Silkworm Genome Informatics Database

Gene

KWMTBOMO15455

Pre Gene Modal

BGIBMGA004765

Annotation

PREDICTED:_structural_maintenance_of_chromosomes_protein_2_[Amyelois_transitella]

Location

Bomo_Chr25(-):14260463-14272290 View in EpiBrowser

Full name

Structural maintenance of chromosomes protein

Location in the cell

Cytoplasmic Reliability : 1.98 Nuclear Reliability : 1.543

CDS

ATGTTTATTAAGTCAATAGTGTTAGATGGCTTCAAGTCTTACGGAAACCGAGTGGAAATTACTGGATTTGATCCAGAATTTAATGCGATCACTGGTCTAAATGGGACTGGAAAATCAAATATCTTAGATTCTATATGTTTCGTACTTGGAATCACAAATTTATCGAATGTACGAGCAAGCAGCTTGCAGGAGCTTATTTACAAGCATGGGCAGGCAGGTATCACCAAAGCAACAGTTAGCATTACCTTCGACAACAGAGATAAGAGACAATGTCCGATTGGCTATGAGAATCATGATGAGATTACTGTCACTAGACAGGTGGTGATGGGTGGTAAGAATAAATACCTTATAAATGGTATCAATGTCCAAAACAAGAGGGTCAGTGACTTATTCTGTTCGGTTCAGCTTAATGTCAATAACCCACACTTCCTCATCATGCAGGGAAGGATTACTAAGGTGCTAAATATGAAACCTCCTGAGATATTATCAATGGTAGAGGAAGCGGCAGGTACAAGAATGTATGAAGCTAAAAAACAAGCAGCACAGAAAACTATTGAGAAGAAAGATGCAAAGCTCCGGGAACTTAATGATATAATAAGAGAAGACATAGCACCTAAACTTCAGAAGCTGCAAGATGAAAGATCTCAGTTCCAAGAATATCAGAAGGTTGTCAGAGAATTGGAGAATATCACCAGGCTGTGTGTCGCTTGGAAGTATGTTTCTGCTGAAGAGCAAACCAAAGCAGCAGAGGGAAAAGTCACGCAAGTGCAGGACGACATTAAATTGAAAAAAGAGACTATTAAAAACAATGAGAAAGAAATGAAAGAGCTGGATAAGCAAGTTGTTGACTTAAACAAAAAACTGGATGAGGAGAGTGGGAATGTCCTCAAAGATTTGGAAGTAGAACTTCAAAACTTGGAGAAGGTTGAAGCAGCAGCAAGTTCACAATATAAAGGCAGCAAAGAAGCCCTGAGCGGACACGAGAAGAGAGTCAAACTACTCGAAAAGGCACTGGCTGAGGACGAGCAGGCTCTCACATCAAAGCAACAGATTCTTAATGAGGTCTCGTCAACATTCGAGAACCTTCGCACATCTAGTGAGACCAGTGAGAAAGCTTTAGCGGAAGCACAACAGAAGTTCTTGGCCGTGAGCACCGGGAAGGAAGATGCTTCTGAATCGCTGCAGGACCAGCTAATGGCTGCCAAACAACAGGCGTCGGAGGCGTCCACTCGCATCACCTCGGCCATGATGGACAAGAAGCACGCCGAGGAGAGATTGAAAACTTTGGAGAAGGAGTTCACTACCAGCAGCAAACAGTACGACGCGGATCAGGAGAGCATCCGGCGGCAGCAGGCGCAGGTCGAGCAGCTGGAGCGCGAGCTGGCGGGGCTGGCGCACGACGAGTCCCGCGTGACGTCACTGGGGGCGGCGGTGCGGGGCGCGCAGGGGGCGGCGCGGGGGGCGCGGGACCGGCGGGACGCGCTGGCGGCGGCGCTGCAGCGGTGCCACTTCCGGTACTCCCCCCCCGACCCGCACTTCGACCGCGCCAGGGTCGCAGGTACCGTCTGCAAGCTGATCGACGTGTGTGATCCGGTGTACTGCACCGCCCTGGAGACGGCGGCCGGAGGACGGTTATACAATGTAGTGGTGGACACCGAGGTCACGAGCAAGCTGCTGCTACAGCGGGGCAACCTGCAGACCAGAACTACCATCATACCGCTCAACAAGATCTCCGGACAGGTCATCGACAAGAGAATTGTGCAGATAGCTCAGGAGATTGGTGGAGGTCCGGAGAACGTGCAGCTGGCCTTGGACCTGATATCGTTCGACAGCCGCCTGCGCCCCGCCATGGCGTGGGTGTTCGGCTCCACGCTCGTGTGCCGCGACCTCGACACCGCCAAGCGCGTCACCTTCCACCGCGCCGTGCGCCGCCGCTGCGTCACGCTCGACGGCGACGTGTTCGACCCCTCCGGCACGCTCTCCGGCGGCGCCGCGCTCAAGGCACGACGACATAATATATCTTGTTTATATTTTTGTATTTTAGGCGGGTCGGTGCTGCTGCAGCTGCAGGAGCTGAAGCAGCTGGAGCAGCAGGTGCAGGCGGCCGAGGCGCGGCTGGCGCAGCTCACGGAGGAGCTGGGCTGCGCGCAGCAGGCTGCCGAGAGCTACGCCGCTATACAACAGAAGTGCGAGGCGGCGCGGCTGGGCGCGCGCGCGGCGGCGGCGCGGCTGGGCGGCACGGCGCGCGCGCAGCTGCACGCCGAGATCCAGGCTCTGCGCGCGCAGGCGGCCCAGCTCGCGGCGGCGCTGGAGCAGGACGAGCTCGTGCAGGACGAAGCGGCCGGCCGGGCCCGCGACCTGGAGGCCAAGCTCAAGGACATCAAGGGACACCGAGAGAGAGAATATAAGAAAGCAGAAGAGGCATTGAAGAAAGCAAAGCGAGACGTGGAGGTGCACGGCGGCGCGTGGAAGCTGCGCGAGCAGGAGCTGGAGACCCTGCGGCTGGAGGCGGCGGAGCTGCAGCGCGGCGCCGCGGCCGCACGCCACCAGCTGCACGAGCACGCGCGCGCCGCCGCCGACCTGGCACGCGCACTGCACGACGCCGCGCGCAGCCGGGACCACGCGCAGGAAGCAGTGAAGGAGATGCAGGCGCGAATAAAACATCAGAAAACGGAGATCGCGGGCCGGAGCACCGACATATCTCGCCTCGTGCAGCAGAAGGAGCGCCTGGCCAAGAGCAGCAGCGAGCTGGAGCTCGGCGTCAAGGAGCTGGACTACCGCATCAAGGAGCTGCAGACTGAGGCTCTCGATTGTCAGAAGAAGATGAGGCAACTGGAGTCGGAGAACCCGTGGATCCCGTCGGAGCGGCAGTACTTCGGCGCGCCGGGCGGCCTCTACGACTTCGAGGGTCGGCAGGCGCACGTGGCCGCCAGCCGCCTGCACCAGCTCGCCGAGCGCAGGGACCGCCTCGCGCGAGGACTCAACGCCAGGGCGCACACGCTGCTCGGCAAGGAGGAGGACCAGTACCAAGACGTCATGAGGAAGAAGCAGATCGTGGAGGCGGACAGAGCCAAGCTGGTGCAGGTCATGGCGGAGCTGGACGAGAAGAAGAAGAAGACGTTAGTGACGGCCTGCGAGCAAGTCAACCGGGACTTCGGGTCCATCTTCAGCACCCTGCTGCCCGGCGCGCAGGCCAAGCTGCAGCCGCCCGACGGACTCTCCGTGCTGGACGGGCTCGAGGTGAAGGTGGGGTTCAACATGACGTGGAAGGAGTCCCTGGGCGAGCTGTCGGGTGGGCAGCGGTCGCTGGTGGCGCTAGCGCTGGTGCTGGCGATGCTGCTGTTCAAGCCGGCTCCGCTGTACATCCTGGACGAGGTGGACGCGGCGCTGGACCTGTCGCACACGCAGAACATCGGCATCATGCTCAAGGAACACTTCCGACACTCGCAGTTCATCATCGTGTCGCTGAAGGACGGCATGTTCAACAACGCCAACGTTCTGTTCCGCACCCGCTTCGTGGACGGCATGTCCTCCGTGCAGCGCACCGCCGCGCGACGCTAG

