Gene

KWMTBOMO15422  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004740

Annotation

PREDICTED:_DNA_damage-binding_protein_1_[Papilio_xuthus]

Location

Bomo_Chr25(+):12828350-12849117      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.837 PlasmaMembrane   Reliability : 1.744

CDS

ATGTCTTACCACTACGTGGTCACAGCCCAAAAACAGACTTCGGTCACAGCATGTGTAACAGGAAACTTCACATCACCAACAGACCTAAATCTACTAGTAGCAAAGGTGTCTCGCCTGGAGATGTACTTGGTCACACCAGAAGGACTTCGCCCCATGAAGGAAGTTGGTTTATATGGAAAAGTTGCAAAGATGAAACTCTTTAGACCACCGTATGAAAATAAAGATCTAGTATTTATTCTAACTGCAAGATACAATGCCATGATATTAGAATGGCGTACAGGTGCAAATGGTGATCTCGAAGTTGTGACACGTGCACATGGTAATGTATCCGATCGAATTGGGAAACCATCAGAGAACGGCATCCTAGTTGTGATAGATCCCCAGGCAAGGGTCATCGGGTTGAGGCTGTATGACGGTCTCTTCAAGATTATACCATTGGAGAAGGACTCAGCAGAGCTGAAGGCTGCCAGCTTGAGGTTAGAAGAATTGAATGTTTACGATGTCGAATTCCTTCATGGATGTGCGAATCCGACATTGATACTGATCCATCAGGATACAAATGGGAGACACATTAAGACACGCGAGATAGGATTAAGAGATAAAGACTTTATAAAAGTATCATGGAAACAGGATAATGTTGAAACTGAAGCATCCATACTCATTCCGGTTCCGAGTCCACTAGGCGGAGCCATAGTTATTGGTCAAGAATCTATAGTGTATCACGACGGTCAGAGCTATGTGGCTGTCGCTCCACCGCAGATCAAGATGACACCTATCAACTGTTACTGCCGCGTGGACAGCCGCGGCCTGCGCTACCTAGCCGGCGACATCGCGGGGAGACTGTTCATGCTGCTGCTGGAGTTACACGAGAAGATGGACGGCACGCAGGCCGTCAAGGACCTCAAGGTCGAGCTCTTAGGCGACATCCCCATCCCGGAGTGCATGACGTACCTGGACAACGGGGTCGTGTTCATCGGCTCCCGGCTGGGCGACTCCGCGCTGGTCCGCCTGTCCAGCTCCCGGGACGACACTCACCAGTACGTGCTGCCCATGGAGACGTTCACCAGCCTCGCGCCCATCGTCGACATGTGCGTCGTGGACCTCGAGCGCCAAGGACAGAGCCAGCTCATCACCTGCTCCGGGGCGTTCAAAATGGGTTCGTTACGGATCATCCGCAACGGGATCGGCATCCAGGAGCAGGCCTCCATCGACCTGCCCGGCATCAAGGGCATGTGGCCCCTCACCCTCGCCCCGGACTCCGCCCACCACGACACCCTGGTGCTGTCCTTTGTCGGACAAACTAGGGTGCTGGCGCTTAATGGCGAAGAAGTCGAAGAGACGGAGATCAAGGGGTTCCTCTCGGACAGACAGACGTTCTTCACAGGCAACGTATGTTACGACCAGCTGATACAGGTGACGGACGAGGGCGTGCGGCTGGCGGGTCGCGCGGGCGCGGGGTGGTGCGTGACGTCACAGTGGCGCGCGCCCGCCGCGCTGTCCGTGGTGGCGTGCGCGCGCAGCCGCCTCGTGTGCGCCGCCGGCCCGCGCCTCTACCTGCTGCTGCTGCACGAAGCCGCCATCGAGCTCAAGGCCGAGGTGTGCATGGAGGAGGAGGTGGCGTGCCTGGACCTGGGCCCCGGCGAGGAGCAGGCGCTGCTGGGCGTGGGGCTGTGGACCGACATCTCCGTGCGCGTGCTGCGCCTGCCCGACATGACGCCGCTGCACACCGAGAAGCTGTACGGAGAGATAATACCGCGGTCGCTCATCATCAGCGTGCTGGAGGGCGTCTGCTACCTGCTGTGCGCGCTGGGGGACGGCTCCATGTTCTACTTCACCGTCGACCAGAAGACCGGAGTGCTGTCCAACAAGAAGAAGGTGACCCTCGGCACCCAGCCCACCGTGCTCAGGACCTTCAGGTCGCTGTCCACGACGAACATATTCGCGTGCTCGGACCGGCCCACCGTGATATTCTCGTCCAACCACAAGCTCGTGTTCTCCAACGTCAACCTCAAGGAGGTCACGCACATGTGCTCGCTCAACGCGCAGGCCTACCCCGACAGCCTGGCGCTGGCCACGGACAGCACGGTGACCATCGGCACCATCGACGAGATCCAGAAGCTGCACATCCGCACCGTGCCGCTGGGGGAGACGCCGCGCAGGATCGCCTACCAGGAGGCCTCGCAGACCTTCGCCGTGATAACGATGCGCGTGGAGAAGCTGGAGTGGGGCGGCGGCGAGGCGGGGCGGGCGCTGGACCACGAGCTGCACAACCTGCTCATACTCGACCACCACACCTTCGAAGTGCTGCACTCGCACCAGCTGATGTCGAGCGAGCTGGCCATGTCGCTGATGTCGTGCCGCCTGGGGGACGACCCCGCGCACTACTACGCCGTGGGGACCGCCATACTCAACCCTGAGGAGCCGGAGCCTAAAAAGGGCAGGATACTGCTGTTCCACTGGTCCGAAGGGAAACTGGTACAAGTAGCCGAAAAGGAAATCAAAGGGGGCTGCTACTCGCTGGTGGAGTTCAACGGCAAGCTACTGGCCGCCATCAACAGCACGGTGCGGCTGTTTGAGTGGACGTCGGACAAGGAGCTGCGGCTGGAGTGCAGTCACTTCAACAACATCGTGGCTCTGTACCTGAAGGCGAAGGGAGACTTCATCCTGGTCGGGGATCTGATGCGCTCCATGTCGCTACTGCAATATAAACAGATGGAGGGCAGCTTCGAGGAGATAGCCCGCGACTACAGCCCCAACTGGATGACGGCCGTGGAGATCCTGGACGACGACACGTTCCTGGGCGCAGAGAACAGCTTCAACCTTTTCGTTTGTCAAAAGGACAGGTGA

Protein

MSYHYVVTAQKQTSVTACVTGNFTSPTDLNLLVAKVSRLEMYLVTPEGLRPMKEVGLYGKVAKMKLFRPPYENKDLVFILTARYNAMILEWRTGANGDLEVVTRAHGNVSDRIGKPSENGILVVIDPQARVIGLRLYDGLFKIIPLEKDSAELKAASLRLEELNVYDVEFLHGCANPTLILIHQDTNGRHIKTREIGLRDKDFIKVSWKQDNVETEASILIPVPSPLGGAIVIGQESIVYHDGQSYVAVAPPQIKMTPINCYCRVDSRGLRYLAGDIAGRLFMLLLELHEKMDGTQAVKDLKVELLGDIPIPECMTYLDNGVVFIGSRLGDSALVRLSSSRDDTHQYVLPMETFTSLAPIVDMCVVDLERQGQSQLITCSGAFKMGSLRIIRNGIGIQEQASIDLPGIKGMWPLTLAPDSAHHDTLVLSFVGQTRVLALNGEEVEETEIKGFLSDRQTFFTGNVCYDQLIQVTDEGVRLAGRAGAGWCVTSQWRAPAALSVVACARSRLVCAAGPRLYLLLLHEAAIELKAEVCMEEEVACLDLGPGEEQALLGVGLWTDISVRVLRLPDMTPLHTEKLYGEIIPRSLIISVLEGVCYLLCALGDGSMFYFTVDQKTGVLSNKKKVTLGTQPTVLRTFRSLSTTNIFACSDRPTVIFSSNHKLVFSNVNLKEVTHMCSLNAQAYPDSLALATDSTVTIGTIDEIQKLHIRTVPLGETPRRIAYQEASQTFAVITMRVEKLEWGGGEAGRALDHELHNLLILDHHTFEVLHSHQLMSSELAMSLMSCRLGDDPAHYYAVGTAILNPEEPEPKKGRILLFHWSEGKLVQVAEKEIKGGCYSLVEFNGKLLAAINSTVRLFEWTSDKELRLECSHFNNIVALYLKAKGDFILVGDLMRSMSLLQYKQMEGSFEEIARDYSPNWMTAVEILDDDTFLGAENSFNLFVCQKDR

