SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15428  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004743
Annotation
PREDICTED:_protein_phosphatase_1B_[Amyelois_transitella]
Location in the cell
Cytoplasmic   Reliability : 2.945
 

Sequence

CDS
ATGGGGGCGTTTTTAAATAAGCCCGAGACCAAAAAATATAACGAGAGCGGGGAAGGAAACGGTCTTCGCTATGGCGTGGCGTCGATGCAGGGGTGGCGTGTGGAGATGGAGGACGCGCATCACGCGCAGCTCACTCTGAACGGTACACTCTCGGACTGGTCGTACTTCGCCGTGTTTGATGGACATGCGGGAGCTCGGGTCTCCGCACACTGTGCAGAAAATCTTCTTGAATGTATTCTGCAGACGGAGGAGTTTCGGCGTGAAGACATAGCTGAAGCAATCCGTACTGGTTTCCTGGATTTAGATAAAAAAATGAGCGAGCTTCCCGAGCTGTCCAACGGTAAAGAGAAGTCTGGTTCGACGGCCGTGTGTGCTTTCGTTTCTCCCGAACAGATATACATCGCGAACTGCGGCGATTCTCGCGCTGTACTGGCCCGCGGCGGTATTCCGATTTTTGCCACACGAGACCATAAACCTGAGTTACCATCTGAGAAGTCTCGTATTGTCAAAGCTGGCGGTTCAGTCATGATTCAACGCGTCAATGGTAGCTTAGCTGTTTCTCGAGCGCTTGGTGATTATCAGTACAAGAGGCTGTCGAACCGTGGTCCGTGCGAACAACTAGTTTCTCCAGAGCCGGAGGTGTTTCTGCATGAGAGATCAGAAGCAGAAGATGAATTCATGGTATTGGCGTGTGATGGAGTTTGGGATGTCATGAGTAATGATGCACTGTGTGCATATGTGCATTCTTTACTGCAGCTCACTGATGACCTTGTGGCTATCACCAATCAAGTCATTGATACCTGCCTTTATAAGGGAAGCAAAGACAACATGAGTATCGTACTGGTGGTGTTCCCGGCGGCACCCAAACCGAACCCCGAGGCGCAGAAGGCTGACAAGGAGCTGGATGAAACGCTACGACAAAGAGTCACAGCTTTGATCGAGAGTCGCGGCTGCGAGGAGGACTGCGAGGAGTTCTCGTGGGTCCTGAAACAGCTGATGCAGGAGAACATACCTGGTCTGCCGCCAGGTGGAGGTCTGGCCGCCAAACAAGCCCTTCTGGACCAGATATACAGGGAGTTCTATCCGGACCACGTCGACAGTTCGGAGAGGTTCAACTGTGAGGATCTAGCCGATTCTAATTAA
Protein
MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEKSGSTAVCAFVSPEQIYIANCGDSRAVLARGGIPIFATRDHKPELPSEKSRIVKAGGSVMIQRVNGSLAVSRALGDYQYKRLSNRGPCEQLVSPEPEVFLHERSEAEDEFMVLACDGVWDVMSNDALCAYVHSLLQLTDDLVAITNQVIDTCLYKGSKDNMSIVLVVFPAAPKPNPEAQKADKELDETLRQRVTALIESRGCEEDCEEFSWVLKQLMQENIPGLPPGGGLAAKQALLDQIYREFYPDHVDSSERFNCEDLADSN

