Silkworm Genome Informatics Database

Gene

KWMTBOMO15401

Pre Gene Modal

BGIBMGA004887

Annotation

PREDICTED:_hemicentin-1-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr25(+):11747298-11751702 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.631 Nuclear Reliability : 1.728

CDS

ATGATACTAAACCCACCGGAATGCTCCCACCACGGGATAAGATTAGTTAAAGAAGCTTTAAGCTGCAACGTCAAGGCCTTACCGGCGCCAGACACGTACCTGTGGCATATAGAGCCTTCGGATTCGCTGGAGCAGCGCCTCACGACCGGCTCTCGTCTTCTACCTCTCGACCAGATCACGGGCTCCCTTGATAGAAGCTTGAAGGCTAGTTGCGAAGCGAGCAACGGTATAGCCTCGCAGGAACGTGCCTGTGAGAGGACCTTCTCCTTCGAGCAGCTGAGGCCGCGACAGCCTCAGCAGTGCGATCTCGCGTTTGAACACGGCGAGTTCCACATTAGATGTGTCCCAGTCGAAAACGCAACGTATTACGAAGTGTCTGTATGGAAACTATCGACGAGTAACAGCTCTTTAGTCCTCGAGAAACGTGCCCCGATGGGCTTTGGGTCCAGTCAGGCTCTGTCTTCTACGGGAAGCACGTGGCTCGTCAGAGCTGGGCTAGGGAAGCTCGGTGCTGGCGACGAAGCGGGGGCCTTGGCCTGCAATAGATACGGATGCTCAAAGGCTTTGCTGTTGAGGCCTAGTGAAACCCTGCTCAAAGCTGCCTCGCCCCCTTGGTGGAATGTGCTATTATCGAAGGAGGTGTGCATCCCACTGGTGGCTGCGGTTCTCCTTGTGTTGTTTGCTGCGTCCTCGGCGGCGGCGCTGCGGGCGGCACGGCGGGCGCGTACCAAGCCGCCCGTCATACAGGTGCTACAGCTCGATGACGTCACCAGGAACTTTCTAGACAATCTACCTGAGCACAAGCTGCAAGCGTCGTGTAGTCTGCGGTCATGCAGCAGCGGGTACTCGGAGGGCTCGCAGCGCTGGGGACCGCCGCCGCCCGACGTCACCCTCACGCTGCACAGGGAGAGCGCCGTGTGA

Protein

MILNPPECSHHGIRLVKEALSCNVKALPAPDTYLWHIEPSDSLEQRLTTGSRLLPLDQITGSLDRSLKASCEASNGIASQERACERTFSFEQLRPRQPQQCDLAFEHGEFHIRCVPVENATYYEVSVWKLSTSNSSLVLEKRAPMGFGSSQALSSTGSTWLVRAGLGKLGAGDEAGALACNRYGCSKALLLRPSETLLKAASPPWWNVLLSKEVCIPLVAAVLLVLFAASSAAALRAARRARTKPPVIQVLQLDDVTRNFLDNLPEHKLQASCSLRSCSSGYSEGSQRWGPPPPDVTLTLHRESAV

Uniprot

H9J5U7 A0A212FKG9 A0A2H1VJN3 A0A2W1BBP8 A0A3S2M544 A0A194PI93 + More
A0A194RL64 A0A194QDA9 A0A0L7L6L7 A0A194RJQ1 A0A2A4JTX2

Pubmed

19121390 22118469 28756777 26354079 26227816

EMBL

BABH01039887 BABH01039888 BABH01039889 AGBW02008046 OWR54232.1 ODYU01002670 + More
SOQ40464.1 KZ150159 PZC72739.1 RSAL01000037 RVE51163.1 KQ459604 KPI92444.1 KQ460045 KPJ18060.1 KQ459324 KPJ01441.1 JTDY01002674 KOB70969.1 KPJ18058.1 NWSH01000669 PCG74923.1

Proteomes

UP000005204 UP000007151 UP000283053 UP000053268 UP000053240 UP000037510 + More
UP000218220

PRIDE

H9J5U7

Pfam

PF08205 C2-set_2 + More
PF07686 V-set

Interpro

IPR007110   Ig-like_dom        + More
IPR003599   Ig_sub
IPR013783   Ig-like_fold
IPR013162   CD80_C2-set
IPR003598   Ig_sub2
IPR036179   Ig-like_dom_sf
IPR013106   Ig_V-set

SUPFAM

SSF48726 SSF48726

Gene 3D

2.60.40.10

ProteinModelPortal

H9J5U7 A0A212FKG9 A0A2H1VJN3 A0A2W1BBP8 A0A3S2M544 A0A194PI93 + More
A0A194RL64 A0A194QDA9 A0A0L7L6L7 A0A194RJQ1 A0A2A4JTX2

KEGG

101742301 no KO assigned | (RefSeq) hemicentin-1-like

GO

GO:0016021

Length:

306

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

19.65818

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.01326

outside

1 - 215

TMhelix

216 - 235

inside

236 - 306

Pi

214.535267

Theta

178.4581

Tajima's D

1.788877

CLR

0

CSRT

0.84080795960202

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics