Gene

KWMTBOMO15452

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr25(+):14049721-14052322      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.022 Peroxisomal   Reliability : 1.082 PlasmaMembrane   Reliability : 1.201

CDS

ATGCGCCCATGGGCCCCCCCGATCACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGACATCGTCTCGGCGCTGTTCCCGCAGGAGCGGGAGGGATTTGTCGCGCCCGCTATGGACTCGCCGCCGGAATACGACGGCGAAGTCCCTGCCGAGGTGCCCCATATAACGGGGGCGGAGCTCCGTGTGGCCGTGCGCAAAATGTGCGCGAAGGACACTGCACCCGGCCCGGACGGTGTCCATGGCCGGGTTTGGGCCTTGGCTCTTGGTGCCCTGGGGGACCGACTCTTGAGGCTTTACAACTCCTGCCTCGAGACGGGACGGTTTCCTTCATCGTGGAGGACGGGCAGACTCGTGCTGTTGAGAAAGGAGGGGCGCCCGGCGGATACTGCTGCCGGGTACCGTCCCATCGTGTTGCTGGATGAGGTGGGCAAGCTGCTGGAACGCATTCTGGCAGCCCGCATCATCCAGCATCTGGTCAGGGTGGGACCCGATCTGTCGGCGGAGCAATATGGCTTCCGAGAGGGCCGCTCAACGGTAGACGCGATCCTTCGCGTGCGGGCCCTCTCGGATGAGGCCGTTTCCGGGGGTGGGGTGGCTTTGGCGGTGTCACTCGATATCGCCAATGCGTTCAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAACGACACGGAGTGCCCCCCTACCTTCGCCGGCTGGTGGGTTCCTACTTGGAAGACAGATCGGTCACGTGTACCGGACACGGTGGGATCGTGCACCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTGCTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTGAGCGTAATCTGTTACGCAGACGACACGTTGGTCGTGGCCCGGGGGGGAGTTTTGCTGAGTCTGCCCGTCTTGCTACGGCTGGGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGTATCGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATTCTAGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGAATCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTCCTTCCCAATGTTGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACAGGGGTGGTGCGATCAATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCGAAGCTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCTTTCGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTCCTGGAGGCGGAGGCGCTCGCTGCTGACTATCAGTGGCGGGCTGACCTTCGTGTACGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTACTGGAGTCATGGTCTAGACGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTTCTTGTGAACTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGCGACTTGGACACGGCGGAGCACACGCTCGTCGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGTGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAGGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATATCGCCCAAGCCCTGGCCCTCTAA

Protein

MRPWAPPITERLQPQQLRDIVSALFPQEREGFVAPAMDSPPEYDGEVPAEVPHITGAELRVAVRKMCAKDTAPGPDGVHGRVWALALGALGDRLLRLYNSCLETGRFPSSWRTGRLVLLRKEGRPADTAAGYRPIVLLDEVGKLLERILAARIIQHLVRVGPDLSAEQYGFREGRSTVDAILRVRALSDEAVSGGGVALAVSLDIANAFNTLPWSVIGGALERHGVPPYLRRLVGSYLEDRSVTCTGHGGIVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGVLLSLPVLLRLGPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQNLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRADLRVRGVARPSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVNWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECHHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADIAQALAL

Uniprot

Q868Q4   Q8MY27   Q8MY33   Q8MY31   Q8MY35   A0A2W1C3J5   + More
A0A0J7N1D9   A0A0J7KLT9   A0A0J7N7S8   A0A0J7KS67   A0A0J7KIY5   A0A0J7K366   A0A2S2N8I2   A0A2S2PBP5   A0A0J7KYD2   X1WJY4   J9LJ80   A0A0J7NAV8   A0A2S2PEZ7   A0A2H8TIE5   A0A0J7MY17   J9LVU7   A0A0J7KL06   A0A0J7NEG9   A0A2S2P488   J9JWJ3   A0A0J7KMG5   A0A0J7NMN5   A0A0J7JZ13   A0A2H8TR36   A0A2S2NJ82   X1WT13   J9KUM6   X1WMW4   J9KNG8   J9KNS1   A0A2S2NQQ6   A0A2S2PEU2   A0A0J7KQY4   A0A142LX45   A0A2S2PRL8   A0A1W7R6I9   A0A023EW96   J9KNN8   T1DCM0   A0A0J7NJI3   X1WSG8   J9KT70   A0A1W7R6C5   A0A0E3W2C5   A0A2S2P7D1   T1DG59   Q9N9Z1   W8ANK7   W8ADE4   T1DG89   A0A2M4BC18   Q868R6   A0A2S2NYY3   A0A0J7KF91   A0A0J7KIS5   A0A2M4BC24   Q868S8   A0A2M4CSA9   J9M6A5   V9GZD9   K7JP45   A0A0J7MYL9   A0A2M4CJ33   Q868S0   Q868S2   J9JZR8   J9LB02   A0A034WR48   J9LQQ1   J9KT61   A0A2M4CL98   A0A1B6KDF3   J9LQJ9  

Pubmed

12644555    28756777    25527032    24945155    24330624    24495485    + More
1328871    20075255    25348373   

