Gene

KWMTBOMO15493

Annotation

S33901_reverse_transcriptase_-_silkworm_transposon_Pao

Location

Bomo_Chr26(+):675126-676592      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.546

CDS

ATGAATTCCTTTACAAAAACTGAAAATATAAACAGACTCAGAAGGAACCTGAAAGGAAGGGCAAAGGAAGCCGTTGACGGAATACTTATAACGAACGCTGATCCGTCCGACGTCATAAGAAGTCTAGAAGCGCGATTCGGAAGACCGGAAACGATAGCCATAACGGAGTTAGACACGCTACGAGCTCTGCCACGACTAACAGAAACACCAAGAGACATATGTATATTCTCCAGTAAGGTGACCAACGCCGTAGCTACGCTTCGTGCATTAAATTGCACACATTACTTATATAATCCGGAAACTACCAAAACAATGTTAGAAAAACTCACACCAACACTACGATACCGATACTACGACTTCACCGCGATACAACCGAAGGAGGACCCGGATCTGATTAAATTTGAAAAATTCATGAAAAGAGAAGCCGAACTGTGCAGCCCTTATGCACAGCCTGAACAGGCGGGGCACTACTCGCAGCCCGCACAACATAACAGACGCACACAAAACGTGCACATAGTCAGTGAGAAGCCATCACGAGCTAAATGTCCGGTATGTAGCAACACTGAACACACCACAACAGACTGCTACATATTCAAGAAGGCAGAATCAAACACAAGATGGGACATCGCTAAGAATAAACACCTGTGTTTCCGATGTCTCAAGTATAGAAATAAAACCCACCACTGTAAACCGAAGACGTGTGGCATTAATGATTGCAAATATACTCACAACAAGATGCTACACTTCGACAGAAAAATTGAAAAAACAGACAAGAGTGACAAGGAAACAACAGAGAACATTAATTCCGCTTGGACCGGAAAACAGAAACAGTCCTATTTGAAAATAATCCCAGTCCAAGTACAAGGACCGATAGGCACGGTTGATACATACGCGCTGCTCGACGATGGATCAACGGTAACACTGATAGACGAAATCATCTGCAAGAAGACTGGAATAACAGGACCAATCGATCCGTTACACATACAGGCGATTAACAACATAAAATCAACGGAAACAAGGTCAAGAAGAGTCAACCTCACGCTCAGAGGCCTCAATAGTCGAAAAGAAATAATACAAGCGAGAACAGTTAACGACCTACAAGTAACAGCACAAAAAATACCAAAGGAACAGATAGATGAATATTCGCACCTACGAGACATCAGTGACATCATCACATACGAGAACGCGAAACCTGGAATCCTGATTGGCCAAGACAACTGGCACATGCTACTAGCTTCGAAAGTTAGACGAGGCAACAGGAATCAGCCAATAGCGTCACTGACACCTCTAGGCTGGGTATTGCATGGAGGTCGCACTCGTACTGTTACACACTACTCTACAAAGCAGCTTTGCCCTAATCAGCTCGTTTACGAGCTCACTGTTTTTCCATTAGAGTCATCATTTTTAGCTTTCATGTAA

Protein

MNSFTKTENINRLRRNLKGRAKEAVDGILITNADPSDVIRSLEARFGRPETIAITELDTLRALPRLTETPRDICIFSSKVTNAVATLRALNCTHYLYNPETTKTMLEKLTPTLRYRYYDFTAIQPKEDPDLIKFEKFMKREAELCSPYAQPEQAGHYSQPAQHNRRTQNVHIVSEKPSRAKCPVCSNTEHTTTDCYIFKKAESNTRWDIAKNKHLCFRCLKYRNKTHHCKPKTCGINDCKYTHNKMLHFDRKIEKTDKSDKETTENINSAWTGKQKQSYLKIIPVQVQGPIGTVDTYALLDDGSTVTLIDEIICKKTGITGPIDPLHIQAINNIKSTETRSRRVNLTLRGLNSRKEIIQARTVNDLQVTAQKIPKEQIDEYSHLRDISDIITYENAKPGILIGQDNWHMLLASKVRRGNRNQPIASLTPLGWVLHGGRTRTVTHYSTKQLCPNQLVYELTVFPLESSFLAFM

