Gene

KWMTBOMO15399

Pre Gene Modal

BGIBMGA004887

Annotation

PREDICTED:_hemicentin-1-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr25(+):11726528-11740925      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.014

CDS

ATGCGTCTCGTGTCGACGCTACTATACGCAACGCTGCTTCTGTGCACTCGGGTTTGCGCCTTCATACCCGGTATTGACGGTCCCCTCTCACACCAAGAAGCACTTGAAGGTGGAAACACAACATTCCTCTGCGACACAACCCCTGACTCCTCGGGAGATGAGTTCATGATATTAGTCTGGTACAAAAACAACATTCCCATCTACAGCTTCGAGATCCCCGATCGGGAATGGGCGGACTCCACGTTCAACGCGACAGGTCGGATGTCGGCGGACGTCCGCAGCCAACCGACAGCCATCACGGTGTCTGTACTCACAGAAGATGACCAGGCCGTCTATCACTGCAGAGTAGACTTCAGATTGTCTCCAACGCGCAACATCGGCGTTAACTTGACCGTTGTTGTACTGCCAAGTCCTCCGTTTTTCATGGACGAGCTTGACAATAAAGTAGAGCGCACAGTCGGCACTTACCACGAAGGCGACACTCTGGTACTGAAGTGTCTGGTGATTGGAGGTCGCCCTCCACCCCGATTGAGCTGGTATTCTGGTAGCAACTTGGTAGACGCATCTGATGCAGACAGTGACATTCCCTCGGTGAGGGAAAATGAGCTTTATCTGCCTTTGACACGGGCCAACGCGGGTTCGATATCCTGCAGAGCCAGTAACACGAATTTAGCGCCACCTGTTGAGTCTAAGCTGGATATTGAACTATATTTGCCGGCGTACAACGTGTCCATCCACTGGGTGTGGGGCACGGCGGACGGCGTGCTGCGTGCGGGGCACCCCGTGTTGGCCCAGTGCACCGCGCCCGGCTCCTACCCGCAGCCCGACCTGTCCTGGTGGCTGGACCAGAAGCACTTGACGCGACATAGCAATCAGAGTTGGGTGAGCTCATCCAGCACGGCGATATCGTATCTCGAGCTACATCCGTCGGTGGGCGACGACGGCGCTACGTTAGCGTGCGTAGCCACCAACCACGCGATGGCTCCCAGTCGAAACTCCAAGGCTGATGTCATCACCCTTAACGTCACATATAGTCCATTACTAGAGGTAGTTAGAGTGGGTGACGGTAAACTGAATGAGGTGGTCGAATTGGATCCTCTGCACTTGGAATGCGAGGTCAAAGCAAATCCGCCGGCGTACAAATTTATATGGTATTTTAATGATAGTGAAATAAAATCGAATAGCGTGTGGGGGGAGAATGTTACCAGCCAAGTATTGTACGTTGAGGAAGCGACCAGGGAACACGCCGGCCGATATTCGTGTGTCGCCGTCAACTCTATCGGCGAAACTAGAGCCGAAAGCTTCACTGTGACCGTGCTTTGTAAGTACATTTCCTATTAA

Protein

MRLVSTLLYATLLLCTRVCAFIPGIDGPLSHQEALEGGNTTFLCDTTPDSSGDEFMILVWYKNNIPIYSFEIPDREWADSTFNATGRMSADVRSQPTAITVSVLTEDDQAVYHCRVDFRLSPTRNIGVNLTVVVLPSPPFFMDELDNKVERTVGTYHEGDTLVLKCLVIGGRPPPRLSWYSGSNLVDASDADSDIPSVRENELYLPLTRANAGSISCRASNTNLAPPVESKLDIELYLPAYNVSIHWVWGTADGVLRAGHPVLAQCTAPGSYPQPDLSWWLDQKHLTRHSNQSWVSSSSTAISYLELHPSVGDDGATLACVATNHAMAPSRNSKADVITLNVTYSPLLEVVRVGDGKLNEVVELDPLHLECEVKANPPAYKFIWYFNDSEIKSNSVWGENVTSQVLYVEEATREHAGRYSCVAVNSIGETRAESFTVTVLCKYISY

Uniprot

H9J5U7   A0A2W1BBP8   A0A3S2M544   A0A212FKG9   A0A194PI93   A0A194RL64   + More
A0A194QDA9   A0A194RJQ1   A0A2W1BP33   H9J688   A0A088AEQ8   A0A2A3EAV1   A0A2H8TFI4   A0A2S2NL76   A0A3L8D540   A0A158NCS0   A0A0M9ABL7   J9K2X1   K7J3W1   A0A146LYE1   A0A0A9XSS5   A0A0L7RI46   A0A2S2QDI2   A0A154P3M9   A0A2A3E5P9   A0A088A033   A0A3S2P2C6   D6WPK0   W8AHD9   W8APF5   A0A194QC59   A0A2A4JDY9   A0A232FD16   A0A0A9ZA85   A0A1S3D0I8   A0A194RCY1   A0A1Y1NAB6   A0A084VRP7   A0A158NT60   A0A336LM08   Q16ZZ8   A0A194RLD1   A0A2H1WJ89   A0A212F6U3   A0A2S2NCV8   A0A2W1BQV1   A0A194RL28   A0A194PPB3   A0A1B6DTE2   A0A3S2L969   A0A2H8TGU6   A0A2W1BFG7   A0A336MIU2   A0A3L8D7Y1   T1IV98   A0A182XU94   A0A026WSM2   A0A212FKA1   A0A0C9QIG5   A0A182II24   A0A1B6M7V2   A0A1B6KUS5   A0A0C9PXU9   A0A0C9R081   A0A026WZS6   A0A1B6K7I5   T1J7V3   A0A1I8NHG5   A0A194Q659   H9J5G2   E2A238   A0A154PQL6   A0A194RDG7   A0A212FKE7   B0WA44   A0A2S2Q9A9   A0A195F9V8   A0A2J7PYK2   A0A151HZS0   A0A195EAN5   A0A1B6C6V9   T1HZW4   A0A182IS29   A0A2H1V4B0   A0A0C9S347   T1IVA2   A0A195CH45   A0A151IA00   A0A1S4GDS9   A0A195AY80   A0A0M4ENU1   A0A067RCL4   B4KAZ5   A0A0Q9VZT0   A0A2J7PYN3   A0A182VRA0   A0A1J1HQ06   B4JYH7  

Pubmed

19121390    28756777    22118469    26354079    30249741    21347285    + More
20075255    26823975    25401762    18362917    19820115    24495485    28648823    28004739    24438588    17510324    24508170    25315136    20798317    12364791    24845553    17994087   

EMBL

BABH01039887    BABH01039888    BABH01039889    KZ150159    PZC72739.1    RSAL01000037    + More
RVE51163.1    AGBW02008046    OWR54232.1    KQ459604    KPI92444.1    KQ460045    KPJ18060.1    KQ459324    KPJ01441.1    KPJ18058.1    KZ150046    PZC74490.1    BABH01019913    KZ288301    PBC28857.1    GFXV01000223    MBW12028.1    GGMR01005320    MBY17939.1    QOIP01000014    RLU14968.1    ADTU01011685    ADTU01011686    ADTU01011687    ADTU01011688    ADTU01011689    ADTU01011690    ADTU01011691    ADTU01011692    ADTU01011693    ADTU01011694    KQ435710    KOX79819.1    ABLF02039633    ABLF02039634    ABLF02039636    ABLF02039639    ABLF02039640    ABLF02039642    ABLF02039645    ABLF02039646    ABLF02039647    ABLF02039648    AAZX01000985    AAZX01008934    GDHC01005991    JAQ12638.1    GBHO01019822    JAG23782.1    KQ414588    KOC70468.1    GGMS01006538    MBY75741.1    KQ434809    KZC06457.1    KZ288379    PBC26576.1    RSAL01000001    RVE55340.1    KQ971354    EFA06209.2    GAMC01018645    JAB87910.1    GAMC01018648    JAB87907.1    KQ459439    KPJ01021.1    NWSH01001734    PCG70297.1    NNAY01000395    OXU28681.1    GBHO01004899    GBRD01005769    GDHC01012855    JAG38705.1    JAG60052.1    JAQ05774.1    KQ460397    KPJ15324.1    GEZM01008094    JAV94862.1    ATLV01015761    ATLV01015762    KE525036    KFB40641.1    ADTU01025502    ADTU01025503    ADTU01025504    ADTU01025505    ADTU01025506    ADTU01025507    ADTU01025508    ADTU01025509    ADTU01025510    ADTU01025511    UFQS01000043    UFQT01000043    SSW98369.1    SSX18755.1    CH477479    EAT40242.1    KPJ18125.1    ODYU01008707    SOQ52514.1    AGBW02009972    OWR49444.1    GGMR01002432    MBY15051.1    KZ149994    PZC75507.1    KPJ18124.1    KQ459596    KPI95281.1    GEDC01008360    GEDC01006854    JAS28938.1    JAS30444.1    RSAL01000082    RVE48510.1    GFXV01001542    MBW13347.1    KZ150099    PZC73538.1    UFQS01001282    UFQT01001282    SSX10113.1    SSX29835.1    QOIP01000011    RLU16384.1    JH431579    KK107111    EZA59032.1    AGBW02008103    OWR54162.1    GBYB01000377    JAG70144.1    APCN01002092    APCN01002093    GEBQ01007979    JAT31998.1    GEBQ01024973    JAT15004.1    GBYB01006328    JAG76095.1    GBYB01000378    GBYB01001375    JAG70145.1    JAG71142.1    KK107061    EZA61348.1    GECU01000294    JAT07413.1    JH431944    KPJ01023.1    BABH01028139    GL435917    EFN72486.1    KQ435007    KZC13410.1    KPJ15325.1    AGBW02008062    OWR54211.1    DS231868    EDS40777.1    GGMS01004947    MBY74150.1    KQ981727    KYN37161.1    NEVH01020344    PNF21423.1    KQ976642    KYM78678.1    KQ979236    KYN22176.1    GEDC01028050    JAS09248.1    ACPB03001712    ODYU01000599    SOQ35673.1    GBYB01015336    JAG85103.1    KQ977791    KYM99751.1    KQ978252    KYM95902.1    AAAB01008987    KQ976703    KYM77198.1    CP012526    ALC46414.1    KK852551    KDR21492.1    CH933806    EDW14673.2    CH940656    KRF78339.1    PNF21422.1    CVRI01000006    CRK88297.1    CH916377    EDV90739.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053268    UP000053240    UP000005203    + More
UP000242457    UP000279307    UP000005205    UP000053105    UP000007819    UP000002358    UP000053825    UP000076502    UP000007266    UP000218220    UP000215335    UP000079169    UP000030765    UP000008820    UP000076407    UP000053097    UP000075840    UP000095301    UP000000311    UP000002320    UP000078541    UP000235965    UP000078540    UP000078492    UP000015103    UP000075880    UP000078542    UP000092553    UP000027135    UP000009192    UP000008792    UP000075920    UP000183832    UP000001070   

PRIDE

H9J5U7    H9J688    H9J5G2   

Pfam

PF08205   C2-set_2        + More
PF07686   V-set
PF00047   ig
PF00041   fn3
PF07679   I-set
PF13895   Ig_2
PF16012   DUF4780

Interpro

IPR007110   Ig-like_dom        + More
IPR003599   Ig_sub       
IPR013783   Ig-like_fold       
IPR013162   CD80_C2-set       
IPR003598   Ig_sub2       
IPR036179   Ig-like_dom_sf       
IPR013106   Ig_V-set       
IPR036116   FN3_sf       
IPR013151   Immunoglobulin       
IPR003961   FN3_dom       
IPR013098   Ig_I-set       
IPR031961   DUF4780       

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

H9J5U7   A0A2W1BBP8   A0A3S2M544   A0A212FKG9   A0A194PI93   A0A194RL64   + More
A0A194QDA9   A0A194RJQ1   A0A2W1BP33   H9J688   A0A088AEQ8   A0A2A3EAV1   A0A2H8TFI4   A0A2S2NL76   A0A3L8D540   A0A158NCS0   A0A0M9ABL7   J9K2X1   K7J3W1   A0A146LYE1   A0A0A9XSS5   A0A0L7RI46   A0A2S2QDI2   A0A154P3M9   A0A2A3E5P9   A0A088A033   A0A3S2P2C6   D6WPK0   W8AHD9   W8APF5   A0A194QC59   A0A2A4JDY9   A0A232FD16   A0A0A9ZA85   A0A1S3D0I8   A0A194RCY1   A0A1Y1NAB6   A0A084VRP7   A0A158NT60   A0A336LM08   Q16ZZ8   A0A194RLD1   A0A2H1WJ89   A0A212F6U3   A0A2S2NCV8   A0A2W1BQV1   A0A194RL28   A0A194PPB3   A0A1B6DTE2   A0A3S2L969   A0A2H8TGU6   A0A2W1BFG7   A0A336MIU2   A0A3L8D7Y1   T1IV98   A0A182XU94   A0A026WSM2   A0A212FKA1   A0A0C9QIG5   A0A182II24   A0A1B6M7V2   A0A1B6KUS5   A0A0C9PXU9   A0A0C9R081   A0A026WZS6   A0A1B6K7I5   T1J7V3   A0A1I8NHG5   A0A194Q659   H9J5G2   E2A238   A0A154PQL6   A0A194RDG7   A0A212FKE7   B0WA44   A0A2S2Q9A9   A0A195F9V8   A0A2J7PYK2   A0A151HZS0   A0A195EAN5   A0A1B6C6V9   T1HZW4   A0A182IS29   A0A2H1V4B0   A0A0C9S347   T1IVA2   A0A195CH45   A0A151IA00   A0A1S4GDS9   A0A195AY80   A0A0M4ENU1   A0A067RCL4   B4KAZ5   A0A0Q9VZT0   A0A2J7PYN3   A0A182VRA0   A0A1J1HQ06   B4JYH7  

PDB

5OJ6     E-value=5.10373e-11,     Score=164

KEGG

101742301    no KO assigned | (RefSeq) hemicentin-1-like

GO

GO:0016021   GO:0005515   GO:0006355   GO:0043565   GO:0008134   GO:0019904   GO:0003697   GO:0008094   GO:0005524   GO:0006281   GO:0006259  

SignalP

Position:   1 - 20,         Likelihood:  0.994598

 

 

Length:

446

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.01155

Exp number, first 60 AAs:

2.99574

Total prob of N-in:

0.14546

outside

1  -  446

 

 

Pi

259.355357

Theta

176.82657

Tajima's D

1.688499

CLR

0.006396

CSRT

0.828108594570272

Interpretation

Uncertain