Gene

KWMTBOMO15443

Pre Gene Modal

BGIBMGA004751

Annotation

PREDICTED:_hemicentin-2_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr25(+):13314491-13342382      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.146

CDS

ATGGTAGCAAAACCGATACCTCAAGCTAATAGTGTGGATTTTAGAAACGGTCCATCAGTACATTGGGCTACAGCTGGTGAGTTCGGTGCCAGAACTCACTTTGTGCTAAACGAATCCGATCCATCATCAGCGCACCTGGCGGTCGAGAAGGTCGTCAGATACGATGAGGGGATATACAGATGTAGAATTGACTACGTCGATTCCCCGACCAGGAATTATCGTGTCAATTTAACTGTAATTGTGCCTCCAGAACCACCTCGGTTGTACGATTCCGAGGGGAGGGAGATTCTGGGGAACTTCGCGGGACCTTTCCGGGAAGGACAAAACTTGCTTTTATCGTGTCAAGCGGCTGGAGGTAAACCACCACCAGACGTTTCTTGGTACCAAGGTCCAGATAGACTTGCCTTCACCAGAGAAGGCTCGGTCTGTCAACTTCACATCCCAACTCTGAGCAGGGAGATGTCCGGTGCCAAGTTCCAGTGCAGAGTGGAACCACCTTTACTCGAACCGCAGTTCAGGGATGTTACCATCAAATTGTTTTTGAAACCCCAGTTCGTCAGAGTGACTGGCAGTGGCGCGACCAGAGCTGGCCAGAATCGTTCTTTCGTGTGCACGACACGAGGATCGAAGCCAGCTCCTAACATTGACTGGTTCATCAACTCGCGCCTCGTGGATTCGACTATGACCGAGGTCGAAGTAGATGGTGATGTTACAAAGAGTATTCTAACTTGGCACGTGAGAAGAGAAGACAGCGGTAGACAATTGGTGTGCCGTGTCTCGAATCCATGGTTCCCTGCCTACACCATAGAAGATTCCTTAATGTTTGAGGTTATGTATCCACCAGTATCTCAAATATCTCTGATAGAGCCCAAGGAGCCTCGTTTGCTGCGAGAAGATGAGAACGCTGTGCTTCTTTGCTCTGCTGATGCTTCACCGGCAGCCTACAACTTCACCTTTTACAAAGGTACAGAGGTGTACCAAATCCGAGACGACCCTATAGCAGGGATAGCTGTGGAAGGCGATCGACTTATGCTTCGAGGTTTGAGAAGGCATCATTCAACCGTATACCGCTGTAAGGCTAGGAATTCTGAAGGCAGCGCTTTGAGCGACCCCCTCACACTAAACGTACTAACACGCCCAGAGTGCTCAGCTGGTTCAGTAGTCCAGCAATTAGCGGGAGCTCCTGGAGGAGAAGTGAGAGCAAGGTGTTCTGTTAATGCGCCGTCATCAAGAGACGCTGGCCCTTTGAGGTTTTACTGGACTTATAACGGAACTAAAGATGTTTTACCGGTTCCGGCATCCAATGTAACAGTTATGGGATCCAGCAGTACAGTGATTCACGGTCTGCATGACGATGAAGACGAGGACTTGGGCTGGCTGGCGTGCTGGGCCAGTAACGACATTGGAAACCAGAGAGAACCTTGTCTGTTCAGGATAATGCCTGCTGCTTTGCCTGAGCCGCCAAGTAACTGCGAAGTCACAAACGAAGTCCTCCGTTGTGATGCTGGACACGACGGAGGCCTCTCCCAGCAGTTCCTGTTGGAGGCGCTGGAGGAGGTACGGCCACGCCAACCAACAGTCGACGAGAATGAGATATCAACTATGAACGACCAGGGTATTTCTGGACGCGGTCTCTCCGAAGCCGTCTACAGGTACAGGAATGACAAGCCGCAGTTCTCTCTAGACGCCCTGTCACCTGGTCGGTATACATTCCTGATCTATGCTGAGACTCCTCGAGGCAGGTCTCCCAGGCCGGCCGCGTTGAGAAGCGTGTCAATTCGAACTGTTGAAGATCTGGACAGACCGGGTTCTCTGCAAACAATGACACCCGGTCCTCCCTCTCCGCCTGCCCAGACTGACAACAGCGTCGCATTATTAGTAGGTGCAGCACTTTCATTGGTACTGCTGACCATATTGACGACACTTTGTGTTGCTCTTGTCGTGATGTGTAAGAAGAAAAATCGACCGCGGCGTGGTGCTGAACCAGATACAATATCGCGTCGCAACATCGGCGTTTCAATGTATGGAGCCTCAACCATATCTCCGAGTATAGTGCCCACGGTGGTGGTGAGAGGACATAGAGGTTCCAGGGTATTAGCAGCCAGGTGGTCTGGAGTACTAGACGATGCTCCACTCGCAGTCCTAGCCTTGGATACTAGACCTCATGATAGTGATTCGAGTCGGAGCGATGAAGATCATCATGAAACATCATTGACAAGGCATATAGACGATACAAGTCAAATAGATACTTGA