Uniprot

V9GZQ1   A0A2H1W498   A0A2H1WPL4   A0A2H1WIC2   A0A2H1W036   A0A0L7L2N6   + More
Q2MGA5   A0A3S2N5J7   A0A2H1WH18   A0A2A4JVN0   A0A2A4ISM8   A0A2A4IX21   A0A2H1VZ33   A0A1Y1LL75   A0A0L7KLZ3   A0A0L7KW57   H9JNE5   A0A0A9ZAM6   A0A0A9ZJ56   A0A0A9ZFI6   A0A2A4J6H0   A0A0L7L0N3   A0A0A9ZDG1   A0A0A9ZGM2   A0A0L7KYG1   A0A0A9WZV8   A0A1W7R681   A0A146LFU3   A0A336LFI5   A0A1W7R699   A0A226D351   A0A226DM06   A0A226DIM6   A0A226DH22   A0A1B0C9K2   A0A336M4E2   A0A2W1BC83   A0A226EKF8   A0A182H5B8   A0A226EDU9   A0A0L7L3C9   A0A182G158   A0A1W7R6M1   A0A0L7K3T3   A0A226E2P7   A0A226EEI4   A0A182HDB0   A0A0L7L2J0   A0A0K3CPX7   A0A0N1IGH3   A0A182GC70   A0A0L7L8K1   A0A182GI38   A0A2M4B931   A0A1Y1LL65   A0A226D278   A0A1Y1LN76   A0A1L8DIN5   A0A2M4CKZ8   A0A1L8DJ10   A0A2M4B962   A0A226EBV4   A0A2M3Z5X5   A0A226DV68   A0A0L7LU49   A0A1W7R6A0   A0A182JIZ3   A0A0L7KTK1   A0A2M4A568   A0A2M4A5G3   A0A2M4A5H2   A0A182HML5   W8AJC8   A0A1W7R6E5   A0A0N8ES95   A0A1W7R6F7   A0A2M4A5C7   A0A0K8SAC5   A0A2M4A5D7   A0A0L7LTT5   A0A182HEF9   A0A0K8SAC9   A0A182RWX5   A0A226CYV9   A0A226E274   K7JCQ3   A0A2M4B8T5   A0A2M4B8I4   A0A226D8F6   A0A2M4AQD0   A0A182PX74   A0A182S053   A0A336LWI0   A0A2M4AMX4   A0A182YRW4  

Pubmed

8389039    26227816    28004739    19121390    25401762    26823975    + More
28756777    26483478    23552491    26354079    24495485    26999592    20075255    25244985   

EMBL

L09635    AAA75005.1    ODYU01006218    SOQ47868.1    ODYU01010057    SOQ54892.1    + More
ODYU01008796    SOQ52706.1    ODYU01005530    SOQ46470.1    JTDY01003364    KOB69670.1    AF530470    AAQ09229.1    RSAL01000375    RVE42106.1    ODYU01008625    SOQ52365.1    NWSH01000532    PCG75836.1    NWSH01007951    PCG62741.1    NWSH01005440    PCG64209.1    ODYU01005022    SOQ45494.1    GEZM01052588    GEZM01052587    GEZM01052586    JAV74402.1    JTDY01008907    KOB64323.1    JTDY01005167    KOB67301.1    BABH01019236    GBHO01002130    JAG41474.1    GBHO01000309    JAG43295.1    GBHO01000310    JAG43294.1    NWSH01002773    PCG67551.1    JTDY01003744    KOB69058.1    GBHO01000307    JAG43297.1    GBHO01000308    JAG43296.1    JTDY01004423    KOB68175.1    GBHO01030330    JAG13274.1    GEHC01000967    JAV46678.1    GDHC01011496    JAQ07133.1    UFQS01005076    UFQT01005076    SSX16694.1    SSX35886.1    GEHC01000956    JAV46689.1    LNIX01000039    OXA39294.1    LNIX01000015    OXA46575.1    LNIX01000019    OXA44537.1    OXA44855.1    AJWK01002442    UFQT01000545    SSX25125.1    KZ150147    PZC72872.1    LNIX01000003    OXA57597.1    JXUM01111221    KQ565482    KXJ70922.1    LNIX01000004    OXA55408.1    JTDY01003275    KOB69826.1    JXUM01136032    KQ568367    KXJ69026.1    GEHC01000872    JAV46773.1    JTDY01012070    KOB52334.1    LNIX01000007    OXA52015.1    OXA55241.1    JXUM01034199    KQ561015    KXJ80028.1    JTDY01003372    KOB69657.1    LN877231    CTR11689.1    KQ459986    KPJ18861.1    JXUM01053894    KQ561796    KXJ77517.1    JTDY01002318    KOB71670.1    JXUM01065274    KQ562339    KXJ76116.1    GGFJ01000402    MBW49543.1    JAV74399.1    OXA39263.1    JAV74401.1    GFDF01007772    JAV06312.1    GGFL01001727    MBW65905.1    GFDF01007760    JAV06324.1    GGFJ01000401    MBW49542.1    LNIX01000005    OXA54497.1    GGFM01003133    MBW23884.1    LNIX01000012    OXA48116.1    JTDY01000085    KOB78972.1    GEHC01000947    JAV46698.1    JTDY01005815    KOB66592.1    GGFK01002635    MBW35956.1    GGFK01002631    MBW35952.1    GGFK01002641    MBW35962.1    APCN01008934    APCN01008935    GAMC01017930    JAB88625.1    GEHC01000955    JAV46690.1    GDUN01000090    JAN95829.1    GEHC01000945    JAV46700.1    GGFK01002609    MBW35930.1    GBRD01015592    GBRD01015588    JAG50238.1    GGFK01002619    MBW35940.1    JTDY01000114    KOB78779.1    JXUM01005879    KQ560203    KXJ83865.1    GBRD01015590    JAG50236.1    LNIX01000052    OXA37804.1    LNIX01000008    OXA51087.1    AAZX01014669    GGFJ01000302    MBW49443.1    GGFJ01000218    MBW49359.1    LNIX01000029    OXA41423.1    GGFK01009497    MBW42818.1    UFQT01000137    SSX20677.1    GGFK01008809    MBW42130.1   

Proteomes

UP000037510    UP000283053    UP000218220    UP000005204    UP000198287    UP000092461    + More
UP000069940    UP000249989    UP000053240    UP000075880    UP000075840    UP000075900    UP000002358    UP000075885    UP000076408   

PRIDE

V9GZQ1    H9JNE5   

Pfam

PF03564   DUF1759        + More
PF05585   DUF1758
PF05380   Peptidase_A17
PF00665   rve
PF18701   DUF5641
PF14529   Exo_endo_phos_2
PF00078   RVT_1
PF00628   PHD
PF17921   Integrase_H2C2
PF01565   FAD_binding_4
PF09129   Chol_subst-bind
PF10501   Ribosomal_L50
PF10351   Apt1
PF10347   Fmp27_GFWDK

Interpro

IPR005312   DUF1759        + More
IPR001878   Znf_CCHC       
IPR001995   Peptidase_A2_cat       
IPR008737   Peptidase_asp_put       
IPR040676   DUF5641       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR008042   Retrotrans_Pao       
IPR012337   RNaseH-like_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR021109   Peptidase_aspartic_dom_sf       
IPR011011   Znf_FYVE_PHD       
IPR019786   Zinc_finger_PHD-type_CS       
IPR001965   Znf_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR019787   Znf_PHD-finger       
IPR041588   Integrase_H2C2       
IPR006094   Oxid_FAD_bind_N       
IPR016166   FAD-bd_PCMH       
IPR016164   FAD-linked_Oxase-like_C       
IPR016170   Cytok_DH_C_sf       
IPR015213   Cholesterol_OX_subst-bd       
IPR036318   FAD-bd_PCMH-like_sf       
IPR016169   FAD-bd_PCMH_sub2       
IPR016167   FAD-bd_PCMH_sub1       
IPR036875   Znf_CCHC_sf       
IPR001841   Znf_RING       
IPR002999   Tudor       
IPR000048   IQ_motif_EF-hand-BS       
IPR018305   Ribosomal_L50_mt       
IPR019443   FMP27_C       
IPR019441   FMP27_GFWDK_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF56219   SSF56219       
SSF57903   SSF57903       
SSF56176   SSF56176       
SSF55103   SSF55103       
SSF57756   SSF57756       

Gene 3D

3.30.420.10     3.60.10.10     2.40.70.10     3.30.40.10     3.30.43.10     3.30.465.10     3.40.462.10    

ProteinModelPortal

V9GZQ1   A0A2H1W498   A0A2H1WPL4   A0A2H1WIC2   A0A2H1W036   A0A0L7L2N6   + More
Q2MGA5   A0A3S2N5J7   A0A2H1WH18   A0A2A4JVN0   A0A2A4ISM8   A0A2A4IX21   A0A2H1VZ33   A0A1Y1LL75   A0A0L7KLZ3   A0A0L7KW57   H9JNE5   A0A0A9ZAM6   A0A0A9ZJ56   A0A0A9ZFI6   A0A2A4J6H0   A0A0L7L0N3   A0A0A9ZDG1   A0A0A9ZGM2   A0A0L7KYG1   A0A0A9WZV8   A0A1W7R681   A0A146LFU3   A0A336LFI5   A0A1W7R699   A0A226D351   A0A226DM06   A0A226DIM6   A0A226DH22   A0A1B0C9K2   A0A336M4E2   A0A2W1BC83   A0A226EKF8   A0A182H5B8   A0A226EDU9   A0A0L7L3C9   A0A182G158   A0A1W7R6M1   A0A0L7K3T3   A0A226E2P7   A0A226EEI4   A0A182HDB0   A0A0L7L2J0   A0A0K3CPX7   A0A0N1IGH3   A0A182GC70   A0A0L7L8K1   A0A182GI38   A0A2M4B931   A0A1Y1LL65   A0A226D278   A0A1Y1LN76   A0A1L8DIN5   A0A2M4CKZ8   A0A1L8DJ10   A0A2M4B962   A0A226EBV4   A0A2M3Z5X5   A0A226DV68   A0A0L7LU49   A0A1W7R6A0   A0A182JIZ3   A0A0L7KTK1   A0A2M4A568   A0A2M4A5G3   A0A2M4A5H2   A0A182HML5   W8AJC8   A0A1W7R6E5   A0A0N8ES95   A0A1W7R6F7   A0A2M4A5C7   A0A0K8SAC5   A0A2M4A5D7   A0A0L7LTT5   A0A182HEF9   A0A0K8SAC9   A0A182RWX5   A0A226CYV9   A0A226E274   K7JCQ3   A0A2M4B8T5   A0A2M4B8I4   A0A226D8F6   A0A2M4AQD0   A0A182PX74   A0A182S053   A0A336LWI0   A0A2M4AMX4   A0A182YRW4  

KEGG

NA   

GO

GO:0003964   GO:0003676   GO:0008270   GO:0004190   GO:0015074   GO:0046872   GO:0071949   GO:0016491   GO:0016021   GO:0005739   GO:0071564  

Length:

472

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0094

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.00780

outside

1  -  472

 

 

Pi

210.199874

Theta

15.099285

Tajima's D

3.6773

CLR

36.352449

CSRT

0.99670016499175

Interpretation

Uncertain