SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15376
Pre Gene Modal
BGIBMGA005107
Annotation
Rad51_homolog_[Bombyx_mori]
Full name
DNA repair protein RAD51 homolog       + More
DNA repair protein RAD51 homolog 1      
Alternative Name
RAD51 homolog A
Location in the cell
Cytoplasmic   Reliability : 2.331
 

Sequence

CDS
ATGAATACCACTGCTTCAGCAACTACGACTTCTTTGGATGAAGATGCTGACGAATGCGGGCCACAGCTGATCAGTAAATTAGAGGGCAATGGCATCACATCAGGAGATATAAAAAAGCTTGAGGAAGCGGGATATCATACTGTTGAATCTGTTGCCTATGCTCCAAAAAAATGGCTAATCACAATTAAAGGGATATCTGAAGCGAAGGCAGATAAAATATTAGCTGAAGCATCTAAATTGGTGCCAATGGGATTTACAACAGCTACTGAGTTTCATCAAAAGAGGGCTGAAATAATACAACTTACTACTGGTTCAAAGGAATTAGATAGATTACTGGGAGGTGGTATAGAAACTGGTTCTATAACTGAAATATTTGGTGAATTCCGTACTGGCAAAACCCAATTATGTCACACATTAGCAGTCACCTGCCAGCTACCCATTGAACAATCTGGTGGAGAGGGTAAATGCATGTACATCGATACAGAAGGAACATTCAGACCGGAAAGACTGCTGGCCGTTGCACAGCGATACGGTATGGAAGGTGCGGCAGTCTTGGACAATGTTGCATATGCAAGAGCTTATAACACAGACCATCAGACCCAATTGCTAGTGCAAGCTTGCGCCATGATGGCAGAGTCAAGATATTCCTTAATTATAGTTGATAGTGCAACCGCTCTATACAGGACAGACTATTCTGGACGAGGGGAACTGAATTCTAGACAACTACATCTGGGTCGTTTCATGAGAATGTTGCTCAGATTGGCTGATGAGTTTGGAGTAGCAGTAATCATAACAAACCAAGTGGTCGCACAAGTGGATGCTGTAGGAGTTTTCAATGCTGATACCAAGAAACCAATCGGAGGTCATATCATAGCGCACGCGTCCACAACTAGACTCTATTTACGGAAGGGTAGAGGTGATAATCGCGTGTGTAAAATATACGATAGTCCGTGCTTGCCCGAAACAGAAGCTATGTTTGCGATTAGCGCTGAAGGCATCACGGATGCTAAGGAATAA
Protein
MNTTASATTTSLDEDADECGPQLISKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADKILAEASKLVPMGFTTATEFHQKRAEIIQLTTGSKELDRLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIEQSGGEGKCMYIDTEGTFRPERLLAVAQRYGMEGAAVLDNVAYARAYNTDHQTQLLVQACAMMAESRYSLIIVDSATALYRTDYSGRGELNSRQLHLGRFMRMLLRLADEFGVAVIITNQVVAQVDAVGVFNADTKKPIGGHIIAHASTTRLYLRKGRGDNRVCKIYDSPCLPETEAMFAISAEGITDAKE