Uniprot

A0A2A4JZ82   A0A212FBZ7   A0A3S2LJK0   A0A194PP99   A0A194RJH7   A0A2Z5TRE2   + More
A0A2J7R6I4   A0A067QWW9   A0A1L8DGY1   E9J1W0   H9J5F0   A0A158NJ58   A0A195BL46   A0A195EXY0   A0A151X0H4   F4W766   A0A195C340   A0A026WBL0   A0A151JS91   E2BJY1   A0A0C9RQP9   A0A0L7R1I9   E2A411   A0A232F584   A0A1Y1K0V9   K7IUN5   A0A1B0CUN8   A0A0N0BDG5   A0A2A3EQ74   A0A087ZZR8   A0A154PI86   A0A1W4X581   A0A0J7L6L1   S4PYF2   D6WR91   Q17I86   E0VJ24   Q17I87   U5EVD6   A0A1S4F1P1   A0A336LNQ7   A0A182H165   A0A2M4A7Y9   W5JL18   A0A1J1I7F1   A0A182FT49   A0A1Q3F644   B0X4E5   A0A084WRC6   A0A182XWW1   A0A182NLA8   A0A2H1WKD0   A0A182UN77   A0A182UGX6   A0A182LF28   A0A182XI06   Q7QC66   A0A182HSY7   A0A182VXE5   A0A182JRI8   A0A182MI35   A0A182QID4   A0A182PAF4   A0A1S3IIM7   A0A2M4BAV2   N6UAL4   A0A182JC38   A0A1S3IIX8   E9FU30   A0A182R366   A0A0P5KLL0   A0A0P6GFZ4   A0A0P6FRV4   A0A0P5IFL8   A0A0P5RR17   A0A0P6E5N7   A0A0P5AAI7   V4C8B8   A0A0N7ZL83   A0A0P5LWX0   A0A0P5RXC9   A0A0P6FCL2   C3ZMJ6   A0A060X6D7   A0A2K6L728   A0A2J8LD23   A0A2J8SMZ1   F7HN48   B7Z2A1   F5GY55   C0H989   A0A3P8Z8J6   F6QDR0   V9K9R8   A0A286XPJ3   A0A2K6BUZ0   A0A2K6L717   L5KQI8   A0A2K5VZB4   G3QN74  

Pubmed

22118469    26354079    26760975    24845553    21282665    19121390    + More
21347285    21719571    24508170    30249741    20798317    28648823    28004739    20075255    23622113    18362917    19820115    17510324    20566863    26483478    20920257    23761445    24438588    25244985    20966253    12364791    14747013    17210077    23537049    21292972    23254933    18563158    24755649    17431167    16554811    19413330    21269460    24275569    20433749    25069045    19892987    24402279    21993624    23258410    22398555   

EMBL

NWSH01000383    PCG76813.1    AGBW02009250    OWR51255.1    RSAL01000001    RVE55275.1    + More
KQ459596    KPI95266.1    KQ460118    KPJ17707.1    FX985782    BBA93669.1    NEVH01006756    PNF36443.1    KK853153    KDR10581.1    GFDF01008378    JAV05706.1    GL767674    EFZ13281.1    BABH01028209    BABH01028210    BABH01028211    BABH01028212    ADTU01017499    KQ976453    KYM85435.1    KQ981920    KYN33006.1    KQ982612    KYQ53861.1    GL887813    EGI69950.1    KQ978317    KYM95279.1    KK107293    QOIP01000005    EZA53445.1    RLU22890.1    KQ978579    KYN30011.1    GL448708    EFN83990.1    GBYB01010825    JAG80592.1    KQ414667    KOC64712.1    GL436519    EFN71863.1    NNAY01000904    OXU25996.1    GEZM01096134    JAV55134.1    AAZX01002644    AJWK01029466    KQ435863    KOX70388.1    KZ288194    PBC33915.1    KQ434905    KZC11204.1    LBMM01000453    KMQ98301.1    GAIX01003393    JAA89167.1    KQ971354    EFA07036.1    CH477241    EAT46412.1    DS235219    EEB13380.1    EAT46411.1    GANO01001076    JAB58795.1    UFQT01000097    SSX19784.1    JXUM01102798    JXUM01102799    JXUM01102800    JXUM01102801    KQ564753    KXJ71791.1    GGFK01003593    MBW36914.1    ADMH02001133    ETN63993.1    CVRI01000040    CRK94878.1    GFDL01012001    JAV23044.1    DS232338    EDS40298.1    ATLV01026020    KE525405    KFB52770.1    ODYU01009236    SOQ53509.1    AAAB01008859    EAA08181.2    APCN01000376    AXCM01000492    AXCN02000116    GGFJ01001025    MBW50166.1    APGK01036456    APGK01036457    APGK01036458    KB740940    ENN77681.1    GL732524    EFX89472.1    GDIQ01182249    JAK69476.1    GDIQ01044145    JAN50592.1    GDIQ01145109    GDIQ01061387    GDIQ01034995    JAN33350.1    GDIQ01214033    JAK37692.1    GDIQ01106321    JAL45405.1    GDIQ01068640    JAN26097.1    GDIP01202767    GDIP01030642    JAJ20635.1    KB201304    ESO97964.1    GDIP01234473    GDIQ01110570    JAI88928.1    JAL41156.1    GDIQ01174390    JAK77335.1    GDIQ01095023    JAL56703.1    GDIQ01058842    JAN35895.1    GG666646    EEN46206.1    FR904832    CDQ72425.1    NBAG03000297    PNI45173.1    NDHI03003558    PNJ22128.1    JSUE03012183    JSUE03012184    AK294493    BAH11787.1    AP003037    AP003108    BT058895    ACN10608.1    JW862087    AFO94604.1    AAKN02045307    KB030625    ELK13480.1    AQIA01020060    AQIA01020061    AQIA01020062    AQIA01020063    CABD030079450    CABD030079451    CABD030079452   

Proteomes

UP000218220    UP000007151    UP000283053    UP000053268    UP000053240    UP000235965    + More
UP000027135    UP000005204    UP000005205    UP000078540    UP000078541    UP000075809    UP000007755    UP000078542    UP000053097    UP000279307    UP000078492    UP000008237    UP000053825    UP000000311    UP000215335    UP000002358    UP000092461    UP000053105    UP000242457    UP000005203    UP000076502    UP000192223    UP000036403    UP000007266    UP000008820    UP000009046    UP000069940    UP000249989    UP000000673    UP000183832    UP000069272    UP000002320    UP000030765    UP000076408    UP000075884    UP000075903    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000075920    UP000075881    UP000075883    UP000075886    UP000075885    UP000085678    UP000019118    UP000075880    UP000000305    UP000075900    UP000030746    UP000001554    UP000193380    UP000233180    UP000006718    UP000005640    UP000087266    UP000265140    UP000002281    UP000005447    UP000233120    UP000010552    UP000233100    UP000001519   

