Silkworm Genome Informatics Database

Gene

KWMTBOMO15388

Pre Gene Modal

BGIBMGA005103

Annotation

PREDICTED:_polyhomeotic-proximal_chromatin_protein-like_isoform_X1_[Rattus_norvegicus]

Location

Bomo_Chr25(-):11080387-11083061 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.4 PlasmaMembrane Reliability : 1.907

CDS

ATGAATACGTCATCCAATCGAGTTCTTAGATTCGAAACGTCGCAAGAGCTAAACGCGACTGAGGAACTAGAAGAACAGAAGAAGTCTATGCGTCCGAAATCGGAACGTGCTAAGAAATCGAAGGGGGCCACGCAGAAGTGGATGATGGGGTTACTGTTGTACAACACGTGCCTCGCCCCGCTGTCCGGGTACTGCGCCGACACGCTCCTGCAGTGCGGGCTCGACGTCGCCGCGTACGGCTGGGGGGCGCACGTCCTCAGACATGTGATCAGACAGGTTCCTAACGAGTACAGCTTGCAGACTATGCTCTTACTGTTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTCCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTCCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTCCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTCCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTTTAGTTCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTCCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTCCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACCAGTACAGCTTGCAGACTATGCTCTTACTGTTTCCAACGAGTACAGCTTGCAGAATATTATCTTATTGTTCCCAACGAGTACAGCTTCCAGACTATGCTCTTACTGTTCCCAACGAGTACAGCTTGCAGACTATGCTCTTATTGTTCCCAACGAGTACAGCTTGCAGAATATTAACTTATTGCTCCCAACGACTACAGCTTGCAGACTATGCTCTTATCGTTTCCAGCGAGTACAGCTTGCAGAATATGCTCTTACCAAAAAAAAAGGGGGAGGGGCAACTCACCCAAGACATTCTATATAG

Protein

MNTSSNRVLRFETSQELNATEELEEQKKSMRPKSERAKKSKGATQKWMMGLLLYNTCLAPLSGYCADTLLQCGLDVAAYGWGAHVLRHVIRQVPNEYSLQTMLLLFPTSTACRILSYCSQPVQLADYALTVSNEYSLQNIILLFPTSTACRLCSYCFQRVQLAEYYLIVPNQYSLQTMLLLFPTSTACRILSYCSQPVQLADYALTVSNEYSLQNIILLFPTSTACRLCSYCFQRVQLAEYYLIVPNQYSLQTMLLLFPTSTACRILSYCSQPVQLADYALTVSNEYSLQNIILLFPTSTACRLCSYCFQRVQLAEYYLIVPNQYSLQTMLLLFQRVQLAEYYLIVPNQYSLQTMLLLFQRVQLAEYYLIVPNQYSLQTMLLLFPTSTACRILSYCSQPVQLADYALTVPNEYSLQNIILLFPTSTACRLCSYCSQRVQLAEYYLIVPNQYSLQTMLLLFPTSTACRILSYCSQPVQLADYALTVSNEYSLQNIILLFPTSTACRLCSYCSNEYSLQNIILLFPTSTACRLCSYCFQRVQLAEYYLIVPNQYSLQTMLLLFPTSTACRILSYCSQPVQLADYALTLVQNIILLFPTSTACRLCSYCSQRVQLAEYYLIVPNQYSLQTMLLLFPTSTACRILSYCSQPVQLADYALTVSNEYSLQNIILLFPTSTASRLCSYCSQRVQLADYALIVPNEYSLQNINLLLPTTTACRLCSYRFQRVQLAEYALTKKKGGGATHPRHSI

Uniprot

A0A0L7LG10 A0A0W0YFT3 A0A267H7Z2 F2UM60

Pubmed

26227816

EMBL

JTDY01001277 KOB74319.1 LNYU01000085 KTD55772.1 NIVC01000010 PAA94386.1 + More
GL832981 EGD78209.1

Proteomes

UP000037510 UP000054703 UP000215902 UP000007799

Pfam

PF00023   Ank        + More
PF12796   Ank_2
PF16070   TMEM132

Interpro

IPR020683   Ankyrin_rpt-contain_dom        + More
IPR036770   Ankyrin_rpt-contain_sf
IPR002110   Ankyrin_rpt
IPR001368   TNFR/NGFR_Cys_rich_reg
IPR031437   TMEM132_M

SUPFAM

SSF48403 SSF48403

Gene 3D

1.25.40.20

CDD

cd00204 ANK

ProteinModelPortal

A0A0L7LG10 A0A0W0YFT3 A0A267H7Z2 F2UM60

KEGG

NA

GO

GO:0016021 GO:0005634 GO:0008270 GO:0000150 GO:0000724 GO:0003690 GO:0003697 GO:0008094 GO:0005524 GO:0006281 GO:0006259

Length:

746

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.33320000000002

Exp number, first 60 AAs:

1.88648

Total prob of N-in:

0.15476

outside

1 - 746

Pi

178.170984

Theta

154.889421

Tajima's D

0.530391

CLR

15.391186

CSRT

0.521673916304185

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics