Gene

KWMTBOMO15405  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004892

Annotation

TIA-1_homologue_[Bombyx_mori]

Location

Bomo_Chr25(-):11794587-11805267      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.828

CDS

ATGGGCGACGAAAGCCACCCGAAAACTCTCTACGTCGGTAATTTGGACCCGAGTGTCACAGAAGTTTTCCTATGTACGTTGTTTGGTCAAATAGGCGATGTAAAAGGTTGCAAGATTATACGGGAGCCAGGAAATGACCCGTATGCATTTCTCGAGTTTACGTGTCACACGGCGGCGGCCACAGCGCTGGCCGCCATGAACAAGCGAGTGGTCCTCGACAAGGAAATGAAGGTTAATTGGGCGACGAGTCCTGGTAACCAGCCGAAGACGGACACTAGTAATCATCATCACATATTCGTGGGCGATCTGTCTCCAGAAATCGAAACAAACATACTCCGAGAGGCCTTCGCTCCATTTGGTGAGATATCGAACTGTCGCATAGTACGCGATCCTCAAACGCTCAAATCCAAGGGTTATGCTTTTGTATCATTTGTAAAGAAAGCAGATGCCGAAGCTGCCATCCAGGCAATGAATGGCCAGTGGCTGGGATCAAGATCCATACGTACGAACTGGTCAACGCGTAAACCACCAGCGAAGGGTGTGAATGAAGGCGCGCCCAGTAGTAAGAGAGCAAAACAGCCAACATTTGACGAAGTTTATAATCAAAGCTCACCGACAAACACCACAGTTTACTGTGGCGGTTTCACAAGCAACATTATTACTGAAGAGTTAATGCAGAACACATTCTCACAATTTGGTCAGATACAGGACATCAGAGTTTTCAGAGATAAGGGCTATGCATTCATTAGGTTTACTACAAAGGAAGCTGCAGCACATGCCATAGAAGCTACACACAATACAGAAATAAGCGGTCACACAGTCAAATGTTTCTGGGGGAAAGAGAATGGAGGTGCTGAAAACCAGGTTCGACACACGGCAGACTCGAACAGCACGGTCCCAGATCAGAGCGGGAACAACTCGTCGGCGGCGCCTCCAGCGATGGGCGGCCAGTCCCAATATCCTTACCCGTATCAGCAAGGAATGGGCTATTGGTATGCTCAGGGTTACCCTGCGTTACAGGGCTACATGGCTCCCGGGTACTACCAGCAGTACGCGGCCGCGTACAGCAACCCTCAGGCCGCCGCGGCAGCGGGGTACCGCATGGGAATGGGCGGTAATGGCGGCGGCGGCGCCGGGTGGGGCGGCCCCTCGCAACCCCTCATGTACGCGTCGGCCGCCATGCCCTCCGCGCAGTACCCCTCCCAGTAG

Protein

MGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHTAAATALAAMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRDKGYAFIRFTTKEAAAHAIEATHNTEISGHTVKCFWGKENGGAENQVRHTADSNSTVPDQSGNNSSAAPPAMGGQSQYPYPYQQGMGYWYAQGYPALQGYMAPGYYQQYAAAYSNPQAAAAAGYRMGMGGNGGGGAGWGGPSQPLMYASAAMPSAQYPSQ

Uniprot

C8KHM3   C8KHM2   Q0N2S1   H9J5V2   Q76KD3   A0A2W1BH06   + More
A0A194Q7M0   A0A2H1WI71   C0SQ69   A0A3S2P282   A0A2A4JYY1   A0A212FQ18   A0A0N0PB93   C5NMH3   A0A0L7LP39   D6WSZ4   V5I9A6   A0A1Y1KBA5   S4NJ30   A0A0T6AXQ7   J3JYC2   A0A2P8XNW9   A0A1B0GMD7   A0A1L8DH14   A0A1L8DHD0   A0A1B6D785   A0A2J7Q259   A0A1B0CMT7   A0A1B6IIL9   A0A1B6LRL7   A0A1B6GDF4   A0A067QTH3   A0A224XC23   A0A026WSF1   A0A195DVL6   E2AI23   F4W8A5   A0A151I5Z6   A0A195EWU1   A0A158NSN7   A0A151XDV7   A0A224XDP3   A0A310SJP0   A0A084WA20   A0A195CD20   W5JUE3   A0A2M3Z227   A0A182IKZ8   A0A2M4ACE4   A0A0L7R701   A0A182F6J4   A0A2M4BMI5   A0A0J7KPR5   A0A1S4ER17   A0A2A3E6C4   A0A088A059   A0A0N0BE34   A0A182QN73   A0A2A3E5P1   A0A034WU24   A0A232F552   T1HFG1   A0A1Q3F0M3   A0A1B0BJP5   B0X286   A0A1Q3F0K3   U5EX85   A0A0K8V269   W8AS17   W8AGB4   A0A0K8UHD0   A0A0A1XNF5   A0A0A1XLH7   T1PAQ1   A0A1I8MD80   A0A182TIU1   A0A182XEI8   A0A182HTD4   Q175B9   A0A154P4X1   E0VYI5   A0A182LFI5   Q7QBW1   A0A1B0G863   A0A240SX76   A0A0L0CJB3   A0A1A9X1B3   A0A146LK12   A0A182P868   A0A182KH25   A0A1I8P6I4   A0A2H8TUQ6   A0A2S2PKR1   A0A0R3NGZ0  

Pubmed

19121390    14597390    28756777    26354079    19270389    22118469    + More
26227816    18362917    19820115    28004739    23622113    22516182    23537049    29403074    24845553    24508170    30249741    20798317    21719571    21347285    24438588    20920257    23761445    25348373    28648823    24495485    25830018    25315136    17510324    20566863    20966253    12364791    14747013    17210077    26108605    26823975    15632085    17994087   

EMBL

AB461842    BAI40366.1    AB461841    BAI40365.1    DQ646410    ABH10800.1    + More
BABH01039881    BABH01039882    AB092510    BAD00701.1    KZ150138    PZC72964.1    KQ459324    KPJ01518.1    ODYU01008821    SOQ52759.1    AB331732    BAH56564.1    RSAL01000001    RVE55255.1    NWSH01000346    PCG77225.1    AGBW02000323    OWR55789.1    KQ460973    KPJ10085.1    AB331733    BAH84828.1    JTDY01000450    KOB77124.1    KQ971352    EFA06678.1    GALX01003270    JAB65196.1    GEZM01087307    JAV58783.1    GAIX01013844    JAA78716.1    LJIG01022612    KRT79637.1    APGK01055582    BT128248    KB741266    KB632194    AEE63208.1    ENN71538.1    ERL89908.1    PYGN01001626    PSN33700.1    AJVK01024436    AJVK01024437    GFDF01008335    JAV05749.1    GFDF01008299    JAV05785.1    GEDC01015754    JAS21544.1    NEVH01019373    PNF22673.1    AJWK01019157    AJWK01019158    AJWK01019159    AJWK01019160    AJWK01019161    AJWK01019162    GECU01020938    JAS86768.1    GEBQ01013607    JAT26370.1    GECZ01009287    JAS60482.1    KK853291    KDR08866.1    GFTR01006460    JAW09966.1    KK107111    QOIP01000011    EZA58903.1    RLU16972.1    KQ980322    KYN16604.1    GL439621    EFN66931.1    GL887898    EGI69600.1    KQ976400    KYM92669.1    KQ981948    KYN32616.1    ADTU01025080    KQ982275    KYQ58438.1    GFTR01005869    JAW10557.1    KQ764717    OAD54416.1    ATLV01022002    KE525327    KFB47064.1    KQ978023    KYM97978.1    ADMH02000060    ETN67962.1    GGFM01001819    MBW22570.1    GGFK01005132    MBW38453.1    KQ414643    KOC66662.1    GGFJ01005101    MBW54242.1    LBMM01004593    KMQ92261.1    KZ288379    PBC26601.1    KQ435848    KOX70991.1    AXCN02001613    PBC26602.1    GAKP01001111    GAKP01001110    JAC57842.1    NNAY01000955    OXU25742.1    ACPB03024322    GFDL01014007    JAV21038.1    JXJN01015475    DS232283    EDS39109.1    GFDL01014027    JAV21018.1    GANO01000190    JAB59681.1    GDHF01019441    JAI32873.1    GAMC01019182    GAMC01019181    JAB87373.1    GAMC01019183    GAMC01019180    JAB87375.1    GDHF01026998    GDHF01026240    GDHF01025837    GDHF01008509    GDHF01006542    JAI25316.1    JAI26074.1    JAI26477.1    JAI43805.1    JAI45772.1    GBXI01008952    GBXI01002179    JAD05340.1    JAD12113.1    GBXI01002864    JAD11428.1    KA645817    AFP60446.1    CH477403    EAT41668.1    KQ434809    KZC06364.1    DS235845    EEB18441.1    AAAB01008859    EAA07505.5    CCAG010000199    JRES01000321    KNC32307.1    GDHC01010195    JAQ08434.1    GFXV01005736    MBW17541.1    GGMR01017432    MBY30051.1    CM000070    KRT00354.1   

