Gene

KWMTBOMO15372

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr25(+):10702236-10706440      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.369 PlasmaMembrane   Reliability : 1.136

CDS

ATGGCCCGGGCGCGTGAAGCAATCAACCTGGACGAGATTGGGGCGGAGGAAGGCCTCCGCAGCAGGCAGACGGCCAATGGGGCCAAGCTGTTAGAATGTCCCGGTGCCGATAGTCCCGGCATCGCGGAGCGTCTGGCGGCGAAGCTCCGTATGGTCTTGCCTGAGGAGGAGGTGCGGGTGCACAGGCCGGTAAAAATGGCGGAATTAAGAGTGACCGGCCTGGACGACTGCACCACCAGGGATGAGGTGAGAGCAGCCGTCGCTACCCAGGGCAACTGTGCACCGGAGAATGTGACCGTGGGTGAGCTGCGCCGTGGTTATACCGGGGCCAGCTCAGTGTGGGTGCGTTGCCCGTTGGAGACGGCTGCCTCCCTGGCTGCTCCTCCGCCCGGGGGACCGTCGGGGAATCCAGGCAGGCTGCGCGTGGGCTGGATGGCGGCCCATGTGCGCCTGCTTGAACCACGCGCCTGGCGATGCCTCCGGTGCTTTAGCACCGGACACGGTCTCGCCAGGTGCACTAGCTCGGTTGACCGCAGCGGTCTGTGTTTCCGCTGCGGCCAGCCGGGCCATAAAGCGGCGTCCTGCGCGGCCGCCCCGCACTGCGCTTTGTGCGCTGCGGCCGGGCGCGGGGCTAACCACCGAGCGGGAGGAAAGGCGTGCCTCCCGTCCGGTGATAACACCGAACGCAACCGGCACCGGAAGTCAAAGCGCCGGCAGAAGAGAAAGTTGGCCAGAGGAGCACTGGCCAACGCTGTAATCCCCGCTGCGGCGCCGGTGCCGGAGGGTGGGGGCAGCGGAAACCTGAACCACTCCGCCAGAGCTCAGGACATGCTGTCTCAGAGTATGGCGGAGTGGTCTATAGATGTGGCTGTGGTCGCCGAGCCATATTTCGTTCCCCCGGCAAATGATTGCTGGTTCGGGGACGATGGCGGCCTGGCGGCCATAGCCATAAGAAGAGACGCGGCGATCCCCCCCCTGGCGATGGTGACCAGGGGCCAAGGGTTCGTCGCGGTGCAGTTGGAAGGGACCGTCGTGATCGGGGCGTACTTCTCTCCGAACAGGCCTACTGTCGAGTTCGGGCATTTCCTGGGCGGGATCGGGGCGATTGCTCGCCGCCTCGCTCCCCGTCCAGTGATTCTCGCGGGGGATCTCAACGCGAAGTCTGTCGCATGGGGCTCCCCCCGCTCGGACGCTCGTGGTAGGCTACTGGAGAGGTGGGCGAACGCGGCCGGCCTCTGTTTGTTGAATAGAGGTTCGGTTGCGACGTGCGTGCGGTGGCAGGGCGAGTCTATTGTGGACGTTACGTTCGCGAGTCCAGCCATCGCGCGCCGTATCTGCGACTGGAAGGTTTTGGAGGGGGCGGAGACGCTGTCAGATCACCGATATATTCGGTTTGATCTCTCCGCCCGCTCCACAGTCGCAGACGTCCACGGGGACCACCCCCGTAGTGCGTCTCGGTCATTCCCCAAGTGGGCACTGAAGCGCCTGAATAAGGAGCTCCTGATGGAAGCCTCTATAGTGGCGGCGTGGGCGCCCATGCGTCCACACCCGGTCGAGGTCGAGAGCGAGGCGGGGTGGTTCCGGGACACGATGCGTCGCATTTGTGATGCGTCGATGCCCCGGATCGGCCCTCGACTTCCTAATCGCCAGGCGTACTGGTGGTCGCCCGAAATTGCGCAACTCCGCGTGGAGTGCGTTCGGGCGAGGCGCGAGTGCGCCAGACATCGCCGCCGCCGCCTGCCGCGGCGCAACGATCCGGTTGCGTTCGCGGCAGCAGAGGCCCGGCTGCACGGCGCATTTCGCGTCGCGCAGAGGGCATTGCAGCTGGCCATCAGAAGAGCCAAGAACCAACACATGGAGGGTCTCTTGGAGACGCTGGATGAGGATCCGTGGGGGCGGCCCTATCATATGGTGCGCAATAAAATGCGCCCATGGGCCCCCCCGATCACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGACATCGTCTCGGCGCTGTTCCCGCAGGAGCGGGAGGGATTTGTCGCTCCCGCTATGGACGCGCCGCCGGACTACGACGGCGAAGCCCCTGCTGAGGTGCCCCGTATAACGGGGGCGGAGCTCCGTGTGGCCGTTCGCAAAATGTGCGCGAAGGACACTGCACCCGGCCCGGATGGTGTCCATGGCCGGGTTTGGGCCTTGGCTCTTGGTGCCCTAGGGGACCGACTCTTGAGACTTTACAACTCCTGCCTCGAGTCGGGACGGTTTCCTTCATCGTGGAGGACGGGCAGACTCGTGCTGTTGAGAAAGGAGGGGCGCCCGGCGGATACTGCCGCCGGGTACCGTCCCATCGTGTTGCTGGATGAGGTGGGCAAGCTGCTGGAACGCATTCTGGCAGCCCGCATCATCCAGCATCTAGTCGGGGTGGGACCCGATCTGTCGGCGGAGCAGTATGGCTTCCGAGAGGGCCGCTCAACGGTAGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCGTCTCCAGGGGTGGGGTGGCTTTGGCGGTGTCGCTCGATATCGCCAATGCGTTTAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAACGACATAGAGTGCCCCCCTACCTTCGCCGGCTGGTGGGTTCCTACTTAGAGGACAGATCGGTCACGTGTACCGGACACGGTGGGATCCTGCACCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTGCTCGGCCCCCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGAGGTGCCCTCCTCCCGGGCCTGAGCGTTATCTGTTACGCAGACGACACGTTGGTCGTGGCCCGGGGGGGAGTTTTGCTGAGTCTGCCCGTCTTGCTACGGCTGGGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCATATCGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGAACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTGCCCAACGTCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGATCAATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTGGCGAAGCTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCCTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTTCTGGAAGCGGAGGCGCTCGCCGCTGACTATAAGTGGCGGGCTGACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGGCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGACGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTCCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGTTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGCGACTTGGACACGGCAGAGCATACGCTCGTCGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAACCGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAATCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCAAGCCCTGGCCCTCTAA

Protein

MARAREAINLDEIGAEEGLRSRQTANGAKLLECPGADSPGIAERLAAKLRMVLPEEEVRVHRPVKMAELRVTGLDDCTTRDEVRAAVATQGNCAPENVTVGELRRGYTGASSVWVRCPLETAASLAAPPPGGPSGNPGRLRVGWMAAHVRLLEPRAWRCLRCFSTGHGLARCTSSVDRSGLCFRCGQPGHKAASCAAAPHCALCAAAGRGANHRAGGKACLPSGDNTERNRHRKSKRRQKRKLARGALANAVIPAAAPVPEGGGSGNLNHSARAQDMLSQSMAEWSIDVAVVAEPYFVPPANDCWFGDDGGLAAIAIRRDAAIPPLAMVTRGQGFVAVQLEGTVVIGAYFSPNRPTVEFGHFLGGIGAIARRLAPRPVILAGDLNAKSVAWGSPRSDARGRLLERWANAAGLCLLNRGSVATCVRWQGESIVDVTFASPAIARRICDWKVLEGAETLSDHRYIRFDLSARSTVADVHGDHPRSASRSFPKWALKRLNKELLMEASIVAAWAPMRPHPVEVESEAGWFRDTMRRICDASMPRIGPRLPNRQAYWWSPEIAQLRVECVRARRECARHRRRRLPRRNDPVAFAAAEARLHGAFRVAQRALQLAIRRAKNQHMEGLLETLDEDPWGRPYHMVRNKMRPWAPPITERLQPQQLRDIVSALFPQEREGFVAPAMDAPPDYDGEAPAEVPRITGAELRVAVRKMCAKDTAPGPDGVHGRVWALALGALGDRLLRLYNSCLESGRFPSSWRTGRLVLLRKEGRPADTAAGYRPIVLLDEVGKLLERILAARIIQHLVGVGPDLSAEQYGFREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPYLRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGVLLSLPVLLRLGPRRVPPVDAHIVVGGVHIGVGVQLKYLGLILDSRWTFRAHFQNLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYKWRADLRARGVARPSPSVVRARRGQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECHHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGTDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQSRRRRAGAREADLAQALAL

Uniprot

Q868Q4   A0A2W1C3J5   A0A0J7KIY5   A0A0J7KYD2   A0A0J7MY17   A0A2S2PEZ7   + More
X1WJY4   J9LVU7   A0A0J7KQY4   J9JWJ3   A0A0J7KIS5   A0A2H8TIE5   T1DCM0   A0A2S2NQQ6   A0A2M4CS98   A0A2M4ADW9   J9KJG8   J9KNN8   A0A2M4BC18   A0A2M4BC24   W8ADE4   W8ANK7   A0A034WR48   A0A142LX45   J9KT61   J9KUM6   A0A2M4CJ33   Q868S8   J9LQQ1   J9JY94   Q868S0   A0A2M4BBA7   Q868S2  

Pubmed

12644555    28756777    24330624    24495485    25348373    25527032    + More

EMBL

AB090825    BAC57926.1    KZ149896    PZC78733.1    LBMM01006954    KMQ90166.1    + More
LBMM01002052    KMQ95336.1    LBMM01014122    KMQ85315.1    GGMR01015159    MBY27778.1    ABLF02011238    ABLF02034925    LBMM01004262    KMQ92649.1    ABLF02013358    ABLF02013361    ABLF02054869    LBMM01006977    KMQ90149.1    GFXV01002090    MBW13895.1    GALA01001777    JAA93075.1    GGMR01006838    MBY19457.1    GGFL01004044    MBW68222.1    GGFK01005660    MBW38981.1    ABLF02041886    ABLF02023257    GGFJ01001453    MBW50594.1    GGFJ01001454    MBW50595.1    GAMC01020519    GAMC01020515    JAB86040.1    GAMC01020517    JAB86038.1    GAKP01002292    JAC56660.1    KU543683    AMS38371.1    ABLF02009073    ABLF02030702    ABLF02042963    ABