Silkworm Genome Informatics Database

Gene

KWMTBOMO15504

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr26(+):900656-906100 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.405 Nuclear Reliability : 1.233

CDS

ATGTATTGTTCTCCTAACCCAAAAAAAACTGATGAAAGTGTGGGCGGCAACACGGGCCGCGAAATATCTACGGCACCGTTTAAGGTGCCAACCGTGGCAGCAAAAGCTGTAAGATGCGAGAGCGCACTCTCGATGCGGTCGGGAAGTGCTGCTTCCGTGAGGAGTAGCGCCTCGAGTGACCGAGGGTCGCTCTCGGTAGATGAAATGAATAGTACGATTGTAGGAGGAAGAGCACTCCGCAAACGTAAAACGGCTCCGCGAGCGGCGGCTTCCCGCCCTTCTGACTCCTCGGAGGGGGAACCCGCACCGCCCGCGAAATTCCTCGCCTTAGAGGAAACCACGGCACCAGTCGGTGGTCGCCAGGTGGCAACGGACTCTGCCAGTGCAGAGGTCGAGCGACTCGTCCGCTCCCTCACCGAGGTGGGGTTCGAAGACTCCACAAAACTATTTAGGGTCGCCTCGGATATTGTATCCAGTGTGGCAGCCAAATCGGGCAGGGGTTTTAAGGGCATATACCTGCATGCTCTTAAGTGCTTGGCTGCCACAATTGAAGACTACCTTAACATAGTTACTCACAAGACGAGCGGCGAGAACGAGGAATGCGTGCGACTGCAGAGAGACCAGCTCAAGGCACAAAACGCCGAGCTGCAAAATAATAATCTTGAGCTACGGGCGGAGATCGCGACCCTACACATGCGGGTGGACGAACTCATGGCGGAGATACGTAGCCCGGCTCCACCCGATGTCGAGGAGGTAGCTGAGCTAAAGCGGCGGATCGCCATTTTAGAGGCGCGCAGTTCGCCAGTGGAGCGTGCAAGACCACTGCTCGCACACGAGCGGAGAGCTGGCACCCAGGTCAAGCCCCAGTCTGCCAAACAGAATAAGCAGCCTGCCAAGCACGATCAAACCCAGCCGATCACCCTGGCCAAGCTTCATGTAGCTAAGCAAGCCAAGGCCGAGCAGCCGGTCCCTACCAAGCCACAGCCTGCCGTAGCGCGTACTGGAAGGGACCGAACGAAGAAGAAAGGCGTGAATGCTGCCAAAGTGATGCAGTACCCTCAGCCCTGCCCGCTGCCTCCGGTCCCATCCAGCATGGACGTAGCGTGGACGACAGTGGTAAAGCGGGGACAAAGAAAGACGAAGGAAGGACAAAGAAGCCCTCGGTCTGTCCAGGCAGTTGGCGCTCCCCGCGTAGAGGGTCCAGCGGTGAAGATACGGAAGAACCGTCGAGGAGGAAGATCCGGCAAGACACGCGCTCCGCGGTCGGCTGCAGTTGTTTTAGAATTGCTGCCGGCCGCTAAAGACAAGGGTATCACTTACGAAGAAGTGATGGCCCGGGCGCGTGGTGGCGTGGATATTGACGCCATCGGAGTGGAAGGCGGACTGAAGGTTCGACACACGGCTAACGGCGCTCGTTTGCTCGAATGTCCCGGTGCTGACTCAGGAGCGGTTGCGGACCGACTTATGGCCCGGCTCCGCGAGATCTTGCCTGATCCGGAGGTGGTGAGGATCGACAGGCCTGTCAGAATGGCGGAGATCAAGGTGACGGGCCTGGACGAGTGCGCCACGAAAGAGGAGGTGGCTGCCGCTATCGCATTGCAGGGGAACTGTGCTCTTGCAAACGTCAAGGTGGGGGAGCTTCGGAGTACATATTCCGGAACTCGCTCTGTATGGGCGCGGTGCCCCGTACAGACAGCCACCCTACTGGCTACGCCTGCACAGGGAAAGCCCGCTGACACGCCCGGTAGGCTACGCGTGGGGTGGGTCATTGCCCACGTGCAGTTGCAGGAAGCTCGACCATGGCGATGCCTTCGATGTTTCGGCACCGGGCACGGCCTCGCCAAGTGCTCGTCAGCTGTTGACCGCAGCGGACTATGTTTCCGGTGCGGCCAATCTGGGCACAAGGCCGCTTCCTGCACTGCCGCCATGCCACACTGTGTATTGTGCGACGCGGAGAAGCGGCGGGCCAACCACCGGGCGAATTTGAACCACTCCGCCAGGGCGCAGGATCTCCTCGTCCACACCATGGTGGAGTGGTCAATCGATGTTGCCATAGCCGCGGAGCCGTACTTCGTCCCTGCGGACCAGGATGCCTGGATCGGGGACGTCGACGGCTCCGTGGCTATTACTATCAGGCAGGCCGCGGCGTTACCCCCCCTGGTGATGGTGGCCAGGGGATCCGGTTATGTCGCGGCCAGGGTCGACGAAACCGTCGTGATCGGGGTATACTTCTCTCCGAATAGACATCTCGCCGAGTTCGAGCAGTTCCTGGGCGGGCTTGAGGTGTTGGTTCACCGCCTCGGGTCCCGCCCGGTTATCTTAGCGGGAGACCTCAACGCAAAATGGGTGACTTGGGGTTCCCCCCGCTCGGACTCACGCGGCAGGATGCTCTCGGAGTGGGCGATCGCGGCTGGTCTCTGTCTTTTGAACAGAGGTTCGGTCGCGACTTGCGTGCGATGGAACGGCGAATCTCACGTGGACGTGACATTCGCATCTCCGTCCATCGCACGCCGCACACGTGGCTGGCGCGTTCTTGAGGGGGCGGAGACGCTCTCGGACCATCGATACGTCCGATTTGAGCTCTCAGCCTCCTCTCGATCCGCGTCGGCTATGAACGCCCGCGGTGAGGAGGAGCTCCCGCGAAGTGCTCCTCGGTCATTCCCCAGGTGGGCACTGAAGCGCCTGAATAAGGAGCTCCTGGTGGAGGCAGCCACGGTGGCTGCGTGGGCACCCGTGCCTACTAGCCCCGTGGACGTGGAGTCAGAGGCTGACTGGTTACGGGGAACGATGGGTCGTATTTGTGACTCAGCGATGCCCCGGGTAGGCAGCAGTGCTCCGCGTGGCGGTGCGTACTGGTGGTCGCCCGAAATCGCGCAACTCCGCGAGGAGTGCGTGCGGGCGCGCCGCCGGAGCGCTCGCCATCGCCGCCGCCGCCTTCGCGATGAGGACTTCGCGGAGGTAGCGGACCGGTTGCGCGCCGACTGCCGCCAAAAGCAGGAAGCGTTGCGACTGGCCATCGGTGAGGCCAAATCTCAGGGCATGCAGACTCTCCTGGAGATGCTCGATCAGGATCCCTGGGGGCGCCCGTACCAAACGGTCCGCAAGAAATTGCGGCCGTGGGCGCTCCCAGTGACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGAGATTGTCTCCGGGCTGTTCCCGCAGATGGAGAGGGACTTTGAGCCTCCCTCCATGGGCGCGCCGCCTCGCAGTGACGTGAGCGGTGTTGCTGAGGTGGTCCCTCCGAGCATTTTGGAGGAAGAGATTCATGCGGCCGTGTTGAGGATGCGGAGAAAAGACGCGGCCCCCGGCCCTGACGGTGTTCACGGCCGGGTCTGGGATTTGGCCTTCGGTGCCCTTGGGGACCGGCTCGTGCGGCTCTTTGAAGCCTGCTTCGAGTCGGGACGGTTTCCTAAGCAGTGGAAGACGGGCAGACTCGTCCTTCTGAGGAAGGAGGGGCGTCCCGCAGACTCACCTGCGGGGTACCGCCCCATCGTGTTGCTGGACGAGGCGGGAAAATTGTTGGAGCGAGTTATCGCCGCCCGCATCGTCCGGCACCTGACCGGGACGGGTCCCGATCTGTCGGAGGAACAGTATGGCTTCAGAGAGGGCCGCTCTACTATCGACGCGATTATGCGCGTGCGTGCCCTCTCTGACGAAGCTGTCGCCCGGGGTGGGGTGGCCTTGGCGGTGTCCCTGGATATCGCCAACGCTTTTAACACCTTGCCCTGGTCAGTGATCGCGGGGGCGCTCGAACATCATGGCGTCCCCGCGTACCTCCGCCGACTGATCGGGTCCTATCTCGAGGACAGATCGGTCGTGTGCACCGGACACGGTGGTGCGGTGCTCCGCTTTCCGGTCGAGCGCGGTGTTCCACAGGGGTCGGTCCTTGGCCCTCTCCTGTGGAATATCGGTTACGACTGGGCTCTGAGGAGCGCCCTGCACGGCCCTCTCCCGGGCCTAAGCGTTGTGTGTTACGCGGATGACACGTTGGTCGTGGCCCGGGGGAGGAACTACCAAGAGTCTGCTCGTCTTGCCTGCGCAGGGGTGGCATTCGTCGTCGGTAAGATCCGAAGGCTGGGCCTCGACGTGGCCCTCGAGAAATCCCAGGCCCTGCTGTTTCACAGGGCTGGGAGAGAGCCGCCACCCGGGGCCCACCTGGTGATTGGAGGCGTCCGCGTCGAGGTCGGGGTGACTGGGTTACGGTACCTCGGTCTCGAATTGGACGGTCGTTGGAACTTCCGCGCTCATTTCGAGAAGTTGGCCCCCCGACTGATGGCGACGGCTGGATCGCTGAGTCGGCTCTTGCCAAACGTCGGAGGGCCTGACACGGTGGTGCGCCGCCTCTACGTGGGGGTGGTGCGGTCTATTGCATTATACGGAGCCCCCGTGTGGTGCCGCGCCTTGACTCGCAGAAACGTCGTGGCGCTGCGACGCCCGCAGCGTGCAATCGCAGTCAGGGCGATTCGTGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCGTTCTCGCCGGGACGCCTCCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTATGCGTGGCGTTGTGACCTTCGCGACAGGGGGGAACCACGTCCCGGAGAAGGAGCAATTAGAGCGCGGAGGCTCCAATCTCGGCGGTCTGTGTTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGTCTCCGGACCGTCGAGGCGGTGCGCCCGGTCCTCGCGAAATGGGCGAACCGTGACCAAGGGCGTCTCACCTTCCGGTTGACGCAAATGCTTACCGGCCATGGGTGTTTCGGCCGGTACCTGCATCGCGTTGCCCGGAGGGAACCGACGATGGAGTGTCACCACTGTGACTGCGACGAGGACACGGTCGAGCATACGCTCGCATATTGCCCCGCATGGGTGGAGCAACGCCGTGTCCTTGTCTCGCAAATAGGACCGGACTTGTCGCTGCCGACTGTCGTGGCTACGATGCTCGGCAGCGATGAGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGAACGAGAGAGGGAGAGCTCATCCCTCTCCGCACCTATCCGTCGCCGCCGAGCCGGGGGCCGCAGAAGGGCTTTTGTCCGACTTCGGCCCCTGTAA

