SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15406  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004889
Annotation
PREDICTED:_zinc_transporter_7_[Papilio_machaon]
Location in the cell
PlasmaMembrane   Reliability : 3.486
 

Sequence

CDS
ATGTTACCACTTATACAGAAGGATACACGGCCGTCCCGTGGTCCCATCTCCGGGATTAAAGAAAAGTTTCAAAATTGGCTCCGGTTAATTTATTCCGATAAGAATTCAAGGAATTTATTCCTTTTCTTATTACTAAATTTATCATTTGCCTTCGTAGAGCTCTTTTATGGAGTATGGACAAACAGCTTAGGTCTTATATCAGATGCATTCCATATGTTTTTCGACTGCACGGGTCTGGTTGCCGGGTTGGCAGCTTCACTGGTATCAAAATGGAGGTCTAACGAAAGATTCTCTTATGGTTATGCAAGAGCTGAAGTACTAGCTGGATTTGTTAATGGATTATTTCTTTTGTTTATTGCATTCTTCATTATGAGCGAAGCTGTTGAGAGAGCTATAGAGCCACCAGAGGTAAAACATGAGCGTTTGCTGGTTGTATCGGTGCTCGGATTCCTCGTGAACCTGGTGGGCATATACGCGTTCCACCACGGTCATGGACACGGCCATGGTCACTCCCACGGCGGGCACGGACATTCGCACAACCACCACGGGCATTCGCACGACGACGAAGTGCACACCGGTGCGGGTTCGGCCATCATGAGAGGGGTGTTCCTTCACGTTCTGGCCGACACCCTCGGCTCCGTCGGCGTCATAGTGTCCGCCATCCTCATGCAGACGTTCGGATGGATGCGAGCCGATCCGATCTGTTCAATGGCAATCGCGCTTCTGATCGCCGCGAGTGTCATACCCCTAGTGCGGGACTCGGCCGGGGTGCTCATGCAACGGACTCCGACCTCTCTGGAGCGCGCGTTGCCCAGTCTCTACACGCGCGTCGTGGGCCTGGCCGGCGTGCATGCTGTCCAGGAACCGCACTTTTGGACTCTTTGCAGTGAAATTCACGTTGGTGCCATGAAGCTCGAGGTGGCCCGCGAGGTGGACCCCCGATACGTGACGGACCAGGTCGCGAGGATCTTCAGGGAAGCCGGCGTCAAACATCTCACCGTACAACTAGACTATTCTCCCCTTTGA
Protein
MLPLIQKDTRPSRGPISGIKEKFQNWLRLIYSDKNSRNLFLFLLLNLSFAFVELFYGVWTNSLGLISDAFHMFFDCTGLVAGLAASLVSKWRSNERFSYGYARAEVLAGFVNGLFLLFIAFFIMSEAVERAIEPPEVKHERLLVVSVLGFLVNLVGIYAFHHGHGHGHGHSHGGHGHSHNHHGHSHDDEVHTGAGSAIMRGVFLHVLADTLGSVGVIVSAILMQTFGWMRADPICSMAIALLIAASVIPLVRDSAGVLMQRTPTSLERALPSLYTRVVGLAGVHAVQEPHFWTLCSEIHVGAMKLEVAREVDPRYVTDQVARIFREAGVKHLTVQLDYSPL

Summary

EMBL
BABH01039880    BABH01039881    KQ460973    KPJ10086.1    KZ150138    PZC72965.1    + More
NWSH01000346    PCG77224.1    KQ459324    KPJ01519.1    AGBW02000323    OWR55790.1    JTDY01000450    KOB77122.1    GAIX01000734    JAA91826.1    GEZM01024250    JAV87831.1    KQ971352    EFA07321.2    GFDF01009204    JAV04880.1    GFDF01009169    JAV04915.1    GFDF01009168    JAV04916.1    GEBQ01010518    JAT29459.1    GECZ01029190    JAS40579.1    AJWK01015970    LJIG01000883    KRT86057.1    APGK01035088    KB740923    KB632326    ENN78166.1    ERL92450.1    NEVH01022633    PNF18816.1    GDAI01001427    JAI16176.1    KK854555    PTY16820.1    CH477186    EAT48944.1    UFQS01000043    UFQT01000043    SSW98372.1    SSX18758.1    GFTR01005323    JAW11103.1    CVRI01000050    CRK99456.1    GBBI01001206    JAC17506.1    GECL01002967    JAP03157.1    KZ288194    PBC33867.1    GDKW01000193    JAI56402.1    ACPB03024117    GAHY01000524    JAA76986.1    KQ435848    KOX71076.1    GEDC01022579    GEDC01011066    GEDC01010428    JAS14719.1    JAS26232.1    JAS26870.1    KK852586    KDR20797.1    CH954181    EDV49554.1    GL449694    EFN82220.1    GL435917    EFN72519.1    KQ976396    KYM93029.1    IAAA01041599    LAA10569.1    KK107364    QOIP01000007    EZA51958.1    RLU20454.1    ADTU01012000    KQ981727    KYN36932.1    GBHO01016877    GBHO01016876    GDHC01005743    JAG26727.1    JAG26728.1    JAQ12886.1    GFWV01010401    MAA35130.1    KK113305    KFM59856.1    KQ434809    KZC06202.1    KQ977791    KYM99706.1    KB202283    ESO91197.1    LBMM01001041    KMQ97033.1    GFJQ02000087    JAW06883.1    KQ978691    KYN29247.1    GL764129    EFZ18415.1    GBRD01010642    JAG55182.1    GL888115    EGI67177.1    IAAA01041600    LAA10571.1    KQ414667    KOC64662.1    KQ982215    KYQ58949.1    GGLE01005970    MBY10096.1    LSYS01005497    OPJ77251.1    AKHW03006584    KYO19526.1    LNIX01000022    OXA43397.1    HACA01006781    CDW24142.1    NEDP02001046    OWF54437.1    IACF01002362    LAB68018.1    REGN01009179    RNA01757.1    GECU01004041    JAT03666.1    KK852875    KDR14532.1    LSMT01000237    PFX22512.1    JH431958    JH818386    EKC39478.1    HADZ01016270    SBP80211.1    HADZ01000945    SBP64886.1    GCES01006612    JAR79711.1    GFJQ02007991    JAV98978.1    MCFE01000481    ORX89045.1    KL893829    KGL81266.1    GGLE01006461    MBY10587.1    GFWV01018670    MAA43398.1    GACK01000793    JAA64241.1    GEDV01004099    JAP84458.1    GFPF01013568    MAA24714.1   
Pfam
PF01545   Cation_efflux
Interpro
IPR027469   Cation_efflux_TMD_sf        + More
IPR002524   Cation_efflux       
SUPFAM
SSF161111   SSF161111       
Gene 3D
PDB
2QFI     E-value=0.000712036,     Score=101

Ontologies

Topology

Length:
341
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
125.47331
Exp number, first 60 AAs:
22.07666
Total prob of N-in:
0.99615
POSSIBLE N-term signal
sequence
inside
1  -  37
TMhelix
38  -  60
outside
61  -  69
TMhelix
70  -  89
inside
90  -  105
TMhelix
106  -  128
outside
129  -  142
TMhelix
143  -  160
inside
161  -  201
TMhelix
202  -  224
outside
225  -  233
TMhelix
234  -  251
inside
252  -  341
 
 

Population Genetic Test Statistics

Pi
3.805498
Theta
139.148879
Tajima's D
-1.654769
CLR
1635.743687
CSRT
0.0431978401079946
Interpretation
Possibly Positive selection
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