Gene

KWMTBOMO15413

Pre Gene Modal

BGIBMGA004778

Annotation

PREDICTED:_hemicentin-2-like_[Amyelois_transitella]

Location

Bomo_Chr25(-):12225252-12268636      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.234 Nuclear   Reliability : 1.099

CDS

ATGAAATCATTGTGGATTAAGAGAGCGCTTATACGAAGAGCTTACAAAGCACATGCGGGCCGGATAACTGACGTTTCCGGTCTTGAACCGGACGTCGGAGCGATCGTTGCCGTGTTCGGACACAATGAGACAATGGACGCACTGAATTTGTGCAAGATTATTTGGTCTCTTTTCGAGAACGCTAAAGCTGGTGGTAGGACCTCTTTACCGATGACGCAAGTGGTGGCGGTGTCTGGAGAGCCAGTGTACTTACCCTGCGACATCGCGACCCAAGACGAAGAAGATGCGGTTCTACTTGTTCTGTGGTACAGGGAAGATCTGGGCACGCCTATATACAGCGTGGATGCCAGGGAACGAGATTTTGGAGTAGCAGAGCGGTGGTCTGACGAGAGTGTATTTGCGTCCAGAGCCTATTTCCTGCCAGAGAGAAGGCCCGCTGAACTCGGCGTGGACCGCGTCAGGGCTACAGACCAAGGAGTTTATAGATGTAGAGTAGACTTCAAACAAGCCCAAACTAGGAATTCAAGAGTGAATCTCACTGTTATTGTGCCGCCTACTAAAATGGTAATCACGGACGACAAAGGTGATATCAAGCAGGCTATTGTGGGACCATACATCGAAGGAGATACGTTTTCACTTACATGTGACGTCACCGGAGCACGACCTCGACCGTGGGTGAAGTGGTACAGAGACGAGGTAGAAACCGACACACCAGCTTCTCCGCTATCCGGGAATGGAGTTCGAGGAGTTCTCAGGGTAGGACCACTTACGAGAGCAGATGTAAGAGCAGCCTTCACCTGCCGCGCGTCCAATCATCCAAGAGCGCATCCCGTTGAAACAACTCTCACTTTAGATATGAATTTTCCTCCACTAACAGTCCACATACTGGGCTCCAATCAACCGCTCTCGGCGAGCAGAAGATATGACCTGCTTTGTCAAAGTTCGGGATCCAGGCCACCCGCTTCTATTACCTGGTGGAAAAACGGACAAAGAATCAACAACGCCAAAGAAACGCTGTCAACGGATGGCAACACGACGACTTCTACAGTGTCCTTGCAACTGACCAAAGCAGATGCTGGAGCCAAGTTAGCCTGCAGGGCGTCCAATCCCCAAATGCCTTCTGTTCCACCGTTGGAAGATGACTGGATGTTGGATATACAGTATGTTCCCGAAACAGTAGTACGGTTAGGCACAAATTTAGATCCCAAGAACATTCGAGAAGGATCTGACGTCTATTTCGATTGCGTTATCAACGCACACCCTTATGTCTACAAAGTGGAATGGAGACACAATGGAAAGCCACTGGTCCACAACGTAGGTCACGGAATCATCATCAGCAATCAATCCCTGGTTCTCCAAGGCGTAGGAAGACGTACTGCTGGCAACTACACCTGCGTCGGCTTCAATGCTGAAGGAGACGGAGAGAGCAAGCCGTTCTCATTGGATGTGTTATATGCGCCAACCTGCCGAAGTTCACAGCAAAGGGTTCATGGAGTGGCGAAGCAAGAACGCGCCCACATAACCTGTCACGTCGATGCGAACCCACCTGAAGTCACTTTCCGGTGGACCTTCAACAACACAGCCAACAGCAACGAGGTCAGCGACTCCTACGTGTCCCGCGCCGGTACCAGCTCCACCGTGACCTATACTCCTCACACCGAAATGGACTACGGGACCCTGCTTTGCTGGGCCCACAACAGGATCGGGAAGCAACGAGTGCCCTGCGTCTACCATATCATTGCTGCCGGCCGACCCGACCAAGTCCACAACTGCACGGTGGTGAACGCATCATTAACCTCGTTCGGGGTTCGATGCTCGGAGGGCTTTAACGGCGGCCTCCCGCAATCCTTCCTGTTGGAAGTCCGGGAAATCATTACCCAGGAAATCGTCGCGAACGTTTCAAGCGCGGTACCACGTTTCACTGCGGTCGGTCTCGCGCCCGGCAGGACATATGCCGCAGCTATTTTAGCTTATAACGCTAAGGGGAGGGGAGATCCTTACCCTTTACGAGCGAGCACGCTGCGGCCGCCAGAAAAGCATCACGTGCATGACAAAAGCTTAGATCTACCAAGAACAGCCTTCCAAATGTCAGGAGCAATGTCCGCCGCTGTGGGCGGTGGCGGAATCATCATGGTCATTCTGGTGATCTTCATGATTGGCGTGAAGCATCGTTGCGCAAAACGCAAGCCTAGGTCTGCTGCTCCACAATCACAGCCAGCGTCCCCGGACAAACTCAGAGAGAAGGACGACAGTGAGAGTGACGACAGGAACCCTGATATAATACCCTCGGATACAGATCAGATGCAGGTCAGATCCCGTCAGCTGTAG