Protein

MYCSPNPKKTDESVGGNTGREISTAPFKVPTVAAKAVRCESALSMRSGSAASVRSSASSDRGSLSVDEMNSTIVGGRALRKRKTAPRAAASRPSDSSEGEPAPPAKFLALEETTAPVGGRQVATDSASAEVERLVRSLTEVGFEDSTKLFRVASDIVSSVAAKSGRGFKGIYLHALKCLAATIEDYLNIVTHKTSGENEECVRLQRDQLKAQNAELQNNNLELRAEIATLHMRVDELMAEIRSPAPPDVEEVAELKRRIAILEARSSPVERARPLLAHERRAGTQVKPQSAKQNKQPAKHDQTQPITLAKLHVAKQAKAEQPVPTKPQPAVARTGRDRTKKKGVNAAKVMQYPQPCPLPPVPSSMDVAWTTVVKRGQRKTKEGQRSPRSVQAVGAPRVEGPAVKIRKNRRGGRSGKTRAPRSAAVVLELLPAAKDKGITYEEVMARARGGVDIDAIGVEGGLKVRHTANGARLLECPGADSGAVADRLMARLREILPDPEVVRIDRPVRMAEIKVTGLDECATKEEVAAAIALQGNCALANVKVGELRSTYSGTRSVWARCPVQTATLLATPAQGKPADTPGRLRVGWVIAHVQLQEARPWRCLRCFGTGHGLAKCSSAVDRSGLCFRCGQSGHKAASCTAAMPHCVLCDAEKRRANHRANLNHSARAQDLLVHTMVEWSIDVAIAAEPYFVPADQDAWIGDVDGSVAITIRQAAALPPLVMVARGSGYVAARVDETVVIGVYFSPNRHLAEFEQFLGGLEVLVHRLGSRPVILAGDLNAKWVTWGSPRSDSRGRMLSEWAIAAGLCLLNRGSVATCVRWNGESHVDVTFASPSIARRTRGWRVLEGAETLSDHRYVRFELSASSRSASAMNARGEEELPRSAPRSFPRWALKRLNKELLVEAATVAAWAPVPTSPVDVESEADWLRGTMGRICDSAMPRVGSSAPRGGAYWWSPEIAQLREECVRARRRSARHRRRRLRDEDFAEVADRLRADCRQKQEALRLAIGEAKSQGMQTLLEMLDQDPWGRPYQTVRKKLRPWALPVTERLQPQQLREIVSGLFPQMERDFEPPSMGAPPRSDVSGVAEVVPPSILEEEIHAAVLRMRRKDAAPGPDGVHGRVWDLAFGALGDRLVRLFEACFESGRFPKQWKTGRLVLLRKEGRPADSPAGYRPIVLLDEAGKLLERVIAARIVRHLTGTGPDLSEEQYGFREGRSTIDAIMRVRALSDEAVARGGVALAVSLDIANAFNTLPWSVIAGALEHHGVPAYLRRLIGSYLEDRSVVCTGHGGAVLRFPVERGVPQGSVLGPLLWNIGYDWALRSALHGPLPGLSVVCYADDTLVVARGRNYQESARLACAGVAFVVGKIRRLGLDVALEKSQALLFHRAGREPPPGAHLVIGGVRVEVGVTGLRYLGLELDGRWNFRAHFEKLAPRLMATAGSLSRLLPNVGGPDTVVRRLYVGVVRSIALYGAPVWCRALTRRNVVALRRPQRAIAVRAIRGYRTVSFEAACVLAGTPPWDLEAEALAADYAWRCDLRDRGEPRPGEGAIRARRLQSRRSVLEAWSRRLADPSAGLRTVEAVRPVLAKWANRDQGRLTFRLTQMLTGHGCFGRYLHRVARREPTMECHHCDCDEDTVEHTLAYCPAWVEQRRVLVSQIGPDLSLPTVVATMLGSDESWKAMLDFCECTISQKEAAERERESSSLSAPIRRRRAGGRRRAFVRLRPL

Uniprot

A0A0J7KQK3 A0A0J7KRB8 A0A0J7NFZ0 A0A0J7KFH2 A0A3S2LNH8 A0A0J7N0R3 + More
A0A0J7KIS5 J9KT61 X1WJY4 X1WZ64 J9LA43 J9KM84 J9KNS1 A0A139WAH4 J9JY94 A0A139WN93 A0A139WNC9

Pubmed

18362917 19820115

EMBL

LBMM01004272 KMQ92618.1 LBMM01003988 KMQ92922.1 LBMM01005474 KMQ91485.1 + More
LBMM01008278 KMQ89009.1 RSAL01003504 RVE40273.1 LBMM01012412 KMQ86235.1 LBMM01006977 KMQ90149.1 ABLF02009073 ABLF02030702 ABLF02042963 ABLF02011238 ABLF02011183 ABLF02041884 ABLF02018098 ABLF02018942 ABLF02041885 ABLF02018808 KQ971388 KYB24913.1 ABLF02007989 KQ971310 KYB29499.1 KYB29500.1

Proteomes

UP000036403 UP000283053 UP000007819 UP000007266

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01421   Reprolysin
PF00098   zf-CCHC

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom
IPR024079   MetalloPept_cat_dom_sf
IPR001590   Peptidase_M12B

SUPFAM

SSF56219 SSF56219 + More
SSF57756 SSF57756

Gene 3D

3.60.10.10 3.40.390.10

ProteinModelPortal

A0A0J7KQK3 A0A0J7KRB8 A0A0J7NFZ0 A0A0J7KFH2 A0A3S2LNH8 A0A0J7N0R3 + More
A0A0J7KIS5 J9KT61 X1WJY4 X1WZ64 J9LA43 J9KM84 J9KNS1 A0A139WAH4 J9JY94 A0A139WN93 A0A139WNC9

PDB

1WDU E-value=2.91212e-09, Score=154

KEGG

101743524 no KO assigned | (RefSeq) uncharacterized LOC101743524

GO

GO:0008270 GO:0003676 GO:0003964 GO:0016021 GO:0050567 GO:0051536 GO:0051537 GO:0043565 GO:0003677 GO:0003707 GO:0006281 GO:0006259

Length:

1723

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04594

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00006

outside

1 - 1723

Pi

10.000926

Theta

10.960838

Tajima's D

0

CLR

106.860636

CSRT

0.382430878456077

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree