Gene

KWMTBOMO15426

Pre Gene Modal

BGIBMGA004742

Annotation

PREDICTED:_WD_repeat-containing_protein_20_[Amyelois_transitella]

Location

Bomo_Chr25(+):12868870-12873676      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.098 Nuclear   Reliability : 1.357

CDS

ATGGCTGTGCAATCGGACTCTGGAGGGAAGGACGAAGTAAAGACTCAGTTTGTGACACGCGAAGGGACTTACCGCTTGATGACTTTGTCGGAGTACTCAAGACCAAATCGCGTGGGTTATACCAGCGGGTCGGGGTCTTCGCACGTCCGCGTGTCTCTGGTGTCATTGCCGCCAAGTCCTGGAGTCGGAAACTCGGACTCTCAAAACTCGGACGACAGAATATGTTTCAATCATGGCAAAGAACTCTATGTTTACGTGTACAGAGGTGTCAAAAAGGCAGCTGATCTCACCAAACCTGTAGACAAGAAAATGTACAAAGGAACTAATCCTACATGTCATGATTTCAATACTGTCACAATGACGGCTGATAGTGTATCATTAGTTATAGGATTTTCTACTGGCCAAATACAACTAATAGACCCTATTAAAAAAGAATTAAGTAAATTATACAACGAAGAGAGACTGATAGACAAAAGTCGAGTGACATGTATCAAGTGGGTGCCAGGGTCAAGCAACTTATTCATAGCAGCACATGCGAGTGGACAGCTTTATGTTTACAATGAGGAACTTGGCTGTGGTTCAGGTGCACCACAATACCAGCCTTTCAAGCAAGGCGAAGGCTATGTCATTAGTACCTGTCGGGCCAAGTCAACACGCAACCCACTTTATCGCTGGCTAGTTGGAGATGGATCCTGTGTGAACGAGTTTGCATTTTCCCCTTGCGGGGCCAACCTTGCTGTCGTCTCGCAGGACGGCTTTCTTCGCGTATTTCACTACGACACGATGGAGCTTGTCGGCCGGGCGCGCTCCTACTTCGGTGGATTCCTCTGCGTTTGCTGGTCGCCCGATGGCAAATACGTCGTCGTCGGCGGCGAAGATGATCTCGTCACGGTGTGGGCGCTCGCCGAGAGACGCGTGGTCGCACGCGGCCAGGGACACCGCTCCTGGGTCTCCGTCGTTGCCTTCGATCCGTACGCGGTCGGTTTCGAGGCGGAAGCCGGCGATTCCCATTGCTATCGGCTCGGCAGCGTCTCACAGGACACGCAGCTCTGTCTCTGGGATCTCACCGAAGACGTTCTACGAGCGCGAGGCAGGGCGCCGCTTCCGGCTGCACCAGCCCCTCCCCTCGCCGCTCCAAACGGCACAGTGCCGCGCGCCGAGCCGCAGCGCCGTAAACACAAAGAAGATGCCGGCTCGCTCACGCAGCGGCTCGCCGGCTTCTCGTTCGGCGACCGGCGCGACGCCCGGCGCAGCGACGGACGCGCGGGCGGTGCGGGGGCCGCAGGTGGAGCCGCGGGAGGGGGAGGGGACGCGCTGCGGCTGATGGGCACGGCGGCGTGTCCGCGGTTCGACGAGTGCCCGGTGCTGGAGCCGCTGGTGTGCAAGAAGATAGCGCACGAGCGGCTGACGGCGCTGCTGTTCCGCGCGGAGTACCTGGTGACGGCGTGCGCGGACGGCTGCGTGAACACGTGGGCGCGGCCGCGGCGGGACCGCCCGGAGCGCGACTAG

Protein

MAVQSDSGGKDEVKTQFVTREGTYRLMTLSEYSRPNRVGYTSGSGSSHVRVSLVSLPPSPGVGNSDSQNSDDRICFNHGKELYVYVYRGVKKAADLTKPVDKKMYKGTNPTCHDFNTVTMTADSVSLVIGFSTGQIQLIDPIKKELSKLYNEERLIDKSRVTCIKWVPGSSNLFIAAHASGQLYVYNEELGCGSGAPQYQPFKQGEGYVISTCRAKSTRNPLYRWLVGDGSCVNEFAFSPCGANLAVVSQDGFLRVFHYDTMELVGRARSYFGGFLCVCWSPDGKYVVVGGEDDLVTVWALAERRVVARGQGHRSWVSVVAFDPYAVGFEAEAGDSHCYRLGSVSQDTQLCLWDLTEDVLRARGRAPLPAAPAPPLAAPNGTVPRAEPQRRKHKEDAGSLTQRLAGFSFGDRRDARRSDGRAGGAGAAGGAAGGGGDALRLMGTAACPRFDECPVLEPLVCKKIAHERLTALLFRAEYLVTACADGCVNTWARPRRDRPERD

Uniprot

H9J5F2   A0A2A4JZH3   A0A212FC13   A0A146LHG5   A0A2H1VRP1   A0A3S2NSL8   + More
A0A194RJU1   A0A194PR94   A0A1B6E645   A0A0A9YGX6   A0A067RQ15   A0A2S2R3Q4   A0A023F3K8   E2BA26   E2AXA3   J9K828   A0A232EW79   A0A0L7QXJ9   K7JAL4   A0A026WSK9   A0A2A3E558   A0A087ZZZ0   A0A310SRY8   A0A154P4Z0   A0A0J7KPJ8   A0A2S2PK39   A0A0M9A7D1   A0A195C8L4   F4WG64   A0A158NT43   A0A195EZH8   A0A195EFJ7   A0A3Q0J910   A0A1E1XPE0   A0A0C9RLJ4   E0V927   A0A3Q3RTE3   A0A1S3JGN0   A0A1S3JF63   D6WT27   A0A3Q0SA33   A0A1S3JFX9   A0A1S3JF59   A0A1E1XBH8   A0A131YN69   A0A224Z5J9   V5HSI7   T1IPY7   L7M550   A0A131XCM2   A0A131Y0G5   B7QI02   A0A2R5LLZ4   A0A293MPR9   R7V4A2   A0A1Q3FAI6   W5U6L1   A0A287BE44   A0A2Y9JIZ5   W5N0G5   M3XUJ1   L5LPS7   G3VQN3   A0A2Y9JN22   V9KGF3   M7B4P9   H2ZY95   A0A384BIL3   F7AG41   A0A3Q7X1F4   A0A1A8C0A4   G1MIS7   G1PML0   A0A3B4C8F4   D2HAH7   A0A3B4CAL6   A0A2Y9G8R3   A0A337SCE4   A0A3Q7U4V3   A0A099Z9E6   A0A226PH27   Q3UWE6   A0A1V4KAM4   A0A3Q3A989   A0A218UF69   A0A0A0AY90   A0A3Q7X9L3   A0A2K5J001   A0A340X8Z8   A0A093FYU6   A0A091J3B4   U3JJA6   A0A2U3V8X1   A0A1S3W5D0  

Pubmed

19121390    22118469    26823975    26354079    25401762    24845553    + More
25474469    20798317    28648823    20075255    24508170    30249741    21719571    21347285    29209593    20566863    18362917    19820115    28503490    26830274    28797301    25765539    25576852    28049606    23254933    23127152    21709235    24402279    23624526    9215903    24813606    19892987    20010809    21993624    17975172    24621616    10349636    11042159    11076861    11217851    12466851    12040188    16141073    19144319    19468303    15592404   

EMBL

BABH01028206    BABH01028207    NWSH01000383    PCG76810.1    AGBW02009250    OWR51258.1    + More
GDHC01011660    JAQ06969.1    ODYU01004030    SOQ43489.1    RSAL01000001    RVE55306.1    KQ460118    KPJ17704.1    KQ459596    KPI95269.1    GEDC01003888    JAS33410.1    GBHO01012175    JAG31429.1    KK852498    KDR22685.1    GGMS01015177    MBY84380.1    GBBI01002767    JAC15945.1    GL446664    EFN87435.1    GL443546    EFN61937.1    ABLF02038511    ABLF02038513    ABLF02038530    NNAY01001916    OXU22576.1    KQ414704    KOC63274.1    AAZX01002449    KK107111    QOIP01000011    EZA59035.1    RLU16379.1    KZ288387    PBC26422.1    KQ761039    OAD58334.1    KQ434809    KZC06384.1    LBMM01004665    KMQ92186.1    GGMR01016627    MBY29246.1    KQ435719    KOX78745.1    KQ978205    KYM96463.1    GL888128    EGI66831.1    ADTU01025500    KQ981897    KYN33705.1    KQ978957    KYN27018.1    GFAA01002276    JAU01159.1    GBYB01007816    JAG77583.1    DS234988    EEB09883.1    KQ971354    EFA07158.1    GFAC01002581    JAT96607.1    GEDV01009021    JAP79536.1    GFPF01013369    MAA24515.1    GANP01005521    JAB78947.1    JH431265    GACK01006761    JAA58273.1    GEFH01003892    JAP64689.1    GEFM01003798    JAP71998.1    ABJB011068780    DS942764    EEC18474.1    GGLE01006339    MBY10465.1    GFWV01022940    MAA47667.1    AMQN01005993    KB297336    ELU10635.1    GFDL01010527    JAV24518.1    JT406354    AHH37558.1    AHAT01003706    AHAT01003707    AEYP01037611    AEYP01037612    AEYP01037613    AEYP01037614    AEYP01037615    AEYP01037616    AEYP01037617    KB109558    ELK28096.1    AEFK01015273    AEFK01015274    AEFK01015275    AEFK01015276    AEFK01015277    JW864373    AFO96890.1    KB538352    EMP32876.1    AFYH01218296    AFYH01218297    AFYH01218298    AFYH01218299    AFYH01218300    AFYH01218301    AFYH01218302    AFYH01218303    HADZ01009371    SBP73312.1    ACTA01098238    ACTA01106238    ACTA01114238    ACTA01122238    AAPE02040956    AAPE02040957    AAPE02040958    AAPE02040959    GL192632    EFB29781.1    AANG04004659    KL890350    KGL77648.1    AWGT02000076    OXB78998.1    AL596265    AK136417    CH466549    BAE22969.1    EDL18659.1    LSYS01003973    OPJ81458.1    AADN05000303    MUZQ01000364    OWK52221.1    KL873269    KGL98100.1    KL214832    KFV62008.1    KK501363    KFP14313.1    AGTO01000282   

Proteomes

UP000005204    UP000218220    UP000007151    UP000283053    UP000053240    UP000053268    + More
UP000027135    UP000008237    UP000000311    UP000007819    UP000215335    UP000053825    UP000002358    UP000053097    UP000279307    UP000242457    UP000005203    UP000076502    UP000036403    UP000053105    UP000078542    UP000007755    UP000005205    UP000078541    UP000078492    UP000079169    UP000009046    UP000261640    UP000085678    UP000007266    UP000261340    UP000001555    UP000014760    UP000221080    UP000008227    UP000248482    UP000018468    UP000000715    UP000007648    UP000031443    UP000008672    UP000261680    UP000291021    UP000002281    UP000286642    UP000008912    UP000001074    UP000261440    UP000248481    UP000011712    UP000286640    UP000053641    UP000198419    UP000000589    UP000190648    UP000000539    UP000197619    UP000053858    UP000233080    UP000265300    UP000053875    UP000053119    UP000016665    UP000245320    UP000079721   

PRIDE

H9J5F2   

Pfam

PF00400   WD40        + More
PF12894   ANAPC4_WD40

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR019775   WD40_repeat_CS       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR024977   Apc4_WD40_dom       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9J5F2   A0A2A4JZH3   A0A212FC13   A0A146LHG5   A0A2H1VRP1   A0A3S2NSL8   + More
A0A194RJU1   A0A194PR94   A0A1B6E645   A0A0A9YGX6   A0A067RQ15   A0A2S2R3Q4   A0A023F3K8   E2BA26   E2AXA3   J9K828   A0A232EW79   A0A0L7QXJ9   K7JAL4   A0A026WSK9   A0A2A3E558   A0A087ZZZ0   A0A310SRY8   A0A154P4Z0   A0A0J7KPJ8   A0A2S2PK39   A0A0M9A7D1   A0A195C8L4   F4WG64   A0A158NT43   A0A195EZH8   A0A195EFJ7   A0A3Q0J910   A0A1E1XPE0   A0A0C9RLJ4   E0V927   A0A3Q3RTE3   A0A1S3JGN0   A0A1S3JF63   D6WT27   A0A3Q0SA33   A0A1S3JFX9   A0A1S3JF59   A0A1E1XBH8   A0A131YN69   A0A224Z5J9   V5HSI7   T1IPY7   L7M550   A0A131XCM2   A0A131Y0G5   B7QI02   A0A2R5LLZ4   A0A293MPR9   R7V4A2   A0A1Q3FAI6   W5U6L1   A0A287BE44   A0A2Y9JIZ5   W5N0G5   M3XUJ1   L5LPS7   G3VQN3   A0A2Y9JN22   V9KGF3   M7B4P9   H2ZY95   A0A384BIL3   F7AG41   A0A3Q7X1F4   A0A1A8C0A4   G1MIS7   G1PML0   A0A3B4C8F4   D2HAH7   A0A3B4CAL6   A0A2Y9G8R3   A0A337SCE4   A0A3Q7U4V3   A0A099Z9E6   A0A226PH27   Q3UWE6   A0A1V4KAM4   A0A3Q3A989   A0A218UF69   A0A0A0AY90   A0A3Q7X9L3   A0A2K5J001   A0A340X8Z8   A0A093FYU6   A0A091J3B4   U3JJA6   A0A2U3V8X1   A0A1S3W5D0  

PDB

5K1C     E-value=1.0552e-134,     Score=1231

KEGG

101740859    no KO assigned | (RefSeq) WD repeat-containing protein 20

GO

GO:0005515   GO:0000166   GO:0046872   GO:0005634   GO:0008270   GO:0043565   GO:0003677   GO:0003707   GO:0006281   GO:0006259  

Length:

502

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07234

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00442

outside

1  -  502

 

 

Pi

225.38817

Theta

195.102935

Tajima's D

0.48914

CLR

0.04325

CSRT

0.512774361281936

Interpretation

Uncertain