Gene

KWMTBOMO15412

Annotation

T18197_reverse_transcriptase-like_protein_-_silkworm

Location

Bomo_Chr25(-):12196100-12201986      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.527 Nuclear   Reliability : 1.651

CDS

ATGGGACCTGAAGCCTCTGGCCTCCCGCTGGAGTCAGAGAGGACAGGTGATAACCCGACTGTGCGGGGTTCCGCCGGCGCAGATCCTGTGGGTCAGGATGCGCCTGGTTGGACCTGCCAGTTCTGCGAACGATCCTTTTCGACCAACAGGGGCTTGGGTGTCCACAAGCGTAGAGCCCACCCTGTTGAGACCAATACGGATGCCGCTCCGATGATGGTGAAGCGGCGGTGGCATGGCGAGGAAGTCGACCTCCTCGCTCGCACCGAGGCCAGGTTGCTCGCTGAGCGGGGTCAGTGCTCGGGTGGAGACCTCTTTGGCGCGCTTCCAGGGTTTGGAAGAACTCTGGAAGCGATTAAGGGACAACGGCGGAGGGAGCCTTATCGGGCATTGGTGCAAGCGCACCTTGCCCGATTTGGTTCCCAGCCGGGTCCCTCGTCAGGGGGGTGCTCGGCCGAGCCTGACTTCCGGCGGGCTTCTGGAGCTGAGGAAGCGGGCGAGGAACGATGCGCCGAAGACGCCGCTGCCTATGATCCATCCGCAGTCGGTCAGATGTCGCCCGATGCCGCTCGGGTTCTCTCCGAACTCCTTGAGGGTGCGGGGAGAAGACGAGCATGCAGGGCTATGAGACCCAAGACTGCAGGGCGGCGAAACGATTTGCACGATGATCGGACAGCTAGTGCCCACAAAACCAGTAGACAAAAGCGCAGAGCAGAGTACGCGCGTGTGCAGGAACTGTACAAGAAGTGTCGCAGCAGAGCAGCAGCTGAGGTGATCGATGGCGCGTGTGGGGGTGTCGGACACTCGCTCGAGGAGATGGAGACCTATTGGCGACCTATCCTCGAGAGAGTGTCCGATGCACCTGGGCCTACACCGGAAGCTCTTCACGCCCTAGGGCGTGCGGAGTGGCACGGGGGCAATCGCGACTACACCCAGCTGTGGAAGCCGATCTCGGTGGAAGAGATCAAGGCCTCCCGCTTTGACTGGCGAACTTCGCCGGGCCCGGACGGTATACGTTCGGGTCAGTGGCGTGCGGTTCCTGTGCACTTGAAGGCGGAAATGTTCAATGCATGGATGGCACGAGGCGAAATACCCGAAATTCTACGGCAGTGCCGAACCGTCTTTGTGCCTAAGGTGGAGAGACCAGGTGGACCGGGGGAATATCGACCGATCTCGGTCGCGTCGATTCCCCTGAGACACTTTCACTCCATCTTGGCCCGGAGGCTGTTGGCTTGCTGCCCCCCTGATGCACGACAGCGCGGATTTATCTGCGCCGACGGTACGCTGGAGAATTCCGCAGTACTGGACGTGGTGCTTGGGGATAGCAGGAAGAAGCTGCGGGAATGTCACGTGGCGGTGCTAGACTTCGCCAAGGCATTTGACACAGTGTCTCACGAGGCACTTGTCGAATTGCTGAGGTTGAGGGGCATGCCCGAACAGTTCTGCGGCTACATTGCTCACCTATACGATACGGCGTCCACCACCTTAGCCGTGAACAATGAAATGAGCAGCCCTGTAAAAGTGGGACGAGGGGTTCGTCAAGGGGACCCTCTGTCGCCGATACTCTTCAACGTGGTGATGGACCTCATCCTGGCTTCCCTGCCGGAGAGGGTCGGGTATAGGTTGGAGATGGAACTCGTGTCCGCTCTGGCCTATGCTGACGACCTAGTCCTGCTTGCGGGGTCGAAGGTAGGGATGCAGGAGTCCATCTCTGCTGTGGACTGTGTCGGTAGGCAGATGGGCCTACGCCTGAATTGCAGGAAAAGCGCGGTTCTGTCTATGATACCGGATGGCCACCGCAAGAAGCATCACTACCTGACTGAGCGAACCTTCAATATTGGAGGTAAGCCGCTCAGGCAGGTGAGTTGTGTTGAGCGGTGGCGATATCTTGGTGTCGATTTTGAGGCCTCTGGATGCGTGACATTAGAGCATAGTATCAGTAGTGCTCTGAATAATATCTCAAGGGCACCTCTCAAACCCCAACAGAGGTTGGAGATTTTGAGAGCTCATCTGATTCCGAGGTTCCAGCACGGTTTTGTGCTTGGAAACATCTCGGATGACCGATTGAGAATGCTCGATGTCCAAATCCGGAAAGCAGTCGGACAGTGGCTAAGGCTACCGGCGGATGTGCCCAAGGCATACTATCACGCCGCAGTTCAGGACGGCGGCTTAGCGATCCCATCGGTGCGAGCGACCATCCCGGACCTCATTGTGAGGCGTTTCGGGGGGCTCGACTCGTCACCATGGTAA

Protein

MGPEASGLPLESERTGDNPTVRGSAGADPVGQDAPGWTCQFCERSFSTNRGLGVHKRRAHPVETNTDAAPMMVKRRWHGEEVDLLARTEARLLAERGQCSGGDLFGALPGFGRTLEAIKGQRRREPYRALVQAHLARFGSQPGPSSGGCSAEPDFRRASGAEEAGEERCAEDAAAYDPSAVGQMSPDAARVLSELLEGAGRRRACRAMRPKTAGRRNDLHDDRTASAHKTSRQKRRAEYARVQELYKKCRSRAAAEVIDGACGGVGHSLEEMETYWRPILERVSDAPGPTPEALHALGRAEWHGGNRDYTQLWKPISVEEIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMARGEIPEILRQCRTVFVPKVERPGGPGEYRPISVASIPLRHFHSILARRLLACCPPDARQRGFICADGTLENSAVLDVVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGMQESISAVDCVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPW

Uniprot

V9H052   Q8MY64   Q5K671   A0A0J7KIJ3   K7JR53   A0A336N1I0   + More
B8Y0J4   K7JCX5   A0A139W9T2   A0A131Z2I9   A0A146KWA5   Q76IP0   A0A1Z5LEY2   A0A293LBM6   A0A293LGQ3   A0A293LU33   A0A1E1XIZ0   Q76IN9   A0A183A234   I7BCK2   A0A3R7HBS5   A0A183NB95   A0A3B5M253   A0A075A624   Q4QQD8   A0A3Q2Y7G9   A0A3B4CI67   A0A3B4CL88   A0A1V1H6Q5   A0A2Z5WP53   Q76IN8   A0A0V0T642   A0A0V1C720   A0A146T677   B3DJB3  

Pubmed

2439905    14999096    20075255    19350401    18362917    19820115    + More
26830274    26823975    12949131    28528879    28503490    22564473    15939396    27662593   

EMBL

M16558    AAB59214.1    AB076841    BAC01114.1    AF436853    AAQ04479.1    + More
LBMM01007077    KMQ90064.1    AAZX01002322    UFQS01003262    UFQT01003262    SSX15424.1    SSX34793.1    FJ461304    ACJ71597.1    AAZX01010802    AAZX01015897    KQ971997    KYB24671.1    GEDV01003881    JAP84676.1    GDHC01017848    JAQ00781.1    AB097122    BAC82590.1    GFJQ02001120    JAW05850.1    GFWV01001114    MAA25844.1    GFWV01002964    MAA27694.1    GFWV01007503    MAA32233.1    GFAC01000014    JAT99174.1    AB097123    BAC82591.1    UZAN01004728    VDP32110.1    JN937618    AFO19997.1    NIRI01000032    RJW73696.1    UZAI01021487    VDP55649.1    KL596651    KER31070.1    BN000800    CAJ00246.1    LC155026    BAX24488.1    LC349444    BBC20536.1    AB097124    BAC82592.1    JYDJ01000560    KRX34481.1    JYDI01000477    KRY44798.1    GCES01097919    JAQ88403.1    BC163422    AAI63422.1   

Proteomes

UP000036403    UP000002358    UP000007266    UP000050740    UP000050790    UP000277204    + More
UP000261380    UP000264820    UP000261440    UP000055048    UP000054653   

PRIDE

V9H052    Q8MY64    Q5K671   

Pfam

PF00078   RVT_1        + More
PF00096   zf-C2H2
PF08356   EF_assoc_2
PF08355   EF_assoc_1
PF00071   Ras
PF13202   EF-hand_5
PF00249   Myb_DNA-binding

Interpro

IPR013087   Znf_C2H2_type        + More
IPR000477   RT_dom       
IPR036236   Znf_C2H2_sf       
IPR001005   SANT/Myb       
IPR013567   EF_hand_assoc_2       
IPR018247   EF_Hand_1_Ca_BS       
IPR020860   MIRO_dom       
IPR013566   EF_hand_assoc_1       
IPR027417   P-loop_NTPase       
IPR001806   Small_GTPase       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR017930   Myb_dom       

SUPFAM

SSF57667   SSF57667        + More
SSF52540   SSF52540       
SSF47473   SSF47473       

CDD

cd00167  SANT

ProteinModelPortal

V9H052   Q8MY64   Q5K671   A0A0J7KIJ3   K7JR53   A0A336N1I0   + More
B8Y0J4   K7JCX5   A0A139W9T2   A0A131Z2I9   A0A146KWA5   Q76IP0   A0A1Z5LEY2   A0A293LBM6   A0A293LGQ3   A0A293LU33   A0A1E1XIZ0   Q76IN9   A0A183A234   I7BCK2   A0A3R7HBS5   A0A183NB95   A0A3B5M253   A0A075A624   Q4QQD8   A0A3Q2Y7G9   A0A3B4CI67   A0A3B4CL88   A0A1V1H6Q5   A0A2Z5WP53   Q76IN8   A0A0V0T642   A0A0V1C720   A0A146T677   B3DJB3  

KEGG

102466437    no KO assigned | (RefSeq) Mir3342, bmo-mir-3342; microRNA 3342

GO

GO:0003964   GO:0003676   GO:0016021   GO:0003924   GO:0005509   GO:0005525   GO:0046872   GO:0043401   GO:0003700   GO:0005634   GO:0008270   GO:0043565   GO:0003677   GO:0003707   GO:0006281   GO:0006259  

Length:

748

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00311

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00001

outside

1  -  748

 

 

Pi

115.722051

Theta

145.729088

Tajima's D

1.881249

CLR

0.498334

CSRT

0.864956752162392

Interpretation

Uncertain