Summary

Cofactor
Mg(2+)
Similarity
Belongs to the PP2C family.
EMBL
ODYU01001231    SOQ37161.1    NWSH01000383    PCG76808.1    KQ459596    KPI95271.1    + More
BABH01028205    KJ815047    AIJ00864.1    KQ460118    KPJ17702.1    AGBW02009250    OWR51260.1    JTDY01006137    KOB66254.1    KQ767768    OAD53312.1    KQ434904    KZC11184.1    KQ971352    EFA07329.1    GECZ01012915    JAS56854.1    KQ983211    KYQ46599.1    KZ288229    PBC31713.1    JR051475    AEY61506.1    KQ979236    KYN22162.1    GECZ01004655    JAS65114.1    KQ977873    KYM99172.1    GL434534    EFN74814.1    ADTU01011738    ADTU01011739    KQ981727    KYN37142.1    GL449633    EFN82375.1    QOIP01000014    RLU14969.1    KK107061    EZA61338.1    GEDC01005191    JAS32107.1    GEDC01008475    JAS28823.1    GEDC01003246    JAS34052.1    GEDC01010658    JAS26640.1    NEVH01000599    PNF43495.1    GL888463    EGI60643.1    PNF43496.1    KK852577    KDR20920.1    GEZM01013059    JAV92792.1    GEZM01013058    JAV92793.1    GECU01027335    JAS80371.1    KK854118    PTY11593.1    PNF43497.1    PNF43491.1    GBYB01001741    JAG71508.1    GANO01003619    JAB56252.1    GBBI01001853    JAC16859.1    GFTR01005519    JAW10907.1    GBGD01001879    JAC87010.1    ACPB03001702    APGK01034997    KB740923    ENN78131.1    GDKW01001784    JAI54811.1    GBHO01037704    GBHO01037702    GBRD01003899    GDHC01012610    GDHC01010532    JAG05900.1    JAG05902.1    JAG61922.1    JAQ06019.1    JAQ08097.1    CVRI01000021    CRK91514.1    AJWK01025650    UFQT01001272    SSX29798.1    SSX29797.1    SSX29796.1    GFDF01007017    JAV07067.1    GECL01002619    JAP03505.1    JXUM01069613    GAPW01002105    KQ562560    JAC11493.1    KXJ75624.1    DS231890    EDS43813.1    AXCN02000761    CH477269    EAT45385.1    APCN01002465    GFDL01015571    JAV19474.1    GGFK01009717    MBW43038.1    AAAB01008964    EAA12486.3    GGFJ01006773    MBW55914.1    ADMH02001944    ETN60387.1    AXCM01017425    GAKP01017676    GAKP01017667    GAKP01017665    JAC41285.1    GAKP01017680    GAKP01017677    GAKP01017671    GAKP01017669    JAC41283.1    GAKP01017679    GAKP01017678    GAKP01017675    GAKP01017674    GAKP01017673    GAKP01017672    GAKP01017670    GAKP01017668    GAKP01017666    JAC41284.1    PYGN01001074    PSN37840.1    GDHF01031218    GDHF01030552    GDHF01018848    GDHF01009843    GDHF01003827    GDHF01000921    JAI21096.1    JAI21762.1    JAI33466.1    JAI42471.1    JAI48487.1    JAI51393.1    KQ414658    KOC65639.1    GDHF01030890    GDHF01017269    GDHF01008678    GDHF01007812    JAI21424.1    JAI35045.1    JAI43636.1    JAI44502.1    LJIJ01000167    ODN01199.1    CCAG010011181    GBXI01015576    JAC98715.1    EZ423711    ADD19987.1    GDRN01067162    JAI64413.1    GBXI01002105    JAD12187.1    GBXI01015570    JAC98721.1    GDHF01019460    JAI32854.1    KQ976642    KYM78693.1    AB817733    BAO01182.1    GAMC01004505    JAC02051.1    GAMC01004507    GAMC01004506    GAMC01004504    JAC02049.1    GANP01007741    JAB76727.1   
Pfam
PF00481   PP2C        + More
PF07830   PP2C_C
Interpro
IPR000222   PP2C_BS        + More
IPR001932   PPM-type_phosphatase_dom       
IPR036580   PP2C_C_sf       
IPR015655   PP2C       
IPR036457   PPM-type_dom_sf       
IPR012911   PP2C_C       
SUPFAM
SSF81601   SSF81601        + More
SSF81606   SSF81606       
Gene 3D
PDB
1A6Q     E-value=3.61492e-107,     Score=992

Ontologies

Topology

Length:
380
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00034
Exp number, first 60 AAs:
0.00018
Total prob of N-in:
0.00403
outside
1  -  380
 
 

Population Genetic Test Statistics

Pi
221.578637
Theta
188.91255
Tajima's D
0.617274
CLR
1.236474
CSRT
0.542072896355182
Interpretation
Uncertain
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