Proteomes

UP000005204    UP000053268    UP000283053    UP000218220    UP000007151    UP000053240    + More
UP000037510    UP000007266    UP000019118    UP000030742    UP000245037    UP000092462    UP000235965    UP000092461    UP000027135    UP000053097    UP000279307    UP000078492    UP000000311    UP000007755    UP000078540    UP000078541    UP000005205    UP000075809    UP000030765    UP000078542    UP000000673    UP000075880    UP000053825    UP000069272    UP000036403    UP000079169    UP000242457    UP000005203    UP000053105    UP000075886    UP000215335    UP000015103    UP000092460    UP000002320    UP000095301    UP000075902    UP000076407    UP000008820    UP000076502    UP000009046    UP000075882    UP000007062    UP000092444    UP000092445    UP000037069    UP000091820    UP000075885    UP000075881    UP000095300    UP000001819   

PRIDE

C8KHM3    C8KHM2    Q0N2S1    H9J5V2    Q76KD3   

Pfam

PF00076   RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR003954   RRM_dom_euk       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

ProteinModelPortal

C8KHM3   C8KHM2   Q0N2S1   H9J5V2   Q76KD3   A0A2W1BH06   + More
A0A194Q7M0   A0A2H1WI71   C0SQ69   A0A3S2P282   A0A2A4JYY1   A0A212FQ18   A0A0N0PB93   C5NMH3   A0A0L7LP39   D6WSZ4   V5I9A6   A0A1Y1KBA5   S4NJ30   A0A0T6AXQ7   J3JYC2   A0A2P8XNW9   A0A1B0GMD7   A0A1L8DH14   A0A1L8DHD0   A0A1B6D785   A0A2J7Q259   A0A1B0CMT7   A0A1B6IIL9   A0A1B6LRL7   A0A1B6GDF4   A0A067QTH3   A0A224XC23   A0A026WSF1   A0A195DVL6   E2AI23   F4W8A5   A0A151I5Z6   A0A195EWU1   A0A158NSN7   A0A151XDV7   A0A224XDP3   A0A310SJP0   A0A084WA20   A0A195CD20   W5JUE3   A0A2M3Z227   A0A182IKZ8   A0A2M4ACE4   A0A0L7R701   A0A182F6J4   A0A2M4BMI5   A0A0J7KPR5   A0A1S4ER17   A0A2A3E6C4   A0A088A059   A0A0N0BE34   A0A182QN73   A0A2A3E5P1   A0A034WU24   A0A232F552   T1HFG1   A0A1Q3F0M3   A0A1B0BJP5   B0X286   A0A1Q3F0K3   U5EX85   A0A0K8V269   W8AS17   W8AGB4   A0A0K8UHD0   A0A0A1XNF5   A0A0A1XLH7   T1PAQ1   A0A1I8MD80   A0A182TIU1   A0A182XEI8   A0A182HTD4   Q175B9   A0A154P4X1   E0VYI5   A0A182LFI5   Q7QBW1   A0A1B0G863   A0A240SX76   A0A0L0CJB3   A0A1A9X1B3   A0A146LK12   A0A182P868   A0A182KH25   A0A1I8P6I4   A0A2H8TUQ6   A0A2S2PKR1   A0A0R3NGZ0  

PDB

2MJN     E-value=3.95327e-61,     Score=595

KEGG

692439    K13201 nucleolysin TIA-1/TIAR | (RefSeq) Tia1, En86; TIA1 cytotoxic granule-associated RNA binding p

GO

GO:0003723   GO:1990904   GO:0005634   GO:0016491   GO:0003676   GO:0000166   GO:0043565   GO:0008134   GO:0019904   GO:0003697   GO:0008094   GO:0005524   GO:0006281   GO:0006259  

Length:

402

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11269

Exp number, first 60 AAs:

0.07323

Total prob of N-in:

0.00700

outside

1  -  402

 

 

Pi

169.328056

Theta

170.948094

Tajima's D

-0.596806

CLR

2.386787

CSRT

0.218889055547223

Interpretation

Possibly Positive selection