Protein

MVAKPIPQANSVDFRNGPSVHWATAGEFGARTHFVLNESDPSSAHLAVEKVVRYDEGIYRCRIDYVDSPTRNYRVNLTVIVPPEPPRLYDSEGREILGNFAGPFREGQNLLLSCQAAGGKPPPDVSWYQGPDRLAFTREGSVCQLHIPTLSREMSGAKFQCRVEPPLLEPQFRDVTIKLFLKPQFVRVTGSGATRAGQNRSFVCTTRGSKPAPNIDWFINSRLVDSTMTEVEVDGDVTKSILTWHVRREDSGRQLVCRVSNPWFPAYTIEDSLMFEVMYPPVSQISLIEPKEPRLLREDENAVLLCSADASPAAYNFTFYKGTEVYQIRDDPIAGIAVEGDRLMLRGLRRHHSTVYRCKARNSEGSALSDPLTLNVLTRPECSAGSVVQQLAGAPGGEVRARCSVNAPSSRDAGPLRFYWTYNGTKDVLPVPASNVTVMGSSSTVIHGLHDDEDEDLGWLACWASNDIGNQREPCLFRIMPAALPEPPSNCEVTNEVLRCDAGHDGGLSQQFLLEALEEVRPRQPTVDENEISTMNDQGISGRGLSEAVYRYRNDKPQFSLDALSPGRYTFLIYAETPRGRSPRPAALRSVSIRTVEDLDRPGSLQTMTPGPPSPPAQTDNSVALLVGAALSLVLLTILTTLCVALVVMCKKKNRPRRGAEPDTISRRNIGVSMYGASTISPSIVPTVVVRGHRGSRVLAARWSGVLDDAPLAVLALDTRPHDSDSSRSDEDHHETSLTRHIDDTSQIDT

Uniprot

A0A3S2NNA0   A0A2H1V7P7   A0A2A4J5M3   A0A212EHQ2   A0A194PRA3   A0A194RIN8   + More
A0A0L7L2I7   A0A1B0CJG6   A0A182L9Y6   E0R977   Q7PUQ1   A0A182NRY8   A0A0M5J6L1   A0A182RUM6   A0A182Y3N7   B4M019   A0A0Q9WQQ7   A0A0Q9WH90   A0A1S4GDB2   A0A2M4ANR5   A0A182WSN5   A0A2C9GPM8   A0A084WBP0   A0A2M4ANA8   B3LXK4   A0A0Q9X694   B7Z0R1   A0A0P8Y006   B4QXG5   Q967X6   A0A0B4K6K0   B4K4K8   Q9VB35   A0A0Q9X1B4   A0A1A9W2L6   A0A0Q9X9J4   A0A0Q9WZI4   A0A0Q9WZZ6   A0A0B4K7N1   A0A0P8YP38   A0A0R1E519   B4PRR3   A0A0R1E529   B3P616   A0A0L0CGY7   A0A1W4UPR5   A0A1W4UCZ2   A0A1B0AHI4   A0A0R1E5E8   A0A0R1E553   A0A1W4UCC7   A0A1W4UPG6   A0A0K8VKL9   A0A0K8ULU1   B0W490   A0A1B0GE06   A0A3B0JIQ8   A0A3B0K4S7   A0A3B0JEU1   A0A182FNE9   A0A0K8UGX9   A0A182VZH7   A0A1A9VM49   A0A3B0JE27   A0A0R3NG46   A0A0R3NFZ4   B4G2K2   Q29A98   A0A0R3NLJ2   A0A2M4CSH1   B4NAP3   A0A0L7R7F3   B4JTE3   A0A1I8PTC2   A0A1I8PTF3   E0VML3   A0A310S8H3   A0A154P5Q3   A0A1Y1LX56   A0A1Y1LZ11   A0A067QMN9   A0A158NT47   A0A151I683   A0A195B6C3   A0A195EZR1   A0A1A9XR32   E9IN14   A0A1B0BBE0   A0A151WJC9   A0A088A032   A0A0K8S8T1   E2AYC5   A0A3L8D925   A0A195EGK0   A0A1B6C275   A0A1B6E1P6   E2BET3   D6WPK5  

