Gene
KWMTBOMO15398
Annotation
Retrovirus-related_Pol_polyprotein_from_transposon_412-like_Protein_[Tribolium_castaneum]
Location in the cell
Nuclear Reliability : 3.404
Sequence
CDS
ATGAAACTAAATAGTTCATCCCATGACTCAATAAATCACAAATTCCACGTCATAGACAAGATTCATCTGCCTTATGACGGCATCATCGGATCAGATATGCTGAATCATTTCGGCTGCATGATTGACTATACTAAAAATCAACTTAAATTAAATAAAACATATTTACCACTCCGTTTTAATGAACCAACTTATACTATACCTGCTAGATCAGAAATGATAATCGAATGTTCCGTTTCAAACCCTGAAGTTAAACAAGGTCTTGTATTAGATCAAACTCAATTAAAGGATATCCTAATCGCAAATTGCCTAGTTAAAGTAAAAGAAAACAAACGAATAAACTTAACTGTAGTAAATATCTCTGAGTCTCCTAAAACTCTAACTTCAAACCTCAACATAACTTTGATTCCACTAGAACCTTCTGTCTTACATTCAAAAGAAACTTCAGAACAATACTCAATAAATACCGTTCAAACCCAAAATACCTTCCAACGAACTAAAGAAGTCCTAAATCAACTTCGAGTATCACACCTAAATTTTGAAGAATCTAATTCTCTTTACCAAATATGCTCTGACTATTCAGACATATTCCACTTACCTGGTGAACCATTGACATCAACTAACGTACTACGTCATAACATAAAAACCACAACCAATGATCCTATCCATGTAAAATCATACAGATTTCCCGAATGTCACAAACATGAAGTTCAAACTCAAATAGAGAAAATGCTTAAAGATGACATTATACAACCATCAATGTCTCCATGGTCTGCTCCTATTTGGGTAGTCCCGAAGAAACTTGATGCCTCCGGCCAGCGTAAATGGAGAGTTGTTATCGATTACAGGAAACTAAACGACATCACTATAGGTGACTCTTATCCTATCCCCAACATAAATGAAATTCTAGATCAACTCGGAAAATCAAAATATTTCTCCACGTTGGATCTTGCCTCTGGATTTCATCAGATCCAAATGTCTGCCGAAGATGCTCCTAAAACCGCTTTCAGTATTCCACAAGGACATTTTGAATTTAAAAGAATGCCATTCGGACTCAAGAACGCACCATCAACGTTCCAGAGATTAATGAACTCTGTCCTCTCAGGTCTGCAAGGCACTCGCTGCTTTGTGTATCTTGATGACATTGTAATATACTCGTATGACCTTGACTCTCATATGAATAACCTCGAAAGTGTATTTAAACGTCTACGAGAATTCAATCTTAAGCTTCAACCCGATAAGTGCGAATTCCTTCGAAAGGAAGTCTCGTACCTTGGCCACCTGATCACTGATGAAGGAGTCAAACCTGACCCAGCTAAGATCCGAGCCGTATCTGAATTTCCAGTTCCTAAATGCCCGAAAGATGTAAAATCTTTCCTAGGGCTTATGTCTTACTACCGAAAGTTTATTCCAGAATTTTCAAAAACAGCTAAATCATTAACTTCCCTATTAAAGAAAGATATCACCTTCACTTGGAACAACGAACAACAACTCGCTTTTGAAACACTCAAAAATCGTCTAATTTCTCCTCCTCTCCTCATATATCCCGATTTTACTAAACCATTTACCCTCACCTGTGATGCCTCTAACTACGCAATTAGTGCTATCCTCTCGCAAGGAGATCCAAATAGAGATAAGCCAATCGCTTACGCATCCCGGACCCTAAACAAAAGTGAAATAAATTACAATGTTACAGAAAAAGAATTATTAGCAATTATGTATGGGTGCAAAACTTTTAGACCTTACCTATATGGTCAAAAATTCAAAATCATAACCGATCATAATCCACTTAAGTGGCTTTTTAACCACAAAGACCCCTCAAGCAAGATGCAAAGATGGAGATTGAAATTAGAAGAGTATGACTACGAAATAACCCATAAAAAAGGCAAATTAAATTCAGCTGCAGACGCACTATCCAGATACCCCGTCAACCCTGTCAGAAGCTTAAATAATATAAACTCTGACCCAATTCCCGTCTTACCTATTTCTGACCCTCTGATCTCTTCTCAACCTGTACCCGAACAAAATCCACATCACTCTAACACATCTAATAGTGAACCTCCTCTTGAAACACTTCCTCTAGACGGCTTACTTACGTCAAGTCCTTTTAACCCTGATGATTACAACTTACCTTCACTAGAACCCCTTCAAGATATCGATCTCCTACCAAACAGTCCGTTCAATCCTGAAAATGAAATAGATGACCGCAATCTTAATAACAATGATAACATAAATCCTCCGACTAACAGTACTCCCAACCCTATGATTGATGATGAAAACCTACCAAGAAATCCATCAATTAACCTTCCGAGTCCCGAACCAAATTCCTGTCGGCACCATGTCAAGGCCTATCACGCACTCGAGAAATTACCAATATCGAACAAATTACGAAAAGCCCTGGCATCTACTTTAATCCCTCGGGATCTGTTAGGTTAA
Protein
MKLNSSSHDSINHKFHVIDKIHLPYDGIIGSDMLNHFGCMIDYTKNQLKLNKTYLPLRFNEPTYTIPARSEMIIECSVSNPEVKQGLVLDQTQLKDILIANCLVKVKENKRINLTVVNISESPKTLTSNLNITLIPLEPSVLHSKETSEQYSINTVQTQNTFQRTKEVLNQLRVSHLNFEESNSLYQICSDYSDIFHLPGEPLTSTNVLRHNIKTTTNDPIHVKSYRFPECHKHEVQTQIEKMLKDDIIQPSMSPWSAPIWVVPKKLDASGQRKWRVVIDYRKLNDITIGDSYPIPNINEILDQLGKSKYFSTLDLASGFHQIQMSAEDAPKTAFSIPQGHFEFKRMPFGLKNAPSTFQRLMNSVLSGLQGTRCFVYLDDIVIYSYDLDSHMNNLESVFKRLREFNLKLQPDKCEFLRKEVSYLGHLITDEGVKPDPAKIRAVSEFPVPKCPKDVKSFLGLMSYYRKFIPEFSKTAKSLTSLLKKDITFTWNNEQQLAFETLKNRLISPPLLIYPDFTKPFTLTCDASNYAISAILSQGDPNRDKPIAYASRTLNKSEINYNVTEKELLAIMYGCKTFRPYLYGQKFKIITDHNPLKWLFNHKDPSSKMQRWRLKLEEYDYEITHKKGKLNSAADALSRYPVNPVRSLNNINSDPIPVLPISDPLISSQPVPEQNPHHSNTSNSEPPLETLPLDGLLTSSPFNPDDYNLPSLEPLQDIDLLPNSPFNPENEIDDRNLNNNDNINPPTNSTPNPMIDDENLPRNPSINLPSPEPNSCRHHVKAYHALEKLPISNKLRKALASTLIPRDLLG
Summary
Uniprot
D7GXP0
A0A1Y1KJL2
A0A2J7PEY0
A0A0J7KFZ4
A0A2J7Q0T0
A0A2S2NNZ3
+ More
A0A2J7PFW5 A0A2H8TVW1 A0A2J7QWM2 A0A0K8TRU1 A0A2S2NLS2 Q65353 A0A2S2NFT1 X1WUD2 X1WLD0 X1X2K6 J9M441 Q5BN17 A0A2J7PPW9 X1WM57 A0A2S2NN14 O46115 A0A1W7R6F0 A0A1B6DI21 J9LJV3 A0A2J7PDA1 J9LS83 A0A2J7PRU8 A0A146L836 A0A1B6E8Y4 X1XQI4 X1X3W2 A0A1W7R6J9 A0A0A9YU38 D6WE31 A0A2J7RBZ9 A0A2J7QTC1 V5GQE1 U5ES61 A0A2S2P749 A0A146KMA2 A0A1Y1KML2 A0A0A9XG63 A0A0A9XD39 A0A1W7R695 A0A1W7R686 A0A0A9YJ44 V5I864 A0A0A9XBE2 X1WX89 X1WUN1 A0A0J7KPW8 A0A146LB26 A0A0K8S7R8 X1WLJ7 J9KPM2 X1XU34 A0A2S2NQ60 A0A0A9X844 J9LWC7 O96740 A0A1W7R6M6 T1E1D6
