Gene

KWMTBOMO15509

Annotation

PREDICTED:_mucin-2-like_[Amyelois_transitella]

Location

Bomo_Chr26(+):1023846-1027370      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from transposon TNT 1-94      

Location in the cell

Nuclear   Reliability : 3.895

CDS

ATGGCTACCAACTACCTTATCAATGTACCGAAACTAAAAGGACGCGATAATTATTCAGAGTGGTGTTTCGCTGCAGAAAATTTTTTAGTACTCGAAGGCATGAAGCATTGCATCAAGCCAGAACCGGGGAAAGAAATAGCAAGCGCGGATGACGAAAAAACTAAAGCCAAATTGATCATGACCATCGACCCGTCGTTGTACGTACATGTCAAAACCGTTAAATCGTCGAAAGAATTGTGGGATAAACTAAGGCAATTATTCGATGATAGTGGCTTTTCACGAAGAATTAGTCTATTGAGAAATTTAATTTCAATCCGGCGAGATAATTGCAGTTCGATGACGTCATACGTGACGCAGATAATCGATACAGCGCAGAAATTAAGTGGAACGGGATTTGAAATAAACGAGGAATGGGTGGGATCATTGCTGTTGGCGGGGCTGCCAGAAAAGTTTGCCCCAATGATCATGGCAATTGAACATTCCGGGATTGCCATAAACTCTGATGTAATTAAAACAAAATTACTTGATATGAGTTCCGAGGTCGGTGACCATGATCCGGAAGTTGCACTATGGTCGAAACCAAAAACGAGGGTAGATCAAAATTTCAATACAAAAGGCGAGAAACGAACATCAAATTATACGTCCAATGTAAAAAAAAAGGTTATAAAATGTTATAAATGTAAGCAAAGTGGTCATTATAAAAATCAGTGTCCGAGTTTAGAAGCCGAAAAAAGAAAACAATCCAACGCCTTTAGTGCTATTTTCTTAAGTGGAAATTTCAACTGCGATAGTTGGTACATAGATAGCGGGGCCAGCAAACACATGACAGCAAAGAAAGAATACGTTGAGAGTCCATCATTTGAACATGAAATTAAAGAAATAATTGTTGCGAACAAAACATCCGTCCCGGTAGTGTGTTCTGGTGATGTAAACATAATCACAGTTGTGAATGGTGTAGAATATGACATCACAGTTTCAAATGTATTGTGCATACCGAGTTTAACAACAAACTTGCTTTCAGTGAGTCAGTTAATTGAGAATGGCAATAAGGTAATCTTTAAAGAGAAATTTTGCTATATTTACAATCAACAGAGAACTCTAGTTGGAAAGGCAGAATTAGTAGATGGTGTGTACAGATTATATACTAAGAAATCAGAACAGTTATTCGCAGCCACAGCTAAGGTGTCGAGTGAAACTTGGCACCGACGATTAGGGCATATCAACAGTACCAGCTTGAACAAAATGAAGAATGGAGCTACGACAGGTATTTCATACACAAATAAAGCTGATGTTGACAAATCTAAGTGTACTGTTTGCTGTAAGGGGAAGCAGTCTAGACTACCTTTTCAGCCTAGTTCAACTAACACCCAAGATATTTTAGAATTAATACACTCAGATGTGTGTGGTCCGATGGAAAATGTGTCCATTGGAGGATCCAGATACTATGTCTTATTTGTGGATGACTACAGCAGAATGGTTTTTGTATACTTCATGAAAACAAAGTCAGAGGTATTTAAGTTTTTCAAAGAATTCCAGTCACTTGTAGAAAAACAGACAGATCGGAAAATTAAAATTCTAAGAACAGACAATGGCGGTGAGTACTGCAGTCAAGACTTTGAAAGATATCTAAAACAACACGGAATAATTCACCAGAAAAGTAATGCTTACACACCACAGCAAAATGGTGTGTGTGAAAGGATGAATAGGTCACTAGTTGAAAAGGCTAGATGTCTAATTTTTGATGCTGGTTTACATAAAAAGTTTTGGGCAGAAGCCATAAATACATCTGTATACTTAAGGAATCGATCAGTTGTTACTGGATTAAACAACATGACTCCATATGAAGCCTGGACAAAGAAAAAACCTGACTTAAGTCATGTACGTATTTTTGGAAGTAAGGTTATGATGCACATACCAAAAGAAAAGCGCTTAAAATGGGATATGAAGGCTAAAGAACTTATTTTGGTAGGCTATGCAGACAATGTAAAAGGCTATAGGGTTTATAACCCAGAAAATAACTCTGTCACAACTAGCAGAGACATTATAATAATGGAGAAAACTGAAAATACAATTGAAATTCCTATTGAGTGCAAGGCTCCAGCGGAGGAACAGAGAGAAGGAGACGAAAGTAGAACTACAGAAAGTACAGACACTGAATGTGATGATAATGATATCACATATATTCCAGAAGCTTCTTCAGGAAGTGACTCATATGACAGTTTTTCTGAAACACCATCAGAACCAGAACCTTCATTATTCTTGAATCAGGATATTCCAAACAAGCGAGTGAGAAAAATACCTGATAGATTTAGCTATAGTCACTTATGTATTGCAGAATCAGATGATCAAAATATAATGGATATTTCACTCAAGGAAGCTTTAAATGGACCTGAAAGTAAATTTTGGAGATCAAGCATGGAGGAGGAATTAGAATCATTTAAGAAAAATGATGCATGGGAACTTGTGGATAAGCCTCGTGACTCTACAGTAGTGCAGTGCAAATGGGTATTTAAAAAGAAGTATGATAGTGTCGGTAATGTGCGTTATCGTGCTAGATTAGTGGCAAAAGGCTTTTCACAGAAAGCTGGCATAGACTATCATGAAACTTTTTCACCTGTGCTACGTTATACTACTTTAAGATTGTTATTTTCTATAGCAGTAAAACTAGGTTTAGATATACGTCATCTTGATGTCACTACAGCCTTTCTAAATGGTTTTTTGAATGAATCTGTGTATATGCAAAAACCTGTCCTTTATAGAGATTGTAATGATAATGATAACAAAGTATTAAAGCTTAAACGTGCCATATATGGACTTAAGCAATCATCTCGTGCTTGGTATCAGAGAGTTAATGATTACTTAGAGTCTTTAGGATATTTAAAATCTAAGTATGAACCGTGTTTGTTTACGAAGTCTGAAGGAAATGCTAAAGTTATAATAGCATTGTTTGTTGATGATTTTTTTGTTTTTTCTAACTGTAAAATGGCAACTAATCAGTTAATACAAGATTTGAGTAGTAAATTTAAAATTAAAGATTTGGGTCAAATAAAGCAATGTTTAGGCTTAAGAGTGAATATGTATAAAAATGCTATAACTGTTGATCAAGAACAGTATATAGAAAGCTTGTTAAAAAAGTTTAACATGTCACATTGTAAAACTATAGAAACTCCTATGGAGATTAACTTAAGATTGGAAAAATCTGAGAATAGTTTATGTAATAAAATATTCCATATAGACAATTAA

Protein

MATNYLINVPKLKGRDNYSEWCFAAENFLVLEGMKHCIKPEPGKEIASADDEKTKAKLIMTIDPSLYVHVKTVKSSKELWDKLRQLFDDSGFSRRISLLRNLISIRRDNCSSMTSYVTQIIDTAQKLSGTGFEINEEWVGSLLLAGLPEKFAPMIMAIEHSGIAINSDVIKTKLLDMSSEVGDHDPEVALWSKPKTRVDQNFNTKGEKRTSNYTSNVKKKVIKCYKCKQSGHYKNQCPSLEAEKRKQSNAFSAIFLSGNFNCDSWYIDSGASKHMTAKKEYVESPSFEHEIKEIIVANKTSVPVVCSGDVNIITVVNGVEYDITVSNVLCIPSLTTNLLSVSQLIENGNKVIFKEKFCYIYNQQRTLVGKAELVDGVYRLYTKKSEQLFAATAKVSSETWHRRLGHINSTSLNKMKNGATTGISYTNKADVDKSKCTVCCKGKQSRLPFQPSSTNTQDILELIHSDVCGPMENVSIGGSRYYVLFVDDYSRMVFVYFMKTKSEVFKFFKEFQSLVEKQTDRKIKILRTDNGGEYCSQDFERYLKQHGIIHQKSNAYTPQQNGVCERMNRSLVEKARCLIFDAGLHKKFWAEAINTSVYLRNRSVVTGLNNMTPYEAWTKKKPDLSHVRIFGSKVMMHIPKEKRLKWDMKAKELILVGYADNVKGYRVYNPENNSVTTSRDIIIMEKTENTIEIPIECKAPAEEQREGDESRTTESTDTECDDNDITYIPEASSGSDSYDSFSETPSEPEPSLFLNQDIPNKRVRKIPDRFSYSHLCIAESDDQNIMDISLKEALNGPESKFWRSSMEEELESFKKNDAWELVDKPRDSTVVQCKWVFKKKYDSVGNVRYRARLVAKGFSQKAGIDYHETFSPVLRYTTLRLLFSIAVKLGLDIRHLDVTTAFLNGFLNESVYMQKPVLYRDCNDNDNKVLKLKRAIYGLKQSSRAWYQRVNDYLESLGYLKSKYEPCLFTKSEGNAKVIIALFVDDFFVFSNCKMATNQLIQDLSSKFKIKDLGQIKQCLGLRVNMYKNAITVDQEQYIESLLKKFNMSHCKTIETPMEINLRLEKSENSLCNKIFHIDN

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Aspartyl protease   Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Protease   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger  

Feature

chain  Retrovirus-related Pol polyprotein from transposon TNT 1-94

Uniprot

A0A1Y1N932   A0A1Y1N668   A0A2A4J959   A0A1Y1N664   A0A194RU38   A0A0N1ICY1   + More
A0A1Y1NAZ7   A0A0V1FKH2   A0A0V1APS7   A0A0V1K1Y9   A0A0A9WRE3   A0A0V1F2E6   A0A2J7RKJ6   A0A2J7Q1Z2   A0A2J7R8S8   A0A2J7R668   A0A085MVP5   A0A0A9WPH5   A0A085N572   A0A1Y1LYU4   A0A0V0YNF4   A0A0J7KDR3   A0A085MSF4   A0A0V1APU2   W8ANX7   W8BYI7   A0A0V0RWJ3   K7J8U2   A0A151T355   A0A0N5DDW3   P10978   A0A085NQR3   A0A151R7U0   A0A085N9K0   A0A2M4CV35   A0A2M3YZL7   A0A2M3YZL3   A0A224X581   A0A131XNF9   A0A0K8U6X2   A0A0K8WJW9   A0A0A1WFC7   A0A3S3NIE3   B8YLY7   A0A151THM1   A0A0V1GTY0   A0A2N9IWX1   A0A0A9XVJ9   A0A0V1MGJ0   A0A0K8U956   A0A085MV21   A0A0K8U8C3   A0A0J7KDV5   A0A2N9FXG4  

Pubmed

28004739    26354079    25401762    24929829    24495485    20075255    + More
22057054    2536143    25830018    19656907   