Summary

Description
Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Underwinds duplex DNA.
Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange.
Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination (HR) (PubMed:28575658). Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange (PubMed:26681308). Part of a PALB2-scaffolded HR complex containing BRCA2 and RAD51C and which is thought to play a role in DNA repair by HR. Plays a role in regulating mitochondrial DNA copy number under conditions of oxidative stress in the presence of RAD51C and XRCC3. Also involved in interstrand cross-link repair (PubMed:26253028).
Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination (HR). Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Part of a PALB2-scaffolded HR complex containing BRCA2 and RAD51C and which is thought to play a role in DNA repair by HR. Plays a role in regulating mitochondrial DNA copy number under conditions of oxidative stress in the presence of RAD51C and XRCC3. Also involved in interstrand cross-link repair.
Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination (HR) (PubMed:15834424). Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Part of a PALB2-scaffolded HR complex containing BRCA2 and RAD51C and which is thought to play a role in DNA repair by HR. Plays a role in regulating mitochondrial DNA copy number under conditions of oxidative stress in the presence of RAD51C and XRCC3. Also involved in interstrand cross-link repair (By similarity).
Subunit
Forms linear homooligomers, giving rise to a RAD51 nucleoprotein filament, which is essential for strand-pairing reactions during DNA recombination. Interacts with BRCA1 and either directly or indirectly with p53. Interacts with XRCC3, RAD54L and RAD54B. Interacts with the BCDX2 subcomplex RAD51C:RAD51B. Interacts directly with PALB2 which may serve as a scaffold for a HR complex containing PALB2, BRCA2, RAD51C, RAD51 and XRCC3. Interacts with RAD51AP1 and RAD51AP2. Interacts with CHEK1, and this may require prior phosphorylation of CHEK1. Interacts with the MND1-PSMC3IP heterodimer. Found in a complex, at least composed of BLM, RAD51 and SPIDR; the complex formation is mediated by SPIDR. Interacts with SPIDR; the interaction is direct and recruits RAD51 to DNA damage sites. Interacts with FIGNL1 (via N-terminal one-half region); the interaction is direct. Interacts with RAD51AP1 (via C-terminal region); the interaction is direct. Interacts with NABP2, RPA1, PALB2 and RAD51. Interacts with SWI5/C9orf119, and at lower level with SFR1/MEIR5. Interacts with hyperphosphorylated RPA2; this interaction is necessary for efficient recruitment to chromatin in response to DNA damage. Interacts with SWSAP1; involved in homologous recombination repair. Interacts with PARPBP, BRCA2 and RECQL5; these interactions interfere with the formation of the RAD51-DNA homologous recombination structure. Interacts with POLQ; POLQ acts as an inhibitor of homology-recombination repair (HR) pathway by limiting RAD51 accumulation at resected ends (PubMed:25642963). Interacts with FBH1 (PubMed:23393192). Interacts with POLN (PubMed:19995904). Interacts with RFWD3 (PubMed:28575658). Interacts with the MCM8-MCM9 complex; the interaction recruits RAD51 to DNA damage sites (PubMed:23401855).
Forms linear homooligomers, giving rise to a RAD51 nucleoprotein filament, which is essential for strand-pairing reactions during DNA recombination. Interacts with BRCA1 and either directly or indirectly with p53. Interacts with XRCC3, RAD54L and RAD54B. Interacts with the BCDX2 subcomplex RAD51C:RAD51B. Interacts directly with PALB2 which may serve as a scaffold for a HR complex containing PALB2, BRCA2, RAD51C, RAD51 and XRCC3. Interacts with RAD51AP1 and RAD51AP2. Interacts with CHEK1, and this may require prior phosphorylation of CHEK1. Interacts with the MND1-PSMC3IP heterodimer. Found in a complex, at least composed of BLM, RAD51 and SPIDR; the complex formation is mediated