PRIDE

H9J5F0    B7Z2A1    F5GY55   

Pfam

PF03178   CPSF_A        + More
PF13520   AA_permease_2
PF00025   Arf

Interpro

IPR031297   DDB1        + More
IPR004871   Cleavage/polyA-sp_fac_asu_C       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR002293   AA/rel_permease1       
IPR006689   Small_GTPase_ARF/SAR       
IPR027417   P-loop_NTPase       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF52540   SSF52540       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A2A4JZ82   A0A212FBZ7   A0A3S2LJK0   A0A194PP99   A0A194RJH7   A0A2Z5TRE2   + More
A0A2J7R6I4   A0A067QWW9   A0A1L8DGY1   E9J1W0   H9J5F0   A0A158NJ58   A0A195BL46   A0A195EXY0   A0A151X0H4   F4W766   A0A195C340   A0A026WBL0   A0A151JS91   E2BJY1   A0A0C9RQP9   A0A0L7R1I9   E2A411   A0A232F584   A0A1Y1K0V9   K7IUN5   A0A1B0CUN8   A0A0N0BDG5   A0A2A3EQ74   A0A087ZZR8   A0A154PI86   A0A1W4X581   A0A0J7L6L1   S4PYF2   D6WR91   Q17I86   E0VJ24   Q17I87   U5EVD6   A0A1S4F1P1   A0A336LNQ7   A0A182H165   A0A2M4A7Y9   W5JL18   A0A1J1I7F1   A0A182FT49   A0A1Q3F644   B0X4E5   A0A084WRC6   A0A182XWW1   A0A182NLA8   A0A2H1WKD0   A0A182UN77   A0A182UGX6   A0A182LF28   A0A182XI06   Q7QC66   A0A182HSY7   A0A182VXE5   A0A182JRI8   A0A182MI35   A0A182QID4   A0A182PAF4   A0A1S3IIM7   A0A2M4BAV2   N6UAL4   A0A182JC38   A0A1S3IIX8   E9FU30   A0A182R366   A0A0P5KLL0   A0A0P6GFZ4   A0A0P6FRV4   A0A0P5IFL8   A0A0P5RR17   A0A0P6E5N7   A0A0P5AAI7   V4C8B8   A0A0N7ZL83   A0A0P5LWX0   A0A0P5RXC9   A0A0P6FCL2   C3ZMJ6   A0A060X6D7   A0A2K6L728   A0A2J8LD23   A0A2J8SMZ1   F7HN48   B7Z2A1   F5GY55   C0H989   A0A3P8Z8J6   F6QDR0   V9K9R8   A0A286XPJ3   A0A2K6BUZ0   A0A2K6L717   L5KQI8   A0A2K5VZB4   G3QN74  

PDB

4A0B     E-value=0,     Score=3316

KEGG

101741287    K10610 DNA damage-binding protein 1 | (RefSeq) DNA damage-binding protein 1

GO

GO:0006281   GO:0003676   GO:0005634   GO:0003684   GO:0043161   GO:0022857   GO:0016021   GO:0005525   GO:0071987   GO:1902188   GO:0043066   GO:0070914   GO:0005654   GO:0005737   GO:0031464   GO:0035518   GO:0016055   GO:0042752   GO:0031465   GO:0045722   GO:0045070   GO:1901990   GO:0097602   GO:0046726   GO:0030674   GO:0045732   GO:0044877   GO:0051702   GO:0003700   GO:0008270   GO:0043565   GO:0003677   GO:0003707   GO:0006259   GO:0005515  

PANTHER

PTHR10644:SF3  

Length:

948

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.128230000000001

Exp number, first 60 AAs:

0.03685

Total prob of N-in:

0.00279

outside

1  -  948

 

 

Pi

216.508393

Theta

173.694665

Tajima's D

0.259856

CLR

1135.433459

CSRT

0.44312784360782

Interpretation

Uncertain