A0A2J7PFW5 A0A2H8TVW1 A0A2J7QWM2 A0A0K8TRU1 A0A2S2NLS2 Q65353 A0A2S2NFT1 X1WUD2 X1WLD0 X1X2K6 J9M441 Q5BN17 A0A2J7PPW9 X1WM57 A0A2S2NN14 O46115 A0A1W7R6F0 A0A1B6DI21 J9LJV3 A0A2J7PDA1 J9LS83 A0A2J7PRU8 A0A146L836 A0A1B6E8Y4 X1XQI4 X1X3W2 A0A1W7R6J9 A0A0A9YU38 D6WE31 A0A2J7RBZ9 A0A2J7QTC1 V5GQE1 U5ES61 A0A2S2P749 A0A146KMA2 A0A1Y1KML2 A0A0A9XG63 A0A0A9XD39 A0A1W7R695 A0A1W7R686 A0A0A9YJ44 V5I864 A0A0A9XBE2 X1WX89 X1WUN1 A0A0J7KPW8 A0A146LB26 A0A0K8S7R8 X1WLJ7 J9KPM2 X1XU34 A0A2S2NQ60 A0A0A9X844 J9LWC7 O96740 A0A1W7R6M6 T1E1D6
Pubmed
EMBL
GG694348
EFA13518.1
GEZM01081533
JAV61609.1
NEVH01026087
PNF14896.1
+ More
LBMM01008064 KMQ89174.1 NEVH01019964 PNF22169.1 GGMR01006290 MBY18909.1 NEVH01025646 PNF15218.1 GFXV01006571 MBW18376.1 NEVH01009425 PNF32982.1 GDAI01000740 JAI16863.1 GGMR01005468 MBY18087.1 M32662 AAA92249.1 GGMR01003444 MBY16063.1 ABLF02041284 ABLF02041728 ABLF02024213 ABLF02042472 AY928610 AAX28844.1 NEVH01022642 PNF18384.1 ABLF02001345 ABLF02006651 ABLF02006655 ABLF02054079 ABLF02054906 ABLF02062695 GGMR01005970 MBY18589.1 AJ000387 CAA04050.1 GEHC01000906 JAV46739.1 GEDC01017847 GEDC01011974 JAS19451.1 JAS25324.1 ABLF02008732 ABLF02041376 NEVH01026392 PNF14303.1 NEVH01021952 PNF19057.1 GDHC01015253 JAQ03376.1 GEDC01002915 JAS34383.1 ABLF02041371 GEHC01000905 JAV46740.1 GBHO01007885 JAG35719.1 KQ971324 EFA01226.1 NEVH01005888 PNF38366.1 NEVH01011195 PNF31840.1 GALX01004629 JAB63837.1 GANO01002504 JAB57367.1 GGMR01012631 MBY25250.1 GDHC01021754 JAP96874.1 GEZM01078735 JAV62639.1 GBHO01024993 JAG18611.1 GBHO01024992 JAG18612.1 GEHC01000948 JAV46697.1 GEHC01000961 JAV46684.1 GBHO01012506 JAG31098.1 GALX01005230 JAB63236.1 GBHO01026285 JAG17319.1 ABLF02035279 ABLF02041373 ABLF02025379 ABLF02025385 ABLF02041365 ABLF02057103 LBMM01004455 KMQ92398.1 GDHC01013046 JAQ05583.1 GBRD01016627 JAG49199.1 ABLF02011176 ABLF02041729 ABLF02041632 ABLF02008932 ABLF02008933 GGMR01006639 MBY19258.1 GBHO01030350 GBHO01030349 GBHO01030347 GBHO01030345 JAG13254.1 JAG13255.1 JAG13257.1 JAG13259.1 ABLF02012660 ABLF02012662 AJ009736 CAA08807.1 GEHC01000875 JAV46770.1 GALA01001779 JAA93073.1
LBMM01008064 KMQ89174.1 NEVH01019964 PNF22169.1 GGMR01006290 MBY18909.1 NEVH01025646 PNF15218.1 GFXV01006571 MBW18376.1 NEVH01009425 PNF32982.1 GDAI01000740 JAI16863.1 GGMR01005468 MBY18087.1 M32662 AAA92249.1 GGMR01003444 MBY16063.1 ABLF02041284 ABLF02041728 ABLF02024213 ABLF02042472 AY928610 AAX28844.1 NEVH01022642 PNF18384.1 ABLF02001345 ABLF02006651 ABLF02006655 ABLF02054079 ABLF02054906 ABLF02062695 GGMR01005970 MBY18589.1 AJ000387 CAA04050.1 GEHC01000906 JAV46739.1 GEDC01017847 GEDC01011974 JAS19451.1 JAS25324.1 ABLF02008732 ABLF02041376 NEVH01026392 PNF14303.1 NEVH01021952 PNF19057.1 GDHC01015253 JAQ03376.1 GEDC01002915 JAS34383.1 ABLF02041371 GEHC01000905 JAV46740.1 GBHO01007885 JAG35719.1 KQ971324 EFA01226.1 NEVH01005888 PNF38366.1 NEVH01011195 PNF31840.1 GALX01004629 JAB63837.1 GANO01002504 JAB57367.1 GGMR01012631 MBY25250.1 GDHC01021754 JAP96874.1 GEZM01078735 JAV62639.1 GBHO01024993 JAG18611.1 GBHO01024992 JAG18612.1 GEHC01000948 JAV46697.1 GEHC01000961 JAV46684.1 GBHO01012506 JAG31098.1 GALX01005230 JAB63236.1 GBHO01026285 JAG17319.1 ABLF02035279 ABLF02041373 ABLF02025379 ABLF02025385 ABLF02041365 ABLF02057103 LBMM01004455 KMQ92398.1 GDHC01013046 JAQ05583.1 GBRD01016627 JAG49199.1 ABLF02011176 ABLF02041729 ABLF02041632 ABLF02008932 ABLF02008933 GGMR01006639 MBY19258.1 GBHO01030350 GBHO01030349 GBHO01030347 GBHO01030345 JAG13254.1 JAG13255.1 JAG13257.1 JAG13259.1 ABLF02012660 ABLF02012662 AJ009736 CAA08807.1 GEHC01000875 JAV46770.1 GALA01001779 JAA93073.1
Proteomes
Pfam
Interpro
IPR021109
Peptidase_aspartic_dom_sf
+ More
IPR036397 RNaseH_sf
IPR041588 Integrase_H2C2
IPR000477 RT_dom
IPR041577 RT_RNaseH_2
IPR001584 Integrase_cat-core
IPR012337 RNaseH-like_sf
IPR041373 RT_RNaseH
IPR001969 Aspartic_peptidase_AS
IPR001995 Peptidase_A2_cat
IPR002589 Macro_dom
IPR036875 Znf_CCHC_sf
IPR001878 Znf_CCHC
IPR018061 Retropepsins
IPR022048 Envelope_fusion-like
IPR003653 Peptidase_C48_C
IPR038765 Papain-like_cys_pep_sf
IPR036397 RNaseH_sf
IPR041588 Integrase_H2C2
IPR000477 RT_dom
IPR041577 RT_RNaseH_2
IPR001584 Integrase_cat-core
IPR012337 RNaseH-like_sf
IPR041373 RT_RNaseH
IPR001969 Aspartic_peptidase_AS
IPR001995 Peptidase_A2_cat
IPR002589 Macro_dom
IPR036875 Znf_CCHC_sf
IPR001878 Znf_CCHC
IPR018061 Retropepsins
IPR022048 Envelope_fusion-like
IPR003653 Peptidase_C48_C
IPR038765 Papain-like_cys_pep_sf
Gene 3D
ProteinModelPortal
D7GXP0
A0A1Y1KJL2
A0A2J7PEY0
A0A0J7KFZ4
A0A2J7Q0T0
A0A2S2NNZ3
+ More
A0A2J7PFW5 A0A2H8TVW1 A0A2J7QWM2 A0A0K8TRU1 A0A2S2NLS2 Q65353 A0A2S2NFT1 X1WUD2 X1WLD0 X1X2K6 J9M441 Q5BN17 A0A2J7PPW9 X1WM57 A0A2S2NN14 O46115 A0A1W7R6F0 A0A1B6DI21 J9LJV3 A0A2J7PDA1 J9LS83 A0A2J7PRU8 A0A146L836 A0A1B6E8Y4 X1XQI4 X1X3W2 A0A1W7R6J9 A0A0A9YU38 D6WE31 A0A2J7RBZ9 A0A2J7QTC1 V5GQE1 U5ES61 A0A2S2P749 A0A146KMA2 A0A1Y1KML2 A0A0A9XG63 A0A0A9XD39 A0A1W7R695 A0A1W7R686 A0A0A9YJ44 V5I864 A0A0A9XBE2 X1WX89 X1WUN1 A0A0J7KPW8 A0A146LB26 A0A0K8S7R8 X1WLJ7 J9KPM2 X1XU34 A0A2S2NQ60 A0A0A9X844 J9LWC7 O96740 A0A1W7R6M6 T1E1D6
A0A2J7PFW5 A0A2H8TVW1 A0A2J7QWM2 A0A0K8TRU1 A0A2S2NLS2 Q65353 A0A2S2NFT1 X1WUD2 X1WLD0 X1X2K6 J9M441 Q5BN17 A0A2J7PPW9 X1WM57 A0A2S2NN14 O46115 A0A1W7R6F0 A0A1B6DI21 J9LJV3 A0A2J7PDA1 J9LS83 A0A2J7PRU8 A0A146L836 A0A1B6E8Y4 X1XQI4 X1X3W2 A0A1W7R6J9 A0A0A9YU38 D6WE31 A0A2J7RBZ9 A0A2J7QTC1 V5GQE1 U5ES61 A0A2S2P749 A0A146KMA2 A0A1Y1KML2 A0A0A9XG63 A0A0A9XD39 A0A1W7R695 A0A1W7R686 A0A0A9YJ44 V5I864 A0A0A9XBE2 X1WX89 X1WUN1 A0A0J7KPW8 A0A146LB26 A0A0K8S7R8 X1WLJ7 J9KPM2 X1XU34 A0A2S2NQ60 A0A0A9X844 J9LWC7 O96740 A0A1W7R6M6 T1E1D6
PDB
4OL8
E-value=1.52076e-70,
Score=679
Ontologies
KEGG
GO
Topology
Length:
810
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00857999999999999
Exp number, first 60 AAs:
0.00839
Total prob of N-in:
0.00046
outside
1 - 810
Population Genetic Test Statistics
Pi
195.013688
Theta
40.294687
Tajima's D
-1.2718
CLR
140.535547
CSRT
0.0917454127293635
Interpretation
Uncertain
