Gene

KWMTBOMO15494

Annotation

S33901_reverse_transcriptase_-_silkworm_transposon_Pao

Location

Bomo_Chr26(+):684716-686176      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.227

CDS

ATGGATGCGCTATGCATCACACCAAGAAAACCAAAAACAGACCCAGAGGAACAGGCGCTTCGCATCCTCAACAGCAATACAGTCCACACAACAGATGGAAGATACGAAACTGCTCTGCTCTGGAAAACAGATAATGTCAGTCTACCAGACAACTACAATAACTCGTTAAAGCGACTGATAAATATAGAAAACAAACTCGATCGTAATCCGGAACTGAAACAGATATACACAGAACAGATGGAATCACTCGTCACGAAAGGCTACGCCGAGCTCGCTCCAAAAACAAAAACAGAGAACAGAACGTGGTATCTACCTCACTTCGCCGTCGTGAACCCCCTGAATCCGGAAAAACTCCGAGTCGTCCACGACGCCGCCGCCAAAACAAGAGGGGTAGCTTTAAATGATATGCTGCTTAAGGGACCGGACCTACTCCAATCACTACCAGGAGTGATAATGCGATTTAGACAGCATAATATAGCAGTAACAGCAAACATCAAGGAGATGTTCATGCAAGTGAAATTGAGACACGAAGACAGAGACGCGCTCCGATATCCCTGGCGCAAAGATCGCCGAGATGACAAGCCCCCAGAAGAATACAGAATGACCTCGTTGATCTTCGGTGCGTCAAGTTCTCCTTCCACAGCAATATATGTAAAGAACTTGAACACCCAGAAACAAGAAGCCACGCACCCGGAGGCGGCAGTCGCAGTACAGAACAGACACTACGTAGACGACTTCTACTTGGATAACTTCAAAACTTTAAAAGATGCAGTGCACATAACTACAGAGTTTCATCGAAAACACGAAAGAAAGCCGACCTCGAAGACCTTCTGGACCGACAGTAAGATAGTGTTGAGATGGACAAGAACGGGATCACGCTCGAACAAACCATACGTCGCCCAACGCCTGACAGCTATAGAAGACAGTGCAACAGTAAACGGGAGGCGATGGTTACCCACGAAGCATAACTTAGCCGACGACGTGACCCGAGACGTCCCAATGCCGTACCGCAACGAACATAGGTGGTTCAGAGGGCCAGAATTCCTACGCCAACGAGAGGACCCCTGGCCGACGGAATCGGCGTCAGAAACTACAGAACCGATGGGTGAAGTAAATATAGCAGCTGCAGCACCGGCGGGAGCTTCATGGCCGAAGCGTCCCGACAACGTGGGGCGCATCGTAGACTTCAGAACCAAGGGTGGAGTTCTACGAAGACCAGTACGAAAACTACTGATCCTGCCCATCGAAGAAGACCATCCTGCACCGAAAAGAATGCGACTGACTCGCACGGCGGGAGTAATGTGCAGGACGAAATAG

Protein

MDALCITPRKPKTDPEEQALRILNSNTVHTTDGRYETALLWKTDNVSLPDNYNNSLKRLINIENKLDRNPELKQIYTEQMESLVTKGYAELAPKTKTENRTWYLPHFAVVNPLNPEKLRVVHDAAAKTRGVALNDMLLKGPDLLQSLPGVIMRFRQHNIAVTANIKEMFMQVKLRHEDRDALRYPWRKDRRDDKPPEEYRMTSLIFGASSSPSTAIYVKNLNTQKQEATHPEAAVAVQNRHYVDDFYLDNFKTLKDAVHITTEFHRKHERKPTSKTFWTDSKIVLRWTRTGSRSNKPYVAQRLTAIEDSATVNGRRWLPTKHNLADDVTRDVPMPYRNEHRWFRGPEFLRQREDPWPTESASETTEPMGEVNIAAAAPAGASWPKRPDNVGRIVDFRTKGGVLRRPVRKLLILPIEEDHPAPKRMRLTRTAGVMCRTK

Uniprot

V9GZQ1   A0A2M4A5G3   A0A2M4A5D7   A0A2M4A5H2   A0A2M4A568   A0A2M4A5C7   + More
K7JN15   A0A182G158   A0A1W7R681   A0A0N1IGH3   A0A2M3ZH18   A0A2M4CVY8   A0A2M4AQD0   A0A182H4A2   W8AJC8   A0A1W7R6M1   A0A0N8ES95   A0A182H3V6   A0A2M4AMX4   A0A182HDB0  

Pubmed

8389039    20075255    26483478    26354079    24495485    26999592    + More

EMBL

L09635    AAA75005.1    GGFK01002631    MBW35952.1    GGFK01002619    MBW35940.1    + More
GGFK01002641    MBW35962.1    GGFK01002635    MBW35956.1    GGFK01002609    MBW35930.1    AAZX01006146    JXUM01136032    KQ568367    KXJ69026.1    GEHC01000967    JAV46678.1    KQ459986    KPJ18861.1    GGFM01007024    MBW27775.1    GGFL01005193    MBW69371.1    GGFK01009497    MBW42818.1    JXUM01109099    KQ565290    KXJ71123.1    GAMC01017930    JAB88625.1    GEHC01000872    JAV46773.1    GDUN01000090    JAN95829.1    JXUM01108242    KQ565213    KXJ71211.1    GGFK01008809    MBW42130.1    JXUM01034199    KQ561015    KXJ80028.1   

Proteomes

UP000002358    UP000069940    UP000249989    UP000053240   

PRIDE

V9GZQ1   

Pfam

PF03564   DUF1759        + More
PF05380   Peptidase_A17
PF18701   DUF5641
PF00665   rve
PF05585   DUF1758
PF17921   Integrase_H2C2
PF00628   PHD
PF00078   RVT_1

Interpro

IPR005312   DUF1759        + More
IPR001878   Znf_CCHC       
IPR008042   Retrotrans_Pao       
IPR040676   DUF5641       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR011011   Znf_FYVE_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR019787   Znf_PHD-finger       
IPR019786   Zinc_finger_PHD-type_CS       
IPR041588   Integrase_H2C2       
IPR008737   Peptidase_asp_put       
IPR001995   Peptidase_A2_cat       
IPR000253   FHA_dom       
IPR000477   RT_dom       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF53098   SSF53098        + More
SSF57903   SSF57903       
SSF57756   SSF57756       

Gene 3D

3.30.420.10     3.30.40.10    

ProteinModelPortal

V9GZQ1   A0A2M4A5G3   A0A2M4A5D7   A0A2M4A5H2   A0A2M4A568   A0A2M4A5C7   + More
K7JN15   A0A182G158   A0A1W7R681   A0A0N1IGH3   A0A2M3ZH18   A0A2M4CVY8   A0A2M4AQD0   A0A182H4A2   W8AJC8   A0A1W7R6M1   A0A0N8ES95   A0A182H3V6   A0A2M4AMX4   A0A182HDB0  

KEGG

NA   

GO

GO:0003964   GO:0008270   GO:0003676   GO:0015074   GO:0046872   GO:0004190  

Length:

438

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0032

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01459

outside

1  -  438

 

 

Pi

33.028939

Theta

57.056426

Tajima's D

0.730084

CLR

0.235755

CSRT

0.585370731463427

Interpretation

Uncertain