Silkworm Genome Informatics Database

Gene

KWMTBOMO15496 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010788

Annotation

PREDICTED:_nucleolar_protein_12-like_[Papilio_xuthus]

Location

Bomo_Chr26(+):723436-728966 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.798

CDS

ATGGATTACATTGTAGGAAGCGTTGCTGCTTTGGTTTCAGGCAACGTAACACCGAACCGTCCTAGATTACTCAAACGACCCCTAACGCCGACCAAGCACCAACCCTCCCCAAATGTCACTCCCAAAAGTGAATTCGTCGAAGATCGCTCTATATTTCTGTCGCCAACATTACAAAAGAAGAAGGCTATGGTAAAGAAGTCACCGAAAAGAATATTTGAGAATCCTGATTTGGAGTTGACGGAAAATAGTGATACCACCACACCCAGTCCTAAAGCAGAAAAAGTAAAGAAACACTTAAAAAACGAGTTAGACAGTAATAGTCCCGTTAAATCTAAAAGCAGGAATAGCAGTTTATCCGAATGCTCATCAAAACTCGAAAAGGCTAGTGAAACAAACGAATGTCAGAATTCAGATGAGAATATCGTAAAGAAAAAAAAGAAAAAACAGAAATCCAAATCGGACAATACAATTAATAAATTTAAAATTGACAGTCAATTAGAAATGATCCCAGCACAATCAGATGCTATTCATTCTCCATCAAAATGCAAACGGCGACGTAAATCAATAAGCCAGTCAAATGAAAGAGATGCTACTGATAATCCAGTAGAGGAATGTTCCAATATTAATTCAAAACAAATTGCACTACAAAATGAGGAGTCAGACAATAACATAACATCTGAAAGCCAAGTTGTAAAAACAAAAGCCAAAAAACGTAAGAAAAACTCTCAAACAAACTTGCAAAAAGTGAATGAGAACAAAGAAAATGATAAACAAGATTCAAACACAATGAAGAATAAAAATAAAAAAATTAATAAAAAGAAACAAATTAAATCTACAGACACTGAATACAGAAATTCGGATAATGTGTCAAAAGCTAAGAAAAAAGAAATCATAAATTTGAATGCAATAACAACAAAAGATTCGGACTCTGAACATGATTCCGATGACGATATCAAGTGTCAAAATGAAGAAATCAATAAAAAAATTCTTAACACGGAGCCCGAAGAATCTTCGTCTGAAGAAGAAGAAGTGCCACAAACAAAACAACCAAAAAAAGAGGTACCCGCAACTGTTTCTAGTGCAGAAGAAATTAGGAGAACTCTTTTCGTTGGTAATATACCATACAGTAAAAAATGTAAGAAGGACATTAAAAAAATTTTTGGTAAATATGGACAGATTGAAACTATAAGGATCCGTACAGTTCCAGTGAAAGATGCTCGGTACTCACCCAAAATGGCACTAATCAAAAATGAACTGCATCCTGACAGAACCACTGTTAATGCTTATGTCAAGTTTAAGGATCAGAATTCTGTTAATGAGGCACTAGCAGAAAACAATACAGTGTTAAATGAAAACCATTTACGTGTCTCCAGAAGCGATACAACAGGGGCTGAGCATGACCCAAAACTGTCAGTCTTTGTTGGAAATCTGCCTTTCACTATTGAAGATGAAGTCTTGAGGTCGAAATTTGAGAACTGCGGTGAAATAGATTCGGTTAGAATCATTAGGGACAAGAAGACAAATGCTGGAAAAGGGTTCGGTTACATAAACTTCAAATCTAAAGACGGAGTGGAATTGGCATTAAACATGTCTGAAGAGGATTTGACCATCAAAAACAGAATATTACGTGTCAAGAGATGCACACAACAAGCTCAGACAGGCAACAAAGTTAATCGCAACAAACCATCGAAGTTCTACAATCAACAGCAAACTGGGGATGGTGCGAAAGGCTTTGGTAATCGTCAAATGGGCAACAGACAGGGTGGGGGGCAAAACGGCAGGCAAGATGTGAGGCAACAAGGACATTTTGGTTTTGGAAATAGGCAAACGGGCAACAGACCAGATCGGGGACAGCAAGGCAGGCCAGACTTTAGGCAACAAGGACAGCTTAGTGGTAATCAACAGGACGGTGCTTATAGAAGAGTTATGAATAAGAGGAAGAATCAGGAATCGAACGACGGTCCGCCTAATAAAAGACAGAACTTCAATCAACCAAAAGAAAAAATCCGGAAAGAGTTTGTAGGAGTCACCGCTGAGAAGAAAAAGAAACGCAAATTTGATAAAGGGCAGAAGAAAAAGAGAGCGCTCAGTGAGATACTGACGAAGTAA

Protein

MDYIVGSVAALVSGNVTPNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRSIFLSPTLQKKKAMVKKSPKRIFENPDLELTENSDTTTPSPKAEKVKKHLKNELDSNSPVKSKSRNSSLSECSSKLEKASETNECQNSDENIVKKKKKKQKSKSDNTINKFKIDSQLEMIPAQSDAIHSPSKCKRRRKSISQSNERDATDNPVEECSNINSKQIALQNEESDNNITSESQVVKTKAKKRKKNSQTNLQKVNENKENDKQDSNTMKNKNKKINKKKQIKSTDTEYRNSDNVSKAKKKEIINLNAITTKDSDSEHDSDDDIKCQNEEINKKILNTEPEESSSEEEEVPQTKQPKKEVPATVSSAEEIRRTLFVGNIPYSKKCKKDIKKIFGKYGQIETIRIRTVPVKDARYSPKMALIKNELHPDRTTVNAYVKFKDQNSVNEALAENNTVLNENHLRVSRSDTTGAEHDPKLSVFVGNLPFTIEDEVLRSKFENCGEIDSVRIIRDKKTNAGKGFGYINFKSKDGVELALNMSEEDLTIKNRILRVKRCTQQAQTGNKVNRNKPSKFYNQQQTGDGAKGFGNRQMGNRQGGGQNGRQDVRQQGHFGFGNRQTGNRPDRGQQGRPDFRQQGQLSGNQQDGAYRRVMNKRKNQESNDGPPNKRQNFNQPKEKIRKEFVGVTAEKKKKRKFDKGQKKKRALSEILTK

Uniprot

H9JMN5

Pubmed

19121390

EMBL

BABH01016551 BABH01016552

Proteomes

UP000005204

PRIDE

H9JMN5

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR034220   RBM34_RRM1
IPR000504   RRM_dom
IPR035979   RBD_domain_sf

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

CDD

cd12394 RRM1_RBM34

ProteinModelPortal

H9JMN5

PDB

2DNZ E-value=8.13862e-06, Score=121

KEGG

101745546 K14837 nucleolar protein 12 | (RefSeq) nucleolar protein 12

GO

GO:0003723 GO:0003676 GO:0000166 GO:0043401 GO:0003700 GO:0005634 GO:0043565 GO:0003677 GO:0003707 GO:0006281 GO:0006259

Length:

702

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00688

Exp number, first 60 AAs:

0.00688

Total prob of N-in:

0.00056

outside

1 - 702

Pi

183.699786

Theta

139.391294

Tajima's D

0.780804

CLR

0.337515

CSRT

0.6021198940053

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics