Gene

KWMTBOMO15425  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004741

Annotation

PREDICTED:_HIV_Tat-specific_factor_1_[Amyelois_transitella]

Location

Bomo_Chr25(+):12866220-12868062      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.278

CDS

ATGGCTAAACTAAATCCAAGAACGGGATTTGTGATCAAACTTTCCGAAGAGACAGTTCAAAAGTTAGCGGAAGAGGAAAAAGAAACAAAAGAAAAATCTACATATAATCAGATAGAGGATACTACATCGGTAGAAGATATTAATAATGACAAAATTCAAAATGTTCAAGATGTGAAAACAACATCACAAACTTTAGATGTACCTACTTCCGATTCCATAGAAAAATCTACTGTAGAAAGTACTCTGCAGAAAGAAAATTCATCACAAACTGAAAAAACAGTTCTGAACATAACTGATGATAAGGGTGAAAATGATAAGGATAATACACTTGAAGATAATGAAAAAACAAAGAAACCCTCCAAATCTATTACTGATTCTAGTACTTGGGGTGAGTATGCATCATACATAACTTACAAAGATAATGAAGCTGTATATACTGACCCCTCATCAGGTCAAGCTTACACTTGGAATAAAACCAGCAATGCTTGGGATGCTAAAGGTGATGAAGCACCTGGTCGTGTTTACAGCTATGAAGATGACACTCATATATACACAGAGGCTGATGGTTCAAAATATTTTTGGGATGAAACCAAGAAGGCTTGGATACCAAAAGTTGATGATGACTTTTTAGCTTATTATCAAATGTCTTATGGATTTATTGAAAATAAGAAAGATGATGATGAGAAAGAGAAAGGTAGTGACAAGAAGAAGGAGTTGCAAAAAGAAGCTATGGCTGTCAAAAGGAAAAGTGAACCGCAGTGGTTTGAACCTACTGATGATAAAAACACCAAAGTTTATGTATCAAACTTACCTCTAGACATGACTGAACAAGAATTTGTGGACTTAATGCAGAAGTGTGGTCTCGTTGAACGAGATCCAAGTAACCAAAAAATGAAAGTTAAATTATACATGGACAAAGAACAAAATTGTTTCAAGGGTGATGCATTATGTACTTATATAAAAATAGAATCCGTAGATTTAGCATTAAAATTGTTGGATGGCAGCGATTGTAAAGGCAATACCATTAAAGTGGAAAGAGCTCAATTTCAACTAAAAGGGGAATACAATCCTGCCCTCAAACCTAAGAAAAGAAGAAAAAAAGAGCTGGAAAAAATTAAAAAAATGAAAGAAAAACTATTTGATTGGAGGCCAGAGAAGTTTATTGGTGAACGTTCTAAACACGAAAGAGTAGTTATTGTTAAAAATTTATTCCACTCTAGTGATTTTGATAAAGAGGTTCAGCTTATTCTGGACTATCAGCAAGATTTGAGGGAAGAATGTGGAAAATGTGGAGACGTTCGGAAAGTAGTGCTCTATGATCGCCATCCTGAAGGAGTGGCACAGATAACTATGAAAGAGCCGGAACAAGCTGATGCTGTTGTTCAGCTGATCAACGGAAGATGGTTTGGCAAAAGACAAATCACTGCAGAGATATGGGATGGCAAAACTAAGTACAAAATTGCTGAAACTGATGCAGACATTAATCAGAGGTTAGATAAATGGGGTAAATTTTTGGAAGAAAAAGAAGATGATAATAAGGTAATTAAATTGCCTGTTGAAGAAAAAGACACAGATGAGCTTAAAGTTGAAGAGGTTTCTATTGAAAAAGAAAATACTCAATACCTATCCGAAAAAAGTGATATAAACAATGTAAAATTAGAAATAAATCAATGA

Protein

MAKLNPRTGFVIKLSEETVQKLAEEEKETKEKSTYNQIEDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDNEAVYTDPSSGQAYTWNKTSNAWDAKGDEAPGRVYSYEDDTHIYTEADGSKYFWDETKKAWIPKVDDDFLAYYQMSYGFIENKKDDDEKEKGSDKKKELQKEAMAVKRKSEPQWFEPTDDKNTKVYVSNLPLDMTEQEFVDLMQKCGLVERDPSNQKMKVKLYMDKEQNCFKGDALCTYIKIESVDLALKLLDGSDCKGNTIKVERAQFQLKGEYNPALKPKKRRKKELEKIKKMKEKLFDWRPEKFIGERSKHERVVIVKNLFHSSDFDKEVQLILDYQQDLREECGKCGDVRKVVLYDRHPEGVAQITMKEPEQADAVVQLINGRWFGKRQITAEIWDGKTKYKIAETDADINQRLDKWGKFLEEKEDDNKVIKLPVEEKDTDELKVEEVSIEKENTQYLSEKSDINNVKLEINQ

Uniprot

H9J5F1   A0A2H1VRL5   A0A212FC14   A0A194RK42   A0A0L7KT78   A0A2A4JXR8   + More
A0A194PQM5   A0A1Y1KY94   A0A1W4WYW9   D7EJG5   A0A0C9RRA1   A0A1Q3G184   A0A1Q3G175   A0A2M4ANZ5   A0A2M4CS54   A0A2M4AM76   A0A2M4AMR7   A0A0P6IUZ6   A0A2M4CTF3   W8B1F8   A0A1B6CZN8   B3NE82   A0A026WQ05   A0A195F576   A0A158NJW1   B4PE28   A0A1W4UWR4   A0A0A1XAC0   A0A0A9XG48   A0A195DV91   A0A0K8SSD9   A0A146LBP2   A0A1A9V3T3   A0A1A9Y0W1   Q2LYN4   A0A3B0JT67   A0A0K8U5W6   A0A0J9S0R5   A0A034VCD8   A0A1A9W771   A0A2A3EMB6   Q7K204   A0A1S4ESR1   A0A088AKE1   B3M8J4   A0A1L8DGF0   A0A1B0B6V4   A0A232F3D2   A0A1J1I7E8   K7JAK9   A0A3B0KNB4   A0A2S2PRV1   B4KWT8   A0A336M4B4   B4IXC1   A0A2H8TT29   A0A1I8PBJ2  

Pubmed

19121390    22118469    26354079    26227816    28004739    18362917    + More
19820115    26999592    24495485    17994087    18057021    24508170    30249741    21347285    17550304    25830018    25401762    26823975    15632085    22936249    25348373    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    28648823    20075255   

EMBL

BABH01028207    ODYU01004030    SOQ43491.1    AGBW02009250    OWR51257.1    KQ460118    + More
KPJ17705.1    JTDY01006137    KOB66256.1    NWSH01000383    PCG76811.1    KQ459596    KPI95268.1    GEZM01072553    JAV65471.1    DS497704    EFA12731.1    GBYB01011070    JAG80837.1    GFDL01001481    JAV33564.1    GFDL01001486    JAV33559.1    GGFK01009156    MBW42477.1    GGFL01003931    MBW68109.1    GGFK01008550    MBW41871.1    GGFK01008577    MBW41898.1    GDUN01000945    JAN94974.1    GGFL01003930    MBW68108.1    GAMC01015702    GAMC01015701    JAB90853.1    GEDC01018371    JAS18927.1    CH954178    EDV52646.1    KQS44367.1    KK107135    QOIP01000006    EZA58058.1    RLU21927.1    KQ981820    KYN35327.1    ADTU01018410    ADTU01018411    ADTU01018412    CM000159    EDW95041.1    KRK02205.1    GBXI01006048    JAD08244.1    GBHO01027544    JAG16060.1    KQ980304    KYN16766.1    GBRD01009745    JAG56079.1    GDHC01017656    GDHC01013530    GDHC01008722    JAQ00973.1    JAQ05099.1    JAQ09907.1    CH379069    EAL29828.2    OUUW01000009    SPP85307.1    GDHF01030270    GDHF01015293    JAI22044.1    JAI37021.1    CM002912    KMZ00995.1    GAKP01017971    JAC40981.1    KZ288217    PBC32422.1    AY061345    AE014296    AAL28893.1    AAN12166.1    AAN12167.1    CH902618    EDV39968.2    GFDF01008670    JAV05414.1    JXJN01009246    JXJN01009247    NNAY01001048    OXU25346.1    CVRI01000043    CRK96099.1    AAZX01002446    AAZX01002448    AAZX01009950    AAZX01015712    AAZX01018407    SPP85308.1    GGMR01019439    MBY32058.1    CH933809    EDW18559.2    UFQT01000381    SSX23779.1    CH916366    EDV97453.1    GFXV01005581    MBW17386.1   

Proteomes

UP000005204    UP000007151    UP000053240    UP000037510    UP000218220    UP000053268    + More
UP000192223    UP000007266    UP000008711    UP000053097    UP000279307    UP000078541    UP000005205    UP000002282    UP000192221    UP000078492    UP000078200    UP000092443    UP000001819    UP000268350    UP000091820    UP000242457    UP000000803    UP000079169    UP000005203    UP000007801    UP000092460    UP000215335    UP000183832    UP000002358    UP000009192    UP000001070    UP000095300   

PRIDE

H9J5F1    Q7K204   

Pfam

PF00076   RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom       
IPR034393   TatSF1-like       
IPR035979   RBD_domain_sf       
IPR034392   TatSF1-like_RRM1       
IPR003954   RRM_dom_euk       
IPR011044   Quino_amine_DH_bsu       

SUPFAM

SSF54928   SSF54928        + More
SSF50969   SSF50969       

Gene 3D

3.30.70.330    

CDD

cd12281  RRM1_TatSF1_like

ProteinModelPortal

H9J5F1   A0A2H1VRL5   A0A212FC14   A0A194RK42   A0A0L7KT78   A0A2A4JXR8   + More
A0A194PQM5   A0A1Y1KY94   A0A1W4WYW9   D7EJG5   A0A0C9RRA1   A0A1Q3G184   A0A1Q3G175   A0A2M4ANZ5   A0A2M4CS54   A0A2M4AM76   A0A2M4AMR7   A0A0P6IUZ6   A0A2M4CTF3   W8B1F8   A0A1B6CZN8   B3NE82   A0A026WQ05   A0A195F576   A0A158NJW1   B4PE28   A0A1W4UWR4   A0A0A1XAC0   A0A0A9XG48   A0A195DV91   A0A0K8SSD9   A0A146LBP2   A0A1A9V3T3   A0A1A9Y0W1   Q2LYN4   A0A3B0JT67   A0A0K8U5W6   A0A0J9S0R5   A0A034VCD8   A0A1A9W771   A0A2A3EMB6   Q7K204   A0A1S4ESR1   A0A088AKE1   B3M8J4   A0A1L8DGF0   A0A1B0B6V4   A0A232F3D2   A0A1J1I7E8   K7JAK9   A0A3B0KNB4   A0A2S2PRV1   B4KWT8   A0A336M4B4   B4IXC1   A0A2H8TT29   A0A1I8PBJ2  

PDB

2DIT     E-value=2.97921e-27,     Score=305

KEGG

101740997    K13093 HIV Tat-specific factor 1 | (RefSeq) HIV Tat-specific factor 1 homolog

GO

GO:0003723   GO:0000398   GO:0004386   GO:0005686   GO:0005684   GO:0003746   GO:0033120   GO:0050767   GO:1990447   GO:0003729   GO:0003676   GO:0000166   GO:0046872   GO:0005634   GO:0008270   GO:0043565   GO:0003677   GO:0003707   GO:0006281   GO:0006259  

PANTHER

PTHR15608  

Length:

557

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00091

outside

1  -  557

 

 

Pi

150.515677

Theta

196.503049

Tajima's D

-0.766382

CLR

34.04941

CSRT

0.185440727963602

Interpretation

Uncertain