Protein

MKSLWIKRALIRRAYKAHAGRITDVSGLEPDVGAIVAVFGHNETMDALNLCKIIWSLFENAKAGGRTSLPMTQVVAVSGEPVYLPCDIATQDEEDAVLLVLWYREDLGTPIYSVDARERDFGVAERWSDESVFASRAYFLPERRPAELGVDRVRATDQGVYRCRVDFKQAQTRNSRVNLTVIVPPTKMVITDDKGDIKQAIVGPYIEGDTFSLTCDVTGARPRPWVKWYRDEVETDTPASPLSGNGVRGVLRVGPLTRADVRAAFTCRASNHPRAHPVETTLTLDMNFPPLTVHILGSNQPLSASRRYDLLCQSSGSRPPASITWWKNGQRINNAKETLSTDGNTTTSTVSLQLTKADAGAKLACRASNPQMPSVPPLEDDWMLDIQYVPETVVRLGTNLDPKNIREGSDVYFDCVINAHPYVYKVEWRHNGKPLVHNVGHGIIISNQSLVLQGVGRRTAGNYTCVGFNAEGDGESKPFSLDVLYAPTCRSSQQRVHGVAKQERAHITCHVDANPPEVTFRWTFNNTANSNEVSDSYVSRAGTSSTVTYTPHTEMDYGTLLCWAHNRIGKQRVPCVYHIIAAGRPDQVHNCTVVNASLTSFGVRCSEGFNGGLPQSFLLEVREIITQEIVANVSSAVPRFTAVGLAPGRTYAAAILAYNAKGRGDPYPLRASTLRPPEKHHVHDKSLDLPRTAFQMSGAMSAAVGGGGIIMVILVIFMIGVKHRCAKRKPRSAAPQSQPASPDKLREKDDSESDDRNPDIIPSDTDQMQVRSRQL

Uniprot

A0A2A4JGR1   A0A2H1VMJ8   A0A212FFM9   A0A0N0PCL5   A0A194PP96   A0A3S2PLY8   + More
H9J5I8   A0A2W1BEF9   A0A139WFI9   A0A088A620   E0VJ38   A0A1J1HNF9   A0A0L7R1X5   A0A026X112   A0A3L8DTT2   Q7PQM9   A0A195FL54   B4NK06   B4MC90   B4K4E9   A0A0C9Q6Z6   A0A0M4EK38   A0A1I8PI45   B4JHQ1   B4QVZ5   B4HJU6   B3NZL6   Q9VH85   A0A1W4VNC5   B3MX72   C0PTX7   B4PVD6   A0A084W1E0   Q297F2   A0A0R3NHR5   B4GE51   A0A1B0B2K5   A0A1A9YT03   A0A3B0JLS5   A0A1A9VFU7   K7IQI4   A0A154P3R1   A0A1A9WYL9   A0A1W4WI94   A0A034WS57   A0A1B0FI65   A0A0A1X4T6   A0A1B0B3B5   A0A1A9ZZ50   A0A182UU64   A0A182L750   W8BB58   A0A182Y5E7   W8BP57   A0A182QDJ6   A0A182U5Z9   A0A0A1X8H1   A0A1B6E423   A0A195CUH2   A0A067RMJ2   A0A195BZ09   A0A151J259   A0A3L8DGW7   A0A195F1E7   A0A158P3L9   A0A139WE76   A0A151XG26   E0VML7   E2ACM9   A0A139WEJ5   A0A139WEC1   E2BXP7   A0A2J7PYN3   A0A0K8T359   A0A0A9ZBH5   A0A232F923   K7IUU9   A0A0A9ZA85   A0A1B6G259   A0A1B6M7V2   A0A1W4WET1   A0A087ZQ76   A0A1B6KUS5   A0A1B6C6V9   A0A154P457   A0A067RCL4   A0A1Y1NKS5   A0A088AEQ8   A0A1B6LB71   A0A1D2N2L6   A0A0A9VR67   A0A0P5CLM1   E0VYF5  