by SPIDR. Interacts with SPIDR; the interaction is direct and recruits RAD51 to DNA damage sites. Interacts with FIGNL1 (via N-terminal one-half region); the interaction is direct. Interacts with RAD51AP1 (via C-terminal region); the interaction is direct. Interacts with NABP2, RPA1, PALB2 and RAD51. Interacts with SWI5/C9orf119, and at lower level with SFR1/MEIR5. Interacts with hyperphosphorylated RPA2; this interaction is necessary for efficient recruitment to chromatin in response to DNA damage. Interacts with SWSAP1; involved in homologous recombination repair. Interacts with PARPBP, BRCA2 and RECQL5; these interactions interfere with the formation of the RAD51-DNA homologous recombination structure. Interacts with POLQ; POLQ acts as an inhibitor of homology-recombination repair (HR) pathway by limiting RAD51 accumulation at resected ends. Interacts with FBH1. Interacts with POLN. Interacts with RFWD3. Interacts with the MCM8-MCM9 complex; the interaction recruits RAD51 to DNA damage sites.
Forms linear homooligomers, giving rise to a RAD51 nucleoprotein filament, which is essential for strand-pairing reactions during DNA recombination. Interacts with BRCA1 and either directly or indirectly with p53. Interacts with XRCC3, RAD54L and RAD54B. Interacts with the BCDX2 subcomplex RAD51C:RAD51B. Interacts directly with PALB2 which may serve as a scaffold for a HR complex containing PALB2, BRCA2, RAD51C, RAD51 and XRCC3. Interacts with RAD51AP1 and RAD51AP2. Interacts with CHEK1, and this may require prior phosphorylation of CHEK1 (By similarity). Interacts with the MND1-PSMC3IP heterodimer (PubMed:15834424). Found in a complex, at least composed of BLM, RAD51 and SPIDR; the complex formation is mediated by SPIDR. Interacts with SPIDR; the interaction is direct and recruits RAD51 to DNA damage sites. Interacts with FIGNL1 (via N-terminal one-half region); the interaction is direct. Interacts with RAD51AP1 (via C-terminal region); the interaction is direct (By similarity). Interacts with NABP2, RPA1, PALB2 and RAD51. Interacts with SWI5/C9orf119, and at lower level with SFR1/MEIR5 (PubMed:20976249). Interacts with hyperphosphorylated RPA2; this interaction is necessary for efficient recruitment to chromatin in response to DNA damage. Interacts with SWSAP1; involved in homologous recombination repair. Interacts with PARPBP, BRCA2 and RECQL5; these interactions interfere with the formation of the RAD51-DNA homologous recombination structure. Interacts with POLQ; POLQ acts as an inhibitor of homology-recombination repair (HR) pathway by limiting RAD51 accumulation at resected ends. Interacts with POLN (By similarity). Interacts with FBH1 (PubMed:24108124). Interacts with RFWD3 (By similarity). Interacts with the MCM8-MCM9 complex; the interaction recruits RAD51 to DNA damage sites (By similarity).
Miscellaneous
The nucleus of a mouse embryonic stem (ES) cells contains on average 4.7 x 10(5) molecules.
Similarity
Belongs to the RecA family. RAD51 subfamily.
Belongs to the RecA family.
Keywords
ATP-binding   Complete proteome   DNA-binding   Nucleotide-binding   Nucleus   Reference proteome   3D-structure   Acetylation   Alternative splicing   Chromosome   Cytoplasm   Cytoskeleton   Disease mutation   DNA damage   DNA recombination   DNA repair   Fanconi anemia   Isopeptide bond   Mitochondrion   Phosphoprotein   Ubl conjugation  
Feature
chain  DNA repair protein RAD51 homolog 1
splice variant  In isoform 4.
sequence variant  In FANCR; causes dominant negative loss of function in interstrand cross-link repair; shows high basal DNA-independent ATPase activity; results in decreased DNA binding.
EMBL
BABH01019687    NWSH01000360    PCG76998.1    ODYU01003577    SOQ42512.1    U94993    + More