Pubmed

22118469    26354079    26227816    20966253    12364791    25244985    + More
17994087    18057021    24438588    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    11301002    17550304    26108605    15632085    23185243    20566863    28004739    24845553    21347285    21282665    26823975    20798317    30249741    18362917    19820115   

EMBL

RSAL01000001    RVE55300.1    ODYU01000868    SOQ36274.1    NWSH01003174    PCG66824.1    + More
AGBW02014823    OWR41016.1    KQ459596    KPI95279.1    KQ460118    KPJ17693.1    JTDY01003384    KOB69640.1    AJWK01014613    AJWK01014614    BT125645    ADN05222.1    AAAB01008987    EAA01217.6    CP012526    ALC45568.1    CH940650    EDW68269.2    KRF83761.1    KRF83762.1    KRF83763.1    GGFK01009100    MBW42421.1    APCN01000905    ATLV01022401    ATLV01022402    ATLV01022403    ATLV01022404    ATLV01022405    KE525332    KFB47634.1    GGFK01008949    MBW42270.1    CH902617    EDV43898.2    CH933806    KRG01306.1    AE014297    ACL83573.1    KPU80526.1    CM000364    EDX14651.1    AF358267    AAK40237.1    AFH06652.1    EDW14984.2    AAF56708.2    KRG01305.1    KRG01308.1    KRG01310.1    KRG01307.1    KRG01309.1    AFH06651.1    KPU80525.1    KPU80527.1    CM000160    KRK04315.1    EDW98506.2    KRK04312.1    CH954182    EDV53416.1    JRES01000409    KNC31505.1    KRK04310.1    KRK04313.1    KRK04314.1    KRK04316.1    KRK04317.1    GDHF01013204    JAI39110.1    GDHF01024793    JAI27521.1    DS231835    EDS32934.1    CCAG010012078    CCAG010012079    OUUW01000005    SPP80623.1    SPP80626.1    SPP80625.1    GDHF01026501    JAI25813.1    SPP80624.1    CM000070    KRT00036.1    KRT00034.1    CH479179    EDW24047.1    EAL27452.4    KRT00033.1    KRT00035.1    GGFL01004085    MBW68263.1    CH964232    EDW80857.2    KQ414643    KOC66691.1    CH916373    EDV95033.1    DS235315    EEB14619.1    KQ764717    OAD54444.1    KQ434809    KZC06460.1    GEZM01048986    JAV76216.1    GEZM01048985    JAV76217.1    KK853146    KDR10718.1    ADTU01025536    KQ978510    KYM93395.1    KQ976579    KYM80056.1    KQ981897    KYN33713.1    GL764272    EFZ18017.1    JXJN01011416    KQ983039    KYQ47946.1    GBRD01016134    GDHC01017417    JAG49692.1    JAQ01212.1    GL443874    EFN61557.1    QOIP01000011    RLU16834.1    KQ978957    KYN27027.1    GEDC01029690    JAS07608.1    GEDC01005453    JAS31845.1    GL447857    EFN85799.1    KQ971354    EFA06824.2   