EMBL

GEZM01011857    JAV93390.1    GEZM01011856    JAV93393.1    NWSH01002292    PCG68657.1    + More
PCG68658.1    GEZM01011859    JAV93384.1    KQ459875    KPJ19636.1    KQ460882    KPJ11482.1    GEZM01011855    JAV93396.1    JYDT01000069    KRY86576.1    JYDH01000330    KRY26802.1    JYDS01000009    JYDV01000021    KRZ33483.1    KRZ41218.1    GBHO01033235    JAG10369.1    JYDR01000001    KRY80095.1    NEVH01002725    PNF41351.1    NEVH01019375    PNF22597.1    NEVH01006721    PNF37230.1    NEVH01006980    PNF36330.1    KL367628    KFD61291.1    GBHO01033237    JAG10367.1    KL367553    KFD64618.1    GEZM01045163    GEZM01045162    JAV77888.1    JYDU01000001    KRY01876.1    LBMM01008999    LBMM01007721    KMQ88472.1    KMQ89488.1    KL367691    KFD60150.1    KRY26801.1    GAMC01020352    JAB86203.1    GAMC01008189    JAB98366.1    JYDL01000068    KRX18751.1    AAZX01000499    CM003610    KYP61490.1    X13777    KL367480    KFD71809.1    KQ483989    KYP38573.1    KL367527    KFD66146.1    GGFL01004951    MBW69129.1    GGFM01000952    MBW21703.1    GGFM01000953    MBW21704.1    GFTR01008771    JAW07655.1    GEFH01000951    JAP67630.1    GDHF01029905    JAI22409.1    GDHF01000873    JAI51441.1    GBXI01017107    JAC97184.1    NCKU01012701    RWS00004.1    FJ544857    ACL97387.1    CM003608    KYP66486.1    JYDP01000258    KRZ01816.1    OIVN01006239    SPD28653.1    GBHO01020706    JAG22898.1    JYDO01000104    KRZ71003.1    GDHF01029191    JAI23123.1    KL367637    KFD61067.1    GDHF01029405    JAI22909.1    LBMM01008805    KMQ88628.1    OIVN01001269    SPC91982.1   

Proteomes

UP000218220    UP000053240    UP000054995    UP000054776    UP000054805    UP000054826    + More
UP000054632    UP000235965    UP000054815    UP000036403    UP000054630    UP000002358    UP000075243    UP000046395    UP000084051    UP000285301    UP000055024    UP000054843   

Pfam

PF13976   gag_pre-integrs        + More
PF07727   RVT_2
PF00665   rve
PF13961   DUF4219
PF00098   zf-CCHC
PF14244   Retrotran_gag_3
PF04500   FLYWCH
PF05380   Peptidase_A17
PF00078   RVT_1
PF05585   DUF1758

Interpro

IPR036397   RNaseH_sf        + More
IPR025724   GAG-pre-integrase_dom       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR013103   RVT_2       
IPR001878   Znf_CCHC       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR025314   DUF4219       
IPR029472   Copia-like_N       
IPR007588   Znf_FLYWCH       
IPR008042   Retrotrans_Pao       
IPR000477   RT_dom       
IPR008737   Peptidase_asp_put       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A1Y1N932   A0A1Y1N668   A0A2A4J959   A0A1Y1N664   A0A194RU38   A0A0N1ICY1   + More
A0A1Y1NAZ7   A0A0V1FKH2   A0A0V1APS7   A0A0V1K1Y9   A0A0A9WRE3   A0A0V1F2E6   A0A2J7RKJ6   A0A2J7Q1Z2   A0A2J7R8S8   A0A2J7R668   A0A085MVP5   A0A0A9WPH5   A0A085N572   A0A1Y1LYU4   A0A0V0YNF4   A0A0J7KDR3   A0A085MSF4   A0A0V1APU2   W8ANX7   W8BYI7   A0A0V0RWJ3   K7J8U2   A0A151T355   A0A0N5DDW3   P10978   A0A085NQR3   A0A151R7U0   A0A085N9K0   A0A2M4CV35   A0A2M3YZL7   A0A2M3YZL3   A0A224X581   A0A131XNF9   A0A0K8U6X2   A0A0K8WJW9   A0A0A1WFC7   A0A3S3NIE3   B8YLY7   A0A151THM1   A0A0V1GTY0   A0A2N9IWX1   A0A0A9XVJ9   A0A0V1MGJ0   A0A0K8U956   A0A085MV21   A0A0K8U8C3   A0A0J7KDV5   A0A2N9FXG4  

PDB

4NYF     E-value=0.031873,     Score=91

KEGG

NA   

GO

GO:0015074   GO:0000943   GO:0003676   GO:0008270   GO:0003964   GO:0004190   GO:0004519   GO:0051536   GO:0051537   GO:0043565   GO:0003677   GO:0003707   GO:0006281   GO:0006259  

PANTHER

PTHR11439  

Length:

1080

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01138

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.00017

outside

1  -  1080

 

 

Pi

222.975141

Theta

126.062118

Tajima's D

2.647468

CLR

1.224487

CSRT

0.955602219889006

Interpretation

Possibly Balancing Selection