AAB53330.1    GDQN01007727    JAT83327.1    AGBW02011359    OWR46788.1    GAIX01013907    JAA78653.1    KQ460045    KPJ18040.1    GECZ01023957    GECZ01010847    JAS45812.1    JAS58922.1    KK853153    KDR10565.1    GFDL01013639    JAV21406.1    GEDC01025968    GEDC01023052    GEDC01008361    GEDC01008200    JAS11330.1    JAS14246.1    JAS28937.1    JAS29098.1    KZ149949    PZC76698.1    DS231865    EDS40393.1    KL671651    KFW83089.1    JXUM01022600    KQ560636    KXJ81493.1    QRBI01000154    RMB98001.1    ABQF01001741    ABQF01001742    ABQF01001743    ABQF01001744    KL243738    KFV13426.1    KK718118    KFO54462.1    QUSF01000061    RLV97201.1    KL217671    KFO97753.1    KL498073    KFO13604.1    KL304997    KFP51963.1    KN126771    KFU92492.1    CH477373    EAT42393.1    KL890540    KGL77915.1    KL447413    KFO73187.1    KL411427    KFR07492.1    KK503549    KFP60542.1    KK502026    KFP19469.1    AKCR02000143    PKK19586.1    KB375693    EMC82304.1    KK402922    KFV60869.1    KK757121    KFP43715.1    KL338022    KFZ51145.1    KL226261    KFM10503.1    KL275757    KFZ66192.1    FX985854    BBA93741.1    KK485873    KFQ61948.1    GFAC01002455    JAT96733.1    KL427743    KFW90735.1    KK734340    KFR06501.1    KL215636    KFV65755.1    KL873572    KGL99192.1    KK463831    KFQ80658.1    KK819184    KFQ39425.1    KK653461    KFQ03265.1    KL467057    KFV17340.1    AGCU01123701    AGCU01123702    AGCU01123703    KL206137    KFV79183.1    GBBM01001651    JAC33767.1    JO843475    AEO35092.1    AFFK01014262    KK837354    KFP80619.1    LMAW01002691    KQK78037.1    AAKN02015884    AAKN02015885    L09655    S59426    KK416813    KFQ85490.1    FR904765    CDQ71381.1    AAWZ02022539    BT046075    ACI34337.1    AQIA01062288    AQIA01062289    AQIA01062290    AQIA01062291    AQIA01062292    AQIA01062293    ADFV01034026    ADFV01034027    ADFV01034028    ADFV01034029    ADFV01034030    ADFV01034031    ADFV01034032    ADFV01034033    AQIB01116312    AQIB01116313    AQIB01116314    AQIB01116315    AQIB01116316    AQIB01116317    AQIB01116318    AQIB01116319    AQIB01116320    AJFE02093122    AJFE02093123    AJFE02093124    AJFE02093125    AJFE02093126    AJFE02093127    AJFE02093128    AHZZ02030811    ABGA01322537    ABGA01322538    ABGA01322539    ABGA01322540    ABGA01322541    ABGA01322542    ABGA01322543    ABGA01322544    ABGA01322545    NDHI03003606    PNJ16221.1    JSUE03038057    JSUE03038058    JSUE03038059    JU473728    JV635768    CM001259    AFH30532.1    AFJ71108.1    EHH27216.1    AACZ04038084    AACZ04038085    GABC01001450    GABF01003101    GABD01009207    GABE01011245    NBAG03000046    JAA09888.1    JAA19044.1    JAA23893.1    JAA33494.1    PNI94354.1    APGK01035041    BT127347    KB740923    KB632326    AEE62309.1    ENN78154.1    ERL92440.1    D13804    D14134    AF165094    AF165088    AF165089    AF165090    AF165091    AF165092    AF165093    AF233744    AF233740    AF233741    AF233742    AF236021    AF233743    EU362635    AY196785    AK131299    AK291969    AK313503    CR536559    AC012476    AC022405    CH471125    BC001459    KK677825    KFQ10381.1    KK931883    KFQ45446.1    CABD030095572    CABD030095573    CABD030095574    GAMS01004701    JAB18435.1    LSYS01006880    OPJ74208.1    AC111293    BC168875    CH473949    AAI68875.1    EDL79891.1    JH000944    RAZU01000234    EGW09314.1    RLQ64482.1    Y08202    BC135425    AAI35426.1    D13473    D13803    AK011242    AK076468    AK151157    AK151177    BC027384    GEBF01001987    JAO01646.1    AEMK02000004    EU302125    AB355632    ABZ89107.1    BAG09486.1    GFWV01023020    MAA47747.1    AAGW02024517    AAGW02024518    AAGW02024519   
Pfam
PF08423   Rad51
Interpro
IPR013632   DNA_recomb/repair_Rad51_C        + More
IPR020588   RecA_ATP-bd       
IPR027417   P-loop_NTPase       
IPR010995   DNA_repair_Rad51/TF_NusA_a-hlx       
IPR016467   DNA_recomb/repair_RecA-like       
IPR020587   RecA_monomer-monomer_interface       
IPR011941   DNA_recomb/repair_Rad51       
IPR003593   AAA+_ATPase       
IPR033925   Rad51_DMC1_RadA       
IPR011940   Dmc1       
SUPFAM
SSF47794   SSF47794        + More
SSF52540   SSF52540       
PDB
5NWL     E-value=8.18123e-142,     Score=1290

