATAACATGGTCAGGAACGACAGGCTCTCTGCCCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCAAGGCGTTGCTCGGTATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGGTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCTCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCTGGTGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCTAAGGGCATTCTTATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGTTAGCTGTCGGGGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCAATTCGGAAATACATGAAGTCAGCGTCGGAACGATACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGATGCCTTCAGCTCTAATACTAGGGGCAGGCTTAGGGACCCCGGTAACCGTACTCGTCGAACTCGACAAAGAGGTCGACGTGCAACCTAA
Protein
MPMAITLPETSCNRLKIGENWFDKKVVWAQSGRPYNLNVHKSTNSLFFSYSTPETYSDLDFQLVTINLDTGEKHTIAGIRGGCSVAIDEVNDEIYLGGTDGIYKYNMLTRLADFYKEKGKNIWSLFYKKNLFYISYPDQKLHIEIDEKFPLVEEFENIEMTHFHVTSDNYIYFANKTGLFKYNSKEMLFELINHLITVRQIVEDGDGELYVCTNVGVYILTIEGMVKILNVKNLYGLAFDRDNNLIYSDEKRIVKLLYSEKGCLSHKEWVDSVTPQYKMAVRGWSRGNYNMVRNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIKALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRGPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSGALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSNTRGRLRDPGNRTRRTRQRGRRAT

Summary

Catalytic Activity
a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)
Cofactor
Mg(2+)
Mn(2+)
Miscellaneous
At least 30 copies of X-element are present in the genome and some elements are polymorphic between different strains.
Keywords
Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  
Feature
chain  Probable RNA-directed DNA polymerase from transposon X-element
EC Number
2.7.7.49
EMBL
U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005299    JAB63167.1    GALX01005359    JAB63107.1    KQ971729    KYB24751.1    ABLF02042518    ABLF02057746    GBBI01004395    JAC14317.1    GGMR01018716    MBY31335.1    GGMS01006359    MBY75562.1    GBBI01004571    JAC14141.1    GFTR01008262    JAW08164.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01006736    PNF36716.1    GFTR01008279    JAW08147.1    ABLF02034467    ABLF02024246    GGMS01002992    MBY72195.1    NEVH01021205    PNF19912.1    NEVH01011985    PNF31054.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    GGMR01003407    MBY16026.1    GFTR01008251    JAW08175.1    GFTR01008256    JAW08170.1    GFTR01008271    JAW08155.1    NEVH01017470    PNF24199.1    GFTR01008261    JAW08165.1    GGMR01016905    MBY29524.1    NEVH01016302    PNF25823.1    NEVH01020940    PNF20481.1    ABLF02023911    AF237761    AAF81411.1    GEZM01084969    JAV60363.1    NEVH01026386    PNF14434.1    GGFJ01001858    MBW50999.1    KK119692    KFM76444.1    GFTR01008257    JAW08169.1    GGFJ01001857    MBW50998.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GFTR01008151    JAW08275.1    RPOV01000134    RPJ78669.1    GGMS01017365    MBY86568.1    AY060438    AAL25477.1    NWSH01007753    PCG62823.1    GFTR01008246    JAW08180.1    GECL01003538    JAP02586.1    GGFL01004957    MBW69135.1    GBGD01000415    JAC88474.1    GFXV01002840    MBW14645.1    GGFL01005012    MBW69190.1    GFTR01008260    JAW08166.1    KU543673    AMS38352.1    GGFJ01001822    MBW50963.1    KU543685    AMS38375.1    GGMR01006408    MBY19027.1    GGMR01012305    MBY24924.1    GFTR01008269    JAW08157.1    GGMR01012443    MBY25062.1    GBGD01000389    JAC88500.1    GGFJ01001844    MBW50985.1    GGFJ01001842    MBW50983.1    GGFJ01001843    MBW50984.1   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
1189
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.14432
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00050
outside
1  -  1189
 
 

Population Genetic Test Statistics

Pi
270.390148
Theta
170.680322
Tajima's D
0.245037
CLR
0
CSRT
0.43752812359382
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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