EMBL

AB090825    BAC57926.1    AB078935    BAC06462.1    AB078930    BAC06454.1    + More
AB078931    BAC06456.1    AB078929    BAC06452.1    KZ149896    PZC78733.1    LBMM01012027    KMQ86470.1    LBMM01005733    KMQ91252.1    LBMM01008682    KMQ88705.1    LBMM01003679    KMQ93242.1    LBMM01006954    KMQ90166.1    LBMM01015565    KMQ84759.1    GGMR01000779    MBY13398.1    GGMR01014195    MBY26814.1    LBMM01002052    KMQ95336.1    ABLF02011238    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    LBMM01007425    KMQ89740.1    GGMR01015159    MBY27778.1    GFXV01002090    MBW13895.1    LBMM01014122    KMQ85315.1    ABLF02034925    LBMM01006063    KMQ90967.1    LBMM01006110    KMQ90925.1    GGMR01011682    MBY24301.1    ABLF02013358    ABLF02013361    ABLF02054869    LBMM01005465    KMQ91492.1    LBMM01003245    KMQ93755.1    LBMM01019839    KMQ83438.1    GFXV01003903    MBW15708.1    GGMR01004600    MBY17219.1    ABLF02014378    ABLF02041557    ABLF02059310    ABLF02005203    ABLF02041316    ABLF02018808    GGMR01006838    MBY19457.1    GGMR01015354    MBY27973.1    LBMM01004262    KMQ92649.1    KU543683    AMS38371.1    GGMR01019493    MBY32112.1    GEHC01000915    JAV46730.1    GAPW01000192    JAC13406.1    ABLF02023257    GALA01001777    JAA93075.1    LBMM01004261    KMQ92650.1    ABLF02004597    ABLF02041324    ABLF02010223    GEHC01000964    JAV46681.1    HACL01000281    CFW94575.1    GGMR01012748    MBY25367.1    GALA01000302    JAA94550.1    AJ278684    CAB99192.1    GAMC01020517    JAB86038.1    GAMC01020519    GAMC01020515    JAB86040.1    GALA01001776    JAA93076.1    GGFJ01001453    MBW50594.1    AB090819    BAC57914.1    GGMR01009778    MBY22397.1    LBMM01008445    KMQ88871.1    LBMM01006977    KMQ90149.1    GGFJ01001454    MBW50595.1    AB090813    BAC57902.1    GGFL01004046    MBW68224.1    ABLF02020969    M93691    AAA29365.1    AAZX01001144    LBMM01013668    KMQ85535.1    GGFL01001192    MBW65370.1    AB090817    BAC57910.1    AB090816    BAC57908.1    ABLF02009709    ABLF02009711    ABLF02011136    ABLF02014426    GAKP01002292    JAC56660.1    ABLF02030663    ABLF02041312    ABLF02009073    ABLF02030702    ABLF02042963    GGFL01001916    MBW66094.1    GEBQ01030504    JAT09473.1    ABLF02018471    ABLF02058352   

Proteomes

UP000036403    UP000007819    UP000002358   

PRIDE

Q868Q4    Q9N9Z1   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF00098   zf-CCHC
PF13966   zf-RVT
PF13359   DDE_Tnp_4
PF12017   Tnp_P_element
PF00075   RNase_H

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR026960   RVT-Znf       
IPR021896   Transposase_37       
IPR027806   HARBI1_dom       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.30.420.10    

ProteinModelPortal

Q868Q4   Q8MY27   Q8MY33   Q8MY31   Q8MY35   A0A2W1C3J5   + More
A0A0J7N1D9   A0A0J7KLT9   A0A0J7N7S8   A0A0J7KS67   A0A0J7KIY5   A0A0J7K366   A0A2S2N8I2   A0A2S2PBP5   A0A0J7KYD2   X1WJY4   J9LJ80   A0A0J7NAV8   A0A2S2PEZ7   A0A2H8TIE5   A0A0J7MY17   J9LVU7   A0A0J7KL06   A0A0J7NEG9   A0A2S2P488   J9JWJ3   A0A0J7KMG5   A0A0J7NMN5   A0A0J7JZ13   A0A2H8TR36   A0A2S2NJ82   X1WT13   J9KUM6   X1WMW4   J9KNG8   J9KNS1   A0A2S2NQQ6   A0A2S2PEU2   A0A0J7KQY4   A0A142LX45   A0A2S2PRL8   A0A1W7R6I9   A0A023EW96   J9KNN8   T1DCM0   A0A0J7NJI3   X1WSG8   J9KT70   A0A1W7R6C5   A0A0E3W2C5   A0A2S2P7D1   T1DG59   Q9N9Z1   W8ANK7   W8ADE4   T1DG89   A0A2M4BC18   Q868R6   A0A2S2NYY3   A0A0J7KF91   A0A0J7KIS5   A0A2M4BC24   Q868S8   A0A2M4CSA9   J9M6A5   V9GZD9   K7JP45   A0A0J7MYL9   A0A2M4CJ33   Q868S0   Q868S2   J9JZR8   J9LB02   A0A034WR48   J9LQQ1   J9KT61   A0A2M4CL98   A0A1B6KDF3   J9LQJ9  

PDB

6AR3     E-value=3.34595e-05,     Score=115

KEGG

101737183    no KO assigned | (RefSeq) uncharacterized LOC101737183

GO

GO:0003964   GO:0016746   GO:0016021   GO:0003676   GO:0008270   GO:0004519   GO:0004803   GO:0006313   GO:0004523  

Length:

648

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.202550000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00135

outside

1  -  648

 

 

Pi

37.74953

Theta

3.608738

Tajima's D

1.316059

CLR

0

CSRT

0.775761211939403

Interpretation

Uncertain