Ontologies

Topology

Subcellular location
Nucleus  
Cytoplasm   Colocalizes with RAD51AP1 and RPA2 to multiple nuclear foci upon induction of DNA damage (PubMed:20154705). DNA damage induces an increase in nuclear levels (PubMed:20154705). Together with FIGNL1, redistributed in discrete nuclear DNA damage-induced foci after ionizing radiation (IR) or camptothecin (CPT) treatment (PubMed:23754376). Accumulated at sites of DNA damage in a SPIDR-dependent manner (PubMed:23509288). Recruited at sites of DNA damage in a MCM9-MCM8-dependent manner (PubMed:23401855).   With evidence from 19 publications.
Perinuclear region   Colocalizes with RAD51AP1 and RPA2 to multiple nuclear foci upon induction of DNA damage (PubMed:20154705). DNA damage induces an increase in nuclear levels (PubMed:20154705). Together with FIGNL1, redistributed in discrete nuclear DNA damage-induced foci after ionizing radiation (IR) or camptothecin (CPT) treatment (PubMed:23754376). Accumulated at sites of DNA damage in a SPIDR-dependent manner (PubMed:23509288). Recruited at sites of DNA damage in a MCM9-MCM8-dependent manner (PubMed:23401855).   With evidence from 19 publications.
Mitochondrion matrix   Colocalizes with RAD51AP1 and RPA2 to multiple nuclear foci upon induction of DNA damage (PubMed:20154705). DNA damage induces an increase in nuclear levels (PubMed:20154705). Together with FIGNL1, redistributed in discrete nuclear DNA damage-induced foci after ionizing radiation (IR) or camptothecin (CPT) treatment (PubMed:23754376). Accumulated at sites of DNA damage in a SPIDR-dependent manner (PubMed:23509288). Recruited at sites of DNA damage in a MCM9-MCM8-dependent manner (PubMed:23401855).   With evidence from 19 publications.
Chromosome   Colocalizes with RAD51AP1 and RPA2 to multiple nuclear foci upon induction of DNA damage (PubMed:20154705). DNA damage induces an increase in nuclear levels (PubMed:20154705). Together with FIGNL1, redistributed in discrete nuclear DNA damage-induced foci after ionizing radiation (IR) or camptothecin (CPT) treatment (PubMed:23754376). Accumulated at sites of DNA damage in a SPIDR-dependent manner (PubMed:23509288). Recruited at sites of DNA damage in a MCM9-MCM8-dependent manner (PubMed:23401855).   With evidence from 19 publications.
Cytoskeleton   Colocalizes with RAD51AP1 and RPA2 to multiple nuclear foci upon induction of DNA damage (PubMed:20154705). DNA damage induces an increase in nuclear levels (PubMed:20154705). Together with FIGNL1, redistributed in discrete nuclear DNA damage-induced foci after ionizing radiation (IR) or camptothecin (CPT) treatment (PubMed:23754376). Accumulated at sites of DNA damage in a SPIDR-dependent manner (PubMed:23509288). Recruited at sites of DNA damage in a MCM9-MCM8-dependent manner (PubMed:23401855).   With evidence from 19 publications.
Microtubule organizing center   Colocalizes with RAD51AP1 and RPA2 to multiple nuclear foci upon induction of DNA damage (PubMed:20154705). DNA damage induces an increase in nuclear levels (PubMed:20154705). Together with FIGNL1, redistributed in discrete nuclear DNA damage-induced foci after ionizing radiation (IR) or camptothecin (CPT) treatment (PubMed:23754376). Accumulated at sites of DNA damage in a SPIDR-dependent manner (PubMed:23509288). Recruited at sites of DNA damage in a MCM9-MCM8-dependent manner (PubMed:23401855).   With evidence from 19 publications.
Centrosome   Colocalizes with RAD51AP1 and RPA2 to multiple nuclear foci upon induction of DNA damage (PubMed:20154705). DNA damage induces an increase in nuclear levels (PubMed:20154705). Together with FIGNL1, redistributed in discrete nuclear DNA damage-induced foci after ionizing radiation (IR) or camptothecin (CPT) treatment (PubMed:23754376). Accumulated at sites of DNA damage in a SPIDR-dependent manner (PubMed:23509288). Recruited at sites of DNA damage in a MCM9-MCM8-dependent manner (PubMed:23401855).   With evidence from 19 publications.
Length:
338
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.59352
Exp number, first 60 AAs:
0
Total prob of N-in:
0.10637
outside
1  -  338
 
 

Population Genetic Test Statistics

Pi
232.439992
Theta
154.481114
Tajima's D
1.724245
CLR
0
CSRT
0.832858357082146
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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