Protein

MFIKSIVLDGFKSYGNRVEITGFDPEFNAITGLNGTGKSNILDSICFVLGITNLSNVRASSLQELIYKHGQAGITKATVSITFDNRDKRQCPIGYENHDEITVTRQVVMGGKNKYLINGINVQNKRVSDLFCSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMVEEAAGTRMYEAKKQAAQKTIEKKDAKLRELNDIIREDIAPKLQKLQDERSQFQEYQKVVRELENITRLCVAWKYVSAEEQTKAAEGKVTQVQDDIKLKKETIKNNEKEMKELDKQVVDLNKKLDEESGNVLKDLEVELQNLEKVEAAASSQYKGSKEALSGHEKRVKLLEKALAEDEQALTSKQQILNEVSSTFENLRTSSETSEKALAEAQQKFLAVSTGKEDASESLQDQLMAAKQQASEASTRITSAMMDKKHAEERLKTLEKEFTTSSKQYDADQESIRRQQAQVEQLERELAGLAHDESRVTSLGAAVRGAQGAARGARDRRDALAAALQRCHFRYSPPDPHFDRARVAGTVCKLIDVCDPVYCTALETAAGGRLYNVVVDTEVTSKLLLQRGNLQTRTTIIPLNKISGQVIDKRIVQIAQEIGGGPENVQLALDLISFDSRLRPAMAWVFGSTLVCRDLDTAKRVTFHRAVRRRCVTLDGDVFDPSGTLSGGAALKARRHNISCLYFCILGGSVLLQLQELKQLEQQVQAAEARLAQLTEELGCAQQAAESYAAIQQKCEAARLGARAAAARLGGTARAQLHAEIQALRAQAAQLAAALEQDELVQDEAAGRARDLEAKLKDIKGHREREYKKAEEALKKAKRDVEVHGGAWKLREQELETLRLEAAELQRGAAAARHQLHEHARAAADLARALHDAARSRDHAQEAVKEMQARIKHQKTEIAGRSTDISRLVQQKERLAKSSSELELGVKELDYRIKELQTEALDCQKKMRQLESENPWIPSERQYFGAPGGLYDFEGRQAHVAASRLHQLAERRDRLARGLNARAHTLLGKEEDQYQDVMRKKQIVEADRAKLVQVMAELDEKKKKTLVTACEQVNRDFGSIFSTLLPGAQAKLQPPDGLSVLDGLEVKVGFNMTWKESLGELSGGQRSLVALALVLAMLLFKPAPLYILDEVDAALDLSHTQNIGIMLKEHFRHSQFIIVSLKDGMFNNANVLFRTRFVDGMSSVQRTAARR

Similarity

Belongs to the SMC family.

Uniprot

A0A212EVY2 A0A1B6GEP0 A0A1B6K064 A0A195FRH6 A0A151WH58 E2BG60 + More
F4WC57 A0A195EKD8 A0A232FFN7 A0A182QA09 A0A1I8MKK4 A0A1I8NZN6 A0A194RJF7 A0A084VIH9

Pubmed

22118469 20798317 21719571 28648823 25315136 26354079 + More
24438588

EMBL

AGBW02012106 OWR45652.1 GECZ01008871 JAS60898.1 GECU01002869 JAT04838.1 + More
KQ981305 KYN42887.1 KQ983135 KYQ47171.1 GL448115 EFN85328.1 GL888070 EGI68037.1 KQ978739 KYN28730.1 NNAY01000320 OXU29249.1 AXCN02002112 KQ460118 KPJ17687.1 ATLV01013356 KE524854 KFB37773.1

Proteomes

UP000007151 UP000078541 UP000075809 UP000008237 UP000007755 UP000078492 + More
UP000215335 UP000075886 UP000095301 UP000095300 UP000053240 UP000030765

Pfam

PF02463 SMC_N + More
PF06470 SMC_hinge

Interpro

IPR036277   SMC_hinge_sf        + More
IPR003395   RecF/RecN/SMC_N
IPR010935   SMC_hinge
IPR027417   P-loop_NTPase
IPR024704   SMC
IPR027120   Smc2_ABC

SUPFAM

SSF75553 SSF75553 + More
SSF52540 SSF52540

CDD

cd03273 ABC_SMC2_euk

ProteinModelPortal

A0A212EVY2 A0A1B6GEP0 A0A1B6K064 A0A195FRH6 A0A151WH58 E2BG60 + More
F4WC57 A0A195EKD8 A0A232FFN7 A0A182QA09 A0A1I8MKK4 A0A1I8NZN6 A0A194RJF7 A0A084VIH9

PDB

3L51 E-value=3.71168e-39, Score=410

KEGG

101742926 K06674 structural maintenance of chromosome 2 | (RefSeq) structural maintenance of chromosomes prote

GO

GO:0005524 GO:0051276 GO:0005634 GO:0005694 GO:0005515 GO:0030145 GO:0043565 GO:0003677 GO:0003707 GO:0006281 GO:0006259

Subcellular location

Nucleus

Length:

1186

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.08904

Exp number, first 60 AAs:

0.00265

Total prob of N-in:

0.00016

outside

1 - 1186

Pi

191.825512

Theta

169.578135

Tajima's D

0.158238

CLR

0.760526

CSRT

0.409529523523824

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics