Gene

KWMTBOMO15445

Pre Gene Modal

BGIBMGA004752

Annotation

PREDICTED:_hemicentin-1?_partial_[Plutella_xylostella]

Location

Bomo_Chr25(+):13662951-13696306      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.257

CDS

ATGGCGTTATCAAAAAAAAACTGTCATCATCTGTGGCATTTAACTCACGTCACATCGCACGCAATGCCAACATCGGACGTGCAAGGCGTTCTGGGGAAGAAAGCTTCGTTACCCTGCGACATTCAGCCTCTGCATTCAGAAGACGAAGTCGTGATGGTGCTCTGGTTCAAGGAGTCTGATGGAGATCAACCTTTATATAGCTACGACATTCGTGGCCGGTCACAAAGTCAGCCCAAGCTGTGGTCTTCGCCGACCGTGTTCGCAAACCGGGCATTCTTCAGAGGAACCGCTACGCCTGCAGTCTTGATGCTGGACAATGTGATGGCCACTGATGCAGGAGTCTACAGGTGTAGAGTAGATTTCAAGAATTCGCCCACAAGAAATCTAAAAGTCAATTTTACTGTCATAATGCCTCCAAATCGTCCGACGATATTCGATGCCAAACGAAGAGACCGAACAAAATTAGTCGAACCATACAATGAAGGGGCCAACGTATTGCTAATCTGCGAAGTCGAAGGAGGAAATCCAAGACCTCGTGTAACGTGGTACCTGGAGAACACGGTGATAGACGACTCATTTGAGCAGCGTCCTGATGGAGTAACCGTCAACACCCTGACCTTCCCCAACGTGGGTCGTCAGCACCTCAACGCAAGACTCGTCTGCCAAGCTTCGAACACCAATCTGGCGCCACCGGAAACGAAAGTCCTGATATTAGACATTAATTTGAAGCCGATATCGGTGACGATCCTGACGAAGGAGAAGCAAATATCGGCCGACAAAAGGTACGAAGTGGAGTGCAAGACGACGGGCTCCCGGCCCGAGGCGTATGTCACTTGGTGGAAGAACAATAGACAGCTGAAGCGGATGGCAAAAAACTTCTCAGAGAACAATGAGACGCTAAGCGTTTTGAGTTTAGTGCCAGGGGTTGAAGATGACGGGAAATACCTAGCTTGCCGAGCCGAGAACAAACATATACCAGATTCAGCAATTGAAGACAAGTGGCGACTAAATGTTCACTATGTACCAATAGTGGATCTGAAAATGGGCTCCAACCTAAACCCTGACGAGATCAAGGAAGGGGACGACGTTTATTTCGAGTGCACTGTCAAGGCTAATCCGAAGACACATCGCCTTGTTTGGTTTCACGATAACTCTGAAATTTACCACAACGAAGCAGCAGGTGTGATTCTTAGTGCTCAGAGCTTGGTCCTTCAGAGCGTCACTAGAGCAGCTGCTGGGGACTACACCTGCATGGCTGCTAACAGTGAAGGAAAAGGAACTAGCAACCCGGTGACGCTGCTAGTGCGATATGCCCCTGTTTGCGCTGAACGAAGAGATGGAGAACTATTTGGAGCCCTCAAGCATGAAACAGTATCTCTGCATTGTTCTGTAGATGCGAACCCCGCACTGGTGTCTTTCCACTGGACCTTTAATAATTCTGGCGAACAAACGGAAATCCCACCAAGGTTATACAGTAGTCACGGCCACACATCCACCTTGAACTATACTCCGACAACGGACATGGAGTATGGAACTCTGGCCTGTTTCGGCGAGAACACTGTTGGACAACAAAAAGTACCGTGTCTATTCCAATTAGTAGCTGCAGGTCGTCCATTCCCACTTCAGAACTGCACAGTGGCTAACCAAAGCATTGATTCTCTGTATGTCGAGTGTGTTGAGAACTTCGATGGTGGACTGCCACAGACCTTCCTGATGGAGCTGCTTGAGCTGCCCTCATTAGCAGTCCGATACAACGTATCTACAAACAGGACACCACCCTACTTCGAAATCAAAGGTCTTCCGCCAGGCGTTAGCTACAGGATAGAGCTGTATGCTGTCAACGCAAAAGGCAGAAGCGATGTGTCTACCATTGAAACAGTCACTTTGAAGGGTCAAGCTAAATTTACTGGTGAAAGCAACGCCCTCGGAATGTCACCAGTCTTAGCTTCAATAGCTGCGTCATCAGCTCTACTGGCTGCAGCTGTCTGTGGGGTTCTGGCTGTACTCTATAAGAAGCATAGCAACAGACAACGACGGCTTCCCGCCAAACATGCCCCATTGAGTGAATCAATGTACGTCGAACGAACACCGAACTGTCCGACTCCAGTGAAGCAGGAGGTGGAGTCCCGCGCCAGCAGTACGGAGCCCCGAGACCAGAGGTCGGAGCGAGGGGCCAGAGGGGCTTTACTGCACACATCTGATCCCATGGCTGACGACGCTGATCCCGATATAATTCCTTGTTTATATGAGAGGAGACCAGTGTCCAACGGGTACATGAGCCTCCAGAGACCTCCGTCCAGTACAAAGATCGCCAAGATGAGCGGTGACGACATTCGTTCAGAGCCCGACGGCGGCGCCTACTACAACGATTATAGGAAAAAGGATTACAAAATACCTTTAACTAGCTCGTACCACAGTCTAGGGAGAGCCAACAAGGGCGTCACGGCGTGCAGCCCTGGTTCCGCGACGGGCGTGACGTCATCACTGACGCAACATCGACTGCGGCCGGAAGTCGTCACCACCTCGCATCGAGTGCAAGAGAGCTGTATATAA

Protein

MALSKKNCHHLWHLTHVTSHAMPTSDVQGVLGKKASLPCDIQPLHSEDEVVMVLWFKESDGDQPLYSYDIRGRSQSQPKLWSSPTVFANRAFFRGTATPAVLMLDNVMATDAGVYRCRVDFKNSPTRNLKVNFTVIMPPNRPTIFDAKRRDRTKLVEPYNEGANVLLICEVEGGNPRPRVTWYLENTVIDDSFEQRPDGVTVNTLTFPNVGRQHLNARLVCQASNTNLAPPETKVLILDINLKPISVTILTKEKQISADKRYEVECKTTGSRPEAYVTWWKNNRQLKRMAKNFSENNETLSVLSLVPGVEDDGKYLACRAENKHIPDSAIEDKWRLNVHYVPIVDLKMGSNLNPDEIKEGDDVYFECTVKANPKTHRLVWFHDNSEIYHNEAAGVILSAQSLVLQSVTRAAAGDYTCMAANSEGKGTSNPVTLLVRYAPVCAERRDGELFGALKHETVSLHCSVDANPALVSFHWTFNNSGEQTEIPPRLYSSHGHTSTLNYTPTTDMEYGTLACFGENTVGQQKVPCLFQLVAAGRPFPLQNCTVANQSIDSLYVECVENFDGGLPQTFLMELLELPSLAVRYNVSTNRTPPYFEIKGLPPGVSYRIELYAVNAKGRSDVSTIETVTLKGQAKFTGESNALGMSPVLASIAASSALLAAAVCGVLAVLYKKHSNRQRRLPAKHAPLSESMYVERTPNCPTPVKQEVESRASSTEPRDQRSERGARGALLHTSDPMADDADPDIIPCLYERRPVSNGYMSLQRPPSSTKIAKMSGDDIRSEPDGGAYYNDYRKKDYKIPLTSSYHSLGRANKGVTACSPGSATGVTSSLTQHRLRPEVVTTSHRVQESCI

Uniprot

A0A2H1WJ89   A0A194PPB3   A0A212FI98   A0A194RK28   A0A1Y1NKS5   A0A2J7PYN3   + More
D6WPK9   W5JRL3   A0A182QRL9   A0A067RCL4   A0A0A9ZBH5   A0A1W4WRT9   A0A1W4WQT7   A0A0L7LS03   A0A1W4WFY8   A0A0K8T359   A0A1Y9IRW5   A0A182HKS9   A0A182Y570   A0A182P2F8   A0A182IS29   A0A182L937   A0A1I8PBW5   A0A0L0BY62   B4M6A4   A0A0Q9W1D8   E0VML7   A0A1S4GCH1   A0A1B6C6V9   A0A1W7R8R5   A0A1B6G259   A0A1I8NIL5   A0A0A1WVT0   A0A1B6LB71   A0A3B0KV58   B3LX91   A0A0M5JCQ5   A0A0K8WMB4   Q297Q6   A0A0K8U830   A0A1W4V371   Q16ZD1   A0A1W4V3H8   A0A0R3NN42   B4G2W0   A0A034W9N8   A0A1W4UR97   W8B9C8   B4JI81   A0A336M9R3   B4KAA3   Q9VFU7   B4R186   B3P448   B4PQF3   B4NKE4   B4HFS3   C0PTV4   Q7PXI0   B0WA44   A0A1A9Z0I0   A0A194PPP2   A0A1B0FRC6   A0A194RJS5   A0A3L8E1Y0   A0A158NPB4   A0A0L7QTN9   A0A0N0U2L6   A0A182FA48   A0A154P3M9   E2A238   A0A088A033   A0A2A4JRL1   A0A195CH45   A0A0C9S347   A0A195CG75   A0A158NCQ7   A0A3L8D7Y1   A0A195F8Y1   A0A0N0BJ70   A0A232FK68   A0A026WSM2   A0A088AIN7   A0A151IA00   A0A0J7L4J4   A0A3L8E1M6   A0A026WV55   F4WF94   E2C984   A0A195DTC2  

Pubmed

26354079    22118469    28004739    18362917    19820115    20920257    + More
23761445    24845553    25401762    26823975    26227816    25244985    20966253    26108605    17994087    18057021    20566863    12364791    25315136    25830018    15632085    23185243    17510324    25348373    24495485    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    30249741    21347285    20798317    28648823    24508170    21719571   

EMBL

ODYU01008707    SOQ52514.1    KQ459596    KPI95281.1    AGBW02008416    OWR53449.1    + More
KQ460118    KPJ17690.1    GEZM01002471    JAV97235.1    NEVH01020344    PNF21422.1    KQ971354    EFA06826.2    ADMH02000629    ETN65555.1    AXCN02001176    KK852551    KDR21492.1    GBHO01002348    GDHC01008300    JAG41256.1    JAQ10329.1    JTDY01000215    KOB78250.1    GBRD01006221    JAG59600.1    APCN01000864    JRES01001160    KNC24967.1    CH940652    EDW59180.1    KRF78739.1    KRF78740.1    KRF78738.1    DS235315    EEB14623.1    AAAB01008987    GEDC01028050    JAS09248.1    GEHC01000109    JAV47536.1    GECZ01013250    JAS56519.1    GBXI01011571    JAD02721.1    GEBQ01019020    JAT20957.1    OUUW01000013    SPP87858.1    CH902617    EDV41691.1    KPU79296.1    KPU79297.1    KPU79299.1    CP012526    ALC47181.1    GDHF01028633    GDHF01000289    JAI23681.1    JAI52025.1    CM000070    EAL28149.2    KRT00494.1    KRT00495.1    KRT00497.1    GDHF01029500    JAI22814.1    CH477492    EAT40016.1    KRT00496.1    CH479179    EDW24155.1    GAKP01006691    JAC52261.1    GAMC01011313    JAB95242.1    CH916369    EDV92962.1    UFQT01000721    SSX26760.1    CH933806    EDW14590.1    KRG01093.1    KRG01094.1    AE014297    AAF54952.3    AFH06404.1    CM000364    EDX13063.1    CH954181    EDV49222.1    CM000160    EDW97249.1    KRK03606.1    CH964272    EDW84074.1    CH480815    EDW42308.1    BT071799    ACN43735.2    EAA01081.5    DS231868    EDS40777.1    KPI95282.1    CCAG010005698    CCAG010005699    KPJ17689.1    QOIP01000001    RLU26636.1    ADTU01022145    ADTU01022146    ADTU01022147    ADTU01022148    ADTU01022149    ADTU01022150    ADTU01022151    ADTU01022152    KQ414740    KOC62013.1    KQ436043    KOX67494.1    KQ434809    KZC06457.1    GL435917    EFN72486.1    NWSH01000804    PCG74103.1    KQ977791    KYM99751.1    GBYB01015336    JAG85103.1    KYM99745.1    ADTU01012031    ADTU01012032    ADTU01012033    ADTU01012034    ADTU01012035    ADTU01012036    QOIP01000011    RLU16384.1    KQ981727    KYN36898.1    KQ435719    KOX78734.1    NNAY01000092    OXU31062.1    KK107111    EZA59032.1    KQ978252    KYM95902.1    LBMM01000823    KMQ97414.1    RLU26631.1    KK107087    EZA59930.1    GL888115    EGI67145.1    GL453802    EFN75491.1    KQ980419    KYN16096.1   

Proteomes

UP000053268    UP000007151    UP000053240    UP000235965    UP000007266    UP000000673    + More
UP000075886    UP000027135    UP000192223    UP000037510    UP000075903    UP000075840    UP000076408    UP000075885    UP000075880    UP000075882    UP000095300    UP000037069    UP000008792    UP000009046    UP000095301    UP000268350    UP000007801    UP000092553    UP000001819    UP000192221    UP000008820    UP000008744    UP000001070    UP000009192    UP000000803    UP000000304    UP000008711    UP000002282    UP000007798    UP000001292    UP000007062    UP000002320    UP000092445    UP000092444    UP000279307    UP000005205    UP000053825    UP000053105    UP000069272    UP000076502    UP000000311    UP000005203    UP000218220    UP000078542    UP000078541    UP000215335    UP000053097    UP000036403    UP000007755    UP000008237    UP000078492   

PRIDE

Q9VFU7    C0PTV4   

Pfam

PF07686   V-set        + More
PF08205   C2-set_2
PF07679   I-set
PF00047   ig
PF00041   fn3

Interpro

IPR003598   Ig_sub2        + More
IPR036179   Ig-like_dom_sf       
IPR013106   Ig_V-set       
IPR036116   FN3_sf       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR003961   FN3_dom       
IPR013783   Ig-like_fold       
IPR013162   CD80_C2-set       
IPR013098   Ig_I-set       
IPR013151   Immunoglobulin       
IPR009072   Histone-fold       

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265       
SSF47113   SSF47113       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

A0A2H1WJ89   A0A194PPB3   A0A212FI98   A0A194RK28   A0A1Y1NKS5   A0A2J7PYN3   + More
D6WPK9   W5JRL3   A0A182QRL9   A0A067RCL4   A0A0A9ZBH5   A0A1W4WRT9   A0A1W4WQT7   A0A0L7LS03   A0A1W4WFY8   A0A0K8T359   A0A1Y9IRW5   A0A182HKS9   A0A182Y570   A0A182P2F8   A0A182IS29   A0A182L937   A0A1I8PBW5   A0A0L0BY62   B4M6A4   A0A0Q9W1D8   E0VML7   A0A1S4GCH1   A0A1B6C6V9   A0A1W7R8R5   A0A1B6G259   A0A1I8NIL5   A0A0A1WVT0   A0A1B6LB71   A0A3B0KV58   B3LX91   A0A0M5JCQ5   A0A0K8WMB4   Q297Q6   A0A0K8U830   A0A1W4V371   Q16ZD1   A0A1W4V3H8   A0A0R3NN42   B4G2W0   A0A034W9N8   A0A1W4UR97   W8B9C8   B4JI81   A0A336M9R3   B4KAA3   Q9VFU7   B4R186   B3P448   B4PQF3   B4NKE4   B4HFS3   C0PTV4   Q7PXI0   B0WA44   A0A1A9Z0I0   A0A194PPP2   A0A1B0FRC6   A0A194RJS5   A0A3L8E1Y0   A0A158NPB4   A0A0L7QTN9   A0A0N0U2L6   A0A182FA48   A0A154P3M9   E2A238   A0A088A033   A0A2A4JRL1   A0A195CH45   A0A0C9S347   A0A195CG75   A0A158NCQ7   A0A3L8D7Y1   A0A195F8Y1   A0A0N0BJ70   A0A232FK68   A0A026WSM2   A0A088AIN7   A0A151IA00   A0A0J7L4J4   A0A3L8E1M6   A0A026WV55   F4WF94   E2C984   A0A195DTC2  

PDB

5ZO2     E-value=7.09809e-13,     Score=182

KEGG

101743630    no KO assigned | (RefSeq) hemicentin-1-like

GO

GO:0016021   GO:0005515   GO:0006813   GO:0004721   GO:0030145   GO:0043565   GO:0003677   GO:0003707   GO:0006281   GO:0006259  

Length:

850

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.38888

Exp number, first 60 AAs:

0.00081

Total prob of N-in:

0.00186

outside

1  -  646

TMhelix

647  -  669

inside

670  -  850

 

 

Pi

203.593423

Theta

168.778642

Tajima's D

0.738203

CLR

0.136279

CSRT

0.581770911454427

Interpretation

Uncertain