Proteomes

UP000283053    UP000218220    UP000007151    UP000053268    UP000053240    UP000037510    + More
UP000092461    UP000075882    UP000007062    UP000075884    UP000092553    UP000075900    UP000076408    UP000008792    UP000076407    UP000075840    UP000030765    UP000007801    UP000009192    UP000000803    UP000000304    UP000091820    UP000002282    UP000008711    UP000037069    UP000192221    UP000092445    UP000002320    UP000092444    UP000268350    UP000069272    UP000075920    UP000078200    UP000001819    UP000008744    UP000007798    UP000053825    UP000001070    UP000095300    UP000009046    UP000076502    UP000027135    UP000005205    UP000078542    UP000078540    UP000078541    UP000092443    UP000092460    UP000075809    UP000005203    UP000000311    UP000279307    UP000078492    UP000008237    UP000007266   

PRIDE

E0R977    Q967X6    Q9VB35   

Pfam

PF08205   C2-set_2        + More
PF13895   Ig_2
PF07686   V-set
PF00041   fn3

Interpro

IPR013162   CD80_C2-set        + More
IPR013783   Ig-like_fold       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013106   Ig_V-set       
IPR003961   FN3_dom       
IPR036116   FN3_sf       

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

A0A3S2NNA0   A0A2H1V7P7   A0A2A4J5M3   A0A212EHQ2   A0A194PRA3   A0A194RIN8   + More
A0A0L7L2I7   A0A1B0CJG6   A0A182L9Y6   E0R977   Q7PUQ1   A0A182NRY8   A0A0M5J6L1   A0A182RUM6   A0A182Y3N7   B4M019   A0A0Q9WQQ7   A0A0Q9WH90   A0A1S4GDB2   A0A2M4ANR5   A0A182WSN5   A0A2C9GPM8   A0A084WBP0   A0A2M4ANA8   B3LXK4   A0A0Q9X694   B7Z0R1   A0A0P8Y006   B4QXG5   Q967X6   A0A0B4K6K0   B4K4K8   Q9VB35   A0A0Q9X1B4   A0A1A9W2L6   A0A0Q9X9J4   A0A0Q9WZI4   A0A0Q9WZZ6   A0A0B4K7N1   A0A0P8YP38   A0A0R1E519   B4PRR3   A0A0R1E529   B3P616   A0A0L0CGY7   A0A1W4UPR5   A0A1W4UCZ2   A0A1B0AHI4   A0A0R1E5E8   A0A0R1E553   A0A1W4UCC7   A0A1W4UPG6   A0A0K8VKL9   A0A0K8ULU1   B0W490   A0A1B0GE06   A0A3B0JIQ8   A0A3B0K4S7   A0A3B0JEU1   A0A182FNE9   A0A0K8UGX9   A0A182VZH7   A0A1A9VM49   A0A3B0JE27   A0A0R3NG46   A0A0R3NFZ4   B4G2K2   Q29A98   A0A0R3NLJ2   A0A2M4CSH1   B4NAP3   A0A0L7R7F3   B4JTE3   A0A1I8PTC2   A0A1I8PTF3   E0VML3   A0A310S8H3   A0A154P5Q3   A0A1Y1LX56   A0A1Y1LZ11   A0A067QMN9   A0A158NT47   A0A151I683   A0A195B6C3   A0A195EZR1   A0A1A9XR32   E9IN14   A0A1B0BBE0   A0A151WJC9   A0A088A032   A0A0K8S8T1   E2AYC5   A0A3L8D925   A0A195EGK0   A0A1B6C275   A0A1B6E1P6   E2BET3   D6WPK5  

PDB

4OFY     E-value=8.85971e-11,     Score=164

KEGG

101743773    no KO assigned | (RefSeq) hemicentin-2

GO

GO:0016021   GO:0008045   GO:0005515   GO:0016020   GO:0000287   GO:0004721   GO:0030145   GO:0043565   GO:0003677   GO:0003707   GO:0006281   GO:0006259  

Length:

750

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

29.88544

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00011

outside

1  -  625

TMhelix

626  -  648

inside

649  -  750

 

 

Pi

226.219162

Theta

165.902721

Tajima's D

1.801997

CLR

0.395452

CSRT

0.847357632118394

Interpretation

Uncertain