Pubmed

22118469    26354079    19121390    28756777    18362917    19820115    + More
20566863    24508170    30249741    12364791    17994087    18057021    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    24438588    15632085    20075255    25348373    25830018    20966253    24495485    25244985    24845553    21347285    20798317    25401762    26823975    28648823    28004739    27289101   

EMBL

NWSH01001524    PCG70966.1    ODYU01003381    SOQ42065.1    AGBW02008799    OWR52538.1    + More
KQ460499    KPJ14272.1    KQ459596    KPI95261.1    RSAL01000001    RVE55268.1    BABH01028276    BABH01028277    BABH01028278    BABH01028279    BABH01028280    BABH01028281    KZ150345    PZC71286.1    KQ971352    KYB26611.1    DS235219    EEB13394.1    CVRI01000012    CRK89491.1    KQ414667    KOC64862.1    KK107036    EZA61977.1    QOIP01000004    RLU23791.1    AAAB01008880    EAA08599.5    KQ981491    KYN40997.1    CH964272    EDW84008.1    CH940657    EDW63172.2    CH933806    EDW13901.2    KRG00693.1    GBYB01009903    JAG79670.1    CP012526    ALC45415.1    CH916369    EDV93890.1    CM000364    EDX13575.1    CH480815    EDW42830.1    CH954181    EDV49726.1    AE014297    AY069137    AAF54434.2    AAL39282.1    CH902629    EDV35295.1    BT071822    ACN58585.1    CM000160    EDW96709.1    KRK03312.1    ATLV01019300    ATLV01019301    ATLV01019302    ATLV01019303    ATLV01019304    ATLV01019305    KE525267    KFB44034.1    CM000070    EAL28253.3    KRT00600.1    CH479182    EDW33886.1    JXJN01007683    OUUW01000007    SPP83264.1    KQ434809    KZC06575.1    GAKP01001805    JAC57147.1    CCAG010001331    GBXI01008421    JAD05871.1    JXJN01007807    GAMC01008100    JAB98455.1    GAMC01008102    JAB98453.1    AXCN02001569    GBXI01007324    JAD06968.1    GEDC01004618    JAS32680.1    KQ977304    KYN03789.1    KK852577    KDR20918.1    KQ976394    KYM93153.1    KQ980493    KYN15817.1    QOIP01000008    RLU19690.1    KQ981880    KYN33924.1    ADTU01008247    ADTU01008248    ADTU01008249    ADTU01008250    ADTU01008251    ADTU01008252    ADTU01008253    ADTU01008254    ADTU01008255    KQ971354    KYB26260.1    KQ982174    KYQ59329.1    DS235315    EEB14623.1    GL438568    EFN68773.1    KYB26261.1    KYB26262.1    GL451287    EFN79530.1    NEVH01020344    PNF21422.1    GBRD01006221    JAG59600.1    GBHO01002348    GDHC01008300    JAG41256.1    JAQ10329.1    NNAY01000656    OXU27155.1    AAZX01006278    AAZX01014466    GBHO01004899    GBRD01005769    GDHC01012855    JAG38705.1    JAG60052.1    JAQ05774.1    GECZ01013250    JAS56519.1    GEBQ01007979    JAT31998.1    GEBQ01024973    JAT15004.1    GEDC01028050    JAS09248.1    KZC06612.1    KK852551    KDR21492.1    GEZM01002471    JAV97235.1    GEBQ01019020    JAT20957.1    LJIJ01000278    ODM99480.1    GBHO01044687    JAF98916.1    GDIP01173916    JAJ49486.1    DS235845    EEB18411.1   

Proteomes

UP000218220    UP000007151    UP000053240    UP000053268    UP000283053    UP000005204    + More
UP000007266    UP000005203    UP000009046    UP000183832    UP000053825    UP000053097    UP000279307    UP000007062    UP000078541    UP000007798    UP000008792    UP000009192    UP000092553    UP000095300    UP000001070    UP000000304    UP000001292    UP000008711    UP000000803    UP000192221    UP000007801    UP000002282    UP000030765    UP000001819    UP000008744    UP000092460    UP000092443    UP000268350    UP000078200    UP000002358    UP000076502    UP000091820    UP000192223    UP000092444    UP000092445    UP000075903    UP000075882    UP000076408    UP000075886    UP000075902    UP000078542    UP000027135    UP000078540    UP000078492    UP000005205    UP000075809    UP000000311    UP000008237    UP000235965    UP000215335    UP000094527   

PRIDE

H9J5I8    Q9VH85    C0PTX7   

Pfam

PF08205   C2-set_2        + More
PF07686   V-set
PF13895   Ig_2
PF00041   fn3
PF07679   I-set
PF00047   ig

Interpro

IPR036179   Ig-like_dom_sf        + More
IPR036116   FN3_sf       
IPR003598   Ig_sub2       
IPR013106   Ig_V-set       
IPR013162   CD80_C2-set       
IPR013783   Ig-like_fold       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR003961   FN3_dom       
IPR013098   Ig_I-set       
IPR013151   Immunoglobulin       

SUPFAM

SSF49265   SSF49265        + More
SSF48726   SSF48726       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

A0A2A4JGR1   A0A2H1VMJ8   A0A212FFM9   A0A0N0PCL5   A0A194PP96   A0A3S2PLY8   + More
H9J5I8   A0A2W1BEF9   A0A139WFI9   A0A088A620   E0VJ38   A0A1J1HNF9   A0A0L7R1X5   A0A026X112   A0A3L8DTT2   Q7PQM9   A0A195FL54   B4NK06   B4MC90   B4K4E9   A0A0C9Q6Z6   A0A0M4EK38   A0A1I8PI45   B4JHQ1   B4QVZ5   B4HJU6   B3NZL6   Q9VH85   A0A1W4VNC5   B3MX72   C0PTX7   B4PVD6   A0A084W1E0   Q297F2   A0A0R3NHR5   B4GE51   A0A1B0B2K5   A0A1A9YT03   A0A3B0JLS5   A0A1A9VFU7   K7IQI4   A0A154P3R1   A0A1A9WYL9   A0A1W4WI94   A0A034WS57   A0A1B0FI65   A0A0A1X4T6   A0A1B0B3B5   A0A1A9ZZ50   A0A182UU64   A0A182L750   W8BB58   A0A182Y5E7   W8BP57   A0A182QDJ6   A0A182U5Z9   A0A0A1X8H1   A0A1B6E423   A0A195CUH2   A0A067RMJ2   A0A195BZ09   A0A151J259   A0A3L8DGW7   A0A195F1E7   A0A158P3L9   A0A139WE76   A0A151XG26   E0VML7   E2ACM9   A0A139WEJ5   A0A139WEC1   E2BXP7   A0A2J7PYN3   A0A0K8T359   A0A0A9ZBH5   A0A232F923   K7IUU9   A0A0A9ZA85   A0A1B6G259   A0A1B6M7V2   A0A1W4WET1   A0A087ZQ76   A0A1B6KUS5   A0A1B6C6V9   A0A154P457   A0A067RCL4   A0A1Y1NKS5   A0A088AEQ8   A0A1B6LB71   A0A1D2N2L6   A0A0A9VR67   A0A0P5CLM1   E0VYF5  

PDB

4OFY     E-value=1.27471e-11,     Score=171

KEGG

101744929    no KO assigned | (RefSeq) hemicentin-2

GO

GO:0016021   GO:0005515   GO:0043401   GO:0003700   GO:0005634   GO:0008270   GO:0043565   GO:0003677   GO:0003707   GO:0006281   GO:0006259  

Length:

775

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.6701

Exp number, first 60 AAs:

0.01269

Total prob of N-in:

0.00072

outside

1  -  698

TMhelix

699  -  721

inside

722  -  775

 

 

Pi

214.36929

Theta

157.696621

Tajima's D

1.394372

CLR

0.574364

CSRT

0.764761761911904

Interpretation

Uncertain