SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15394
Pre Gene Modal
BGIBMGA005097
Annotation
PREDICTED:_hypoxia-inducible_factor_1-alpha-like_[Bombyx_mori]
Location
Bomo_Chr25(-):11335839-11397111      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.772
 

Sequence

CDS
ATGTTGGCGTCGACTGAAGACAACGAACGTAACAATAACGAAACCAAAGCCGACGAAGAGAAGAAAGGGAAGGCTGGTTGTCTTGTAGCAGTCGGTCGTCCCATCCCACATCCATCCAACATCGAGATACCGCTCGACAGCAAAACGTTCCTGTCCAAACACAGCTTGGACATGAAGTTCACTTATGTCGATGAGTCTTTGTTGAACACACTTGGCTTCGGTTCAGAAGAGCTGGTCGGACGTTCGCTGTACGATTATCATCACGCAGCCGACAGCGCTTCCATGATACAACAGTTTAAATCACTATTCTCCAAAGGACAATGCGAGACTGGACAGTACCGTTTCCTGGCGAAATCGGGTGGTTACTCTTGGGTCCAAACTCAAGCCACCGTGATCACCGACAAGCAGCAGAAACCTATCAGCGTCGTCTGTGTCAACTACATCATAAGCGGTATCGAGTGCAAAGATGAGGTGTTTGCCGCACACCAAGTGCAGCACGCCGATTTGAAACCGAAGCTGCCAGCTGTCGCGTCGCCGGGCGTCTCCTTCCGTGCACCCGTCGAACCGCTCGCTAACGGCGCTATAGTCGCCATCGTTCCGCCGGAGGAAGAACGACCTATACCGGTCACGGAACTCATATTCGCACCGAGAAAGAAAGAAATGAATAAAGGCTTTCTCATGTTCTCCCAAGACGAGGGACTTACAATGCTTAAAGACGAGCCGGAAGATCTGACACATTTGGCGCCCACCGCCGGTGACGCTTGTATTCCACTGGAGAACAGTCCTTTTGATATGTTTGATGAGTTTATATTGAGCGATAACTATTGTAGTTTGCTCGGCGATGATTTAGCTAACGGATCGCCGGTAGATCCTCTAGCTCCCGATCCCTCATTACTATCATCGCCTGAATCACAGGAAAATGATTCGTCTTGCGAACAATCCTCATTACTGACAGAGCTGTCGCTGGATGCTTTCGATAATACAAGGTCGGACGAGATTGACGACAGCAATTCGCCATTTATACCTATAAGCGATGAGCTTCCCGTGCTGGAGCCGGCTGTCATGTGGGGAGCCCTGCCTGACAGTGTTAGCCAGGCCAGACCGCAACCTTCCGAGACGCACACATCACCGGCACCGGCATTACAACGCTTACTCACGGGTCCGCCCCCTCAGGATCTCATTACCAGCATATACTCAGACCAAGGTCTAATGCCAAGCAGAAGCATATCAACTTGGGATACGGGAGTGAAACGAGTGATGAAAGAGGAAGAAGAGCCTAGTGCCAAACGCGTGAAGCGTAGTCCCTCCCCAGTTGCACCAAAACCGAAATCGCAATCGTCGAGTGTCCTCATGAACCTCCTGGACATCCCTCAACAGTCCACGCCACATAAGCAGCCCATGAAAGCAAATTATCAAATCTTACCAAACACACAAATGTTAGGGCTCCAGAATGTACTTCATAGAAACATGCAAGTGCCTATCATAAACATAACGCAGGCCGTTCCTAACAAACATGTGATGCGCGCCAGCACTCCCATCAATCAAATGCGAACAAACATGACAACCGGCCCTATGTCCCCGCTCAGTCTCAACATAGGCAGCCCGATGTACTCCCTGCCTTCCAGCCCTAACAGCTATTCCAGTCCCGCCATGAGCCCAGCGCAGAGAGAACGTGTTATGAGTCCTTACTCCACACCACAATCCTTATCCCCAGTAGGTAAGTTCCATCAAATGTACAGCCCAGGGCAGAGGATGGTGTCTCCAACCGGCGTCATACAGGGATCAGACCCGTATCTGACGACGAAAATGCAGCCAAGCCCAGGGTTCCCGATGCAGGTGAACGATATTCTACTGGACACGAACGTGCAACTCCCAACATCGGATTTCTGGGCCGACCCGGAGTTTCTTCAGGGGACCAGCGACCTGTTAACTGCTTTCGATGACGTCAAACTTGGGTAG
Protein
MLASTEDNERNNNETKADEEKKGKAGCLVAVGRPIPHPSNIEIPLDSKTFLSKHSLDMKFTYVDESLLNTLGFGSEELVGRSLYDYHHAADSASMIQQFKSLFSKGQCETGQYRFLAKSGGYSWVQTQATVITDKQQKPISVVCVNYIISGIECKDEVFAAHQVQHADLKPKLPAVASPGVSFRAPVEPLANGAIVAIVPPEEERPIPVTELIFAPRKKEMNKGFLMFSQDEGLTMLKDEPEDLTHLAPTAGDACIPLENSPFDMFDEFILSDNYCSLLGDDLANGSPVDPLAPDPSLLSSPESQENDSSCEQSSLLTELSLDAFDNTRSDEIDDSNSPFIPISDELPVLEPAVMWGALPDSVSQARPQPSETHTSPAPALQRLLTGPPPQDLITSIYSDQGLMPSRSISTWDTGVKRVMKEEEEPSAKRVKRSPSPVAPKPKSQSSSVLMNLLDIPQQSTPHKQPMKANYQILPNTQMLGLQNVLHRNMQVPIINITQAVPNKHVMRASTPINQMRTNMTTGPMSPLSLNIGSPMYSLPSSPNSYSSPAMSPAQRERVMSPYSTPQSLSPVGKFHQMYSPGQRMVSPTGVIQGSDPYLTTKMQPSPGFPMQVNDILLDTNVQLPTSDFWADPEFLQGTSDLLTAFDDVKLG

Summary

Uniprot
A0A140CTX5   A0A194RKJ2   A0A212EZ70   A0A2A4J4K4   A0A2H1W5B3   A0A194Q7S6   + More
A0A0L7L2P6  
Pubmed
26354079    22118469    26227816   
EMBL
KU552106    AMH87782.1    KQ460045    KPJ18057.1    AGBW02011351    OWR46795.1    + More
NWSH01003193    PCG66809.1    ODYU01006437    SOQ48285.1    KQ459324    KPJ01444.1    JTDY01003435    KOB69559.1   
Proteomes
UP000053240    UP000007151    UP000218220    UP000053268    UP000037510   
Pfam
PF00989   PAS        + More
PF08447   PAS_3
Interpro
IPR013767   PAS_fold        + More
IPR001610   PAC       
IPR035965   PAS-like_dom_sf       
IPR011598   bHLH_dom       
IPR013655   PAS_fold_3       
IPR001067   Nuc_translocat       
IPR000014   PAS       
IPR036638   HLH_DNA-bd_sf       
SUPFAM
SSF55785   SSF55785        + More
SSF47459   SSF47459       
CDD
cd00130  PAS
 cd00083  HLH
ProteinModelPortal
A0A140CTX5   A0A194RKJ2   A0A212EZ70   A0A2A4J4K4   A0A2H1W5B3   A0A194Q7S6   + More
A0A0L7L2P6  
PDB
4ZPR     E-value=8.07166e-44,     Score=448

Ontologies

KEGG
101739525    K08268 hypoxia-inducible factor 1 alpha | (RefSeq) hypoxia-inducible factor 1-alpha-like
GO
GO:0003700   GO:0005667   GO:0005634   GO:0005737   GO:0003677   GO:0046983   GO:0006355   GO:0005515   GO:0043565   GO:0008134   GO:0019904   GO:0003697   GO:0008094   GO:0005524   GO:0006281   GO:0006259  

Topology

Subcellular location
Nucleus  
Length:
652
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.000610000000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00054
outside
1  -  652
 
 

Population Genetic Test Statistics

Pi
214.896776
Theta
170.77254
Tajima's D
0.22194
CLR
1.615997
CSRT
0.433278336083196
Interpretation
Uncertain
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