Gene

KWMTBOMO15498

Pre Gene Modal

BGIBMGA010789

Annotation

mitochondrial_28S_ribosomal_protein_S18c_[Bombyx_mori]

Location

Bomo_Chr26(+):853706-854459      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 3.645

CDS

ATGGCATTGTTTAAATCATTTTTTGCCCGGCAAATGTTAAGCACTCATCAGGCAGTACTCTCCACAATCAGGACACAATCCACCAACCTCAAACCAGACCCAGATGCCCCAGTTGAAATGGAAAATCCATTCAAAAAAGAACTGAAACAATGTATACTCTGTAAACTTAATATAGATCCCGATTACAAGAATTACAGATTATTATCGCAATTTCAATCTCCGTACACGGGCAGAATCTACCCGAGGCATATAACTGGTCTATGTAAAAGAAAACAGATGCAAGTGGAGCAGGAAATAACCAAGGCTCAGGATTTAGCCTATATGCCGTACACTTACAAACATAAAATATTTTTGAAAGATCCAAAATTGTTTGACCCTGAAAACCCAGTGCGTTCTCATAGATTTTAA

Protein

MALFKSFFARQMLSTHQAVLSTIRTQSTNLKPDPDAPVEMENPFKKELKQCILCKLNIDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMPYTYKHKIFLKDPKLFDPENPVRSHRF

Uniprot

H9JMN6   A4GUC7   A0A212EV45   A0A0L7LNG1   A0A2W1BT35   A0A2A4JTM8   + More
A0A194PRA5   A0A2H1VH95   A0A0N0PBF7   A0A023EE08   A0A182GBM9   A0A336MEU7   A0A1S4EZ99   A0A1L8E0X6   Q17KP8   A0A336JX29   A0A1L8E121   A0A1W4XDL2   A0A0L0BQE0   A0A1I8N4N3   A0A1B0GK44   A0A1I8NQI3   A0A1B0GK45   A0A0P4VGR0   A0A0K8WH80   A0A0V0G8Z0   A0A1B6BZB8   A0A034WAP2   A0A182QFT5   A0A224XXT6   A0A182JHF9   B0W7S8   A0A2M4AUF7   B4NGV2   A0A1A9ZZL7   A0A158NJF2   A0A232EK92   W5JB77   A0A0A1WGN9   A0A0A9WTH3   B4HZQ4   A0A182FIH0   B4R1L6   B3P593   Q9VA81   A0A1A9XTB8   A0A182SS02   A0A2M4C2I6   A0A2M3ZBK9   T1HA68   A0A1A9VVI8   B4PLW0   A0A1B0FNX5   A0A084WSP5   K7J9E6   A0A1W4VQZ4   A0A1B0BUQ8   A0A0M4F6G1   A0A151X4P0   A0A195CCV9   B3LZF0   A0A182MQG5   R4WKN3   A0A1J1J4I6   A0A1A9WPQ5   B4LYL4   A0A1J1J887   A0A0T6ATY6   A0A182YH18   A0A1W4W324   A0A0L7QQT4   B4JVB2   A0A1Y1MUF2   Q29C34   B4GNN1   A0A182JUD6   A0A3B0JCI8   D6X0H2   E2B6X5   A0A182IB59   B4K8Q7   A0A1S4GZ73   Q7Q866   A0A182X501   A0A154P3M4   A0A182KWM6   A0A182UXM2   A0A182U243   A0A2P8Y6N1   A0A2A3EF55   V9IEY9   A0A182PUH5   A0A0M9A9G2   A0A2J7PBC4   A0A088ASJ0   A0A1B6IQ51   A0A1B6GE11   A0A067QJC7   A0A1B6M2D4   A0A1B6KTP7  

Pubmed

19121390    22118469    26227816    28756777    26354079    24945155    + More
26483478    17510324    26108605    25315136    27129103    25348373    17994087    21347285    28648823    20920257    23761445    25830018    25401762    26823975    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    24438588    20075255    23691247    25244985    28004739    15632085    18362917    19820115    20798317    12364791    20966253    29403074    24845553   

EMBL

BABH01016560    EF432759    ABO31093.1    AGBW02012241    OWR45370.1    JTDY01000481    + More
KOB76987.1    KZ149908    PZC78232.1    NWSH01000657    PCG74974.1    KQ459601    KPI93660.1    ODYU01002556    SOQ40219.1    KQ461003    KPJ10016.1    GAPW01005755    JAC07843.1    JXUM01053047    KQ561760    KXJ77613.1    UFQT01001062    SSX28696.1    GFDF01001704    JAV12380.1    CH477222    EAT47256.1    UFQS01000002    UFQT01000002    SSW96697.1    SSX17084.1    GFDF01001705    JAV12379.1    JRES01001520    KNC22272.1    AJWK01022555    AJWK01022556    GDKW01003989    JAI52606.1    GDHF01019704    GDHF01001867    JAI32610.1    JAI50447.1    GECL01001622    JAP04502.1    GEDC01030690    JAS06608.1    GAKP01007203    JAC51749.1    AXCN02001406    GFTR01001638    JAW14788.1    DS231855    EDS38222.1    GGFK01011083    MBW44404.1    CH964272    EDW84449.1    ADTU01017671    ADTU01017672    ADTU01017673    NNAY01003850    OXU18765.1    ADMH02001734    ETN61251.1    GBXI01016240    JAC98051.1    GBHO01033806    GBRD01013337    GDHC01018142    JAG09798.1    JAG52489.1    JAQ00487.1    CH480819    EDW53511.1    CM000364    EDX15004.1    CH954182    EDV53076.1    AE014297    BT023241    BT029424    KX531856    AAF57041.2    AAY55657.1    ABK57081.1    ANY27666.1    GGFJ01010389    MBW59530.1    GGFM01005158    MBW25909.1    ACPB03021980    CM000160    EDW99097.1    CCAG010001003    ATLV01026657    KE525416    KFB53239.1    JXJN01020869    CP012526    ALC47637.1    KQ982543    KYQ55386.1    KQ977935    KYM98555.1    CH902617    EDV44129.1    AXCM01002370    AK418170    BAN21385.1    CVRI01000070    CRL07303.1    CH940650    EDW68034.1    CVRI01000075    CRL08653.1    LJIG01022857    KRT78363.1    KQ414785    KOC60987.1    CH916374    EDV91432.1    GEZM01020335    JAV89294.1    CM000070    EAL26812.3    CH479186    EDW39357.1    OUUW01000005    SPP80084.1    KQ971372    EFA10545.1    GL446060    EFN88550.1    APCN01000642    CH933806    EDW15476.1    AAAB01008944    EAA10088.3    KQ434803    KZC05944.1    PYGN01000865    PSN39906.1    KZ288271    PBC29786.1    JR042879    AEY59678.1    KQ435710    KOX79930.1    NEVH01027114    PNF13645.1    GECU01018644    JAS89062.1    GECZ01018539    GECZ01009236    JAS51230.1    JAS60533.1    KK853292    KDR08855.1    GEBQ01009892    JAT30085.1    GEBQ01025170    JAT14807.1   

Proteomes

UP000005204    UP000007151    UP000037510    UP000218220    UP000053268    UP000053240    + More
UP000069940    UP000249989    UP000008820    UP000192223    UP000037069    UP000095301    UP000092461    UP000095300    UP000075886    UP000075880    UP000002320    UP000007798    UP000092445    UP000005205    UP000215335    UP000000673    UP000001292    UP000069272    UP000000304    UP000008711    UP000000803    UP000092443    UP000075901    UP000015103    UP000078200    UP000002282    UP000092444    UP000030765    UP000002358    UP000192221    UP000092460    UP000092553    UP000075809    UP000078542    UP000007801    UP000075883    UP000183832    UP000091820    UP000008792    UP000076408    UP000053825    UP000001070    UP000001819    UP000008744    UP000075881    UP000268350    UP000007266    UP000008237    UP000075840    UP000009192    UP000007062    UP000076407    UP000076502    UP000075882    UP000075903    UP000075902    UP000245037    UP000242457    UP000075885    UP000053105    UP000235965    UP000005203    UP000027135   

PRIDE

H9JMN6    A4GUC7    Q9VA81   

Pfam

PF01084   Ribosomal_S18        + More
PF04564   U-box

Interpro

IPR036870   Ribosomal_S18_sf        + More
IPR001648   Ribosomal_S18       
IPR039847   Ubox5       
IPR039925   RNF37_RING-Ubox       
IPR003613   Ubox_domain       
IPR013083   Znf_RING/FYVE/PHD       
IPR018275   Ribosomal_S18_CS       

SUPFAM

SSF46911   SSF46911       

Gene 3D

4.10.640.10     3.30.40.10    

CDD

cd16660  RING-Ubox_RNF37

ProteinModelPortal

H9JMN6   A4GUC7   A0A212EV45   A0A0L7LNG1   A0A2W1BT35   A0A2A4JTM8   + More
A0A194PRA5   A0A2H1VH95   A0A0N0PBF7   A0A023EE08   A0A182GBM9   A0A336MEU7   A0A1S4EZ99   A0A1L8E0X6   Q17KP8   A0A336JX29   A0A1L8E121   A0A1W4XDL2   A0A0L0BQE0   A0A1I8N4N3   A0A1B0GK44   A0A1I8NQI3   A0A1B0GK45   A0A0P4VGR0   A0A0K8WH80   A0A0V0G8Z0   A0A1B6BZB8   A0A034WAP2   A0A182QFT5   A0A224XXT6   A0A182JHF9   B0W7S8   A0A2M4AUF7   B4NGV2   A0A1A9ZZL7   A0A158NJF2   A0A232EK92   W5JB77   A0A0A1WGN9   A0A0A9WTH3   B4HZQ4   A0A182FIH0   B4R1L6   B3P593   Q9VA81   A0A1A9XTB8   A0A182SS02   A0A2M4C2I6   A0A2M3ZBK9   T1HA68   A0A1A9VVI8   B4PLW0   A0A1B0FNX5   A0A084WSP5   K7J9E6   A0A1W4VQZ4   A0A1B0BUQ8   A0A0M4F6G1   A0A151X4P0   A0A195CCV9   B3LZF0   A0A182MQG5   R4WKN3   A0A1J1J4I6   A0A1A9WPQ5   B4LYL4   A0A1J1J887   A0A0T6ATY6   A0A182YH18   A0A1W4W324   A0A0L7QQT4   B4JVB2   A0A1Y1MUF2   Q29C34   B4GNN1   A0A182JUD6   A0A3B0JCI8   D6X0H2   E2B6X5   A0A182IB59   B4K8Q7   A0A1S4GZ73   Q7Q866   A0A182X501   A0A154P3M4   A0A182KWM6   A0A182UXM2   A0A182U243   A0A2P8Y6N1   A0A2A3EF55   V9IEY9   A0A182PUH5   A0A0M9A9G2   A0A2J7PBC4   A0A088ASJ0   A0A1B6IQ51   A0A1B6GE11   A0A067QJC7   A0A1B6M2D4   A0A1B6KTP7  

PDB

6NU3     E-value=7.53884e-25,     Score=275

KEGG

100101195    K02963 small subunit ribosomal protein S18 | (RefSeq) mRpS18C; mitochondrial 28S ribosomal protein S

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0005840   GO:0003735   GO:0004842   GO:0005763   GO:0032543   GO:0070181   GO:0005622   GO:0005634   GO:0043565   GO:0003677   GO:0003707   GO:0006281   GO:0006259  

PANTHER

PTHR13492  

Length:

135

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00017

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.07225

outside

1  -  135

 

 

Pi

189.86487

Theta

178.491694

Tajima's D

0.200469

CLR

0.271643

CSRT

0.429928503574821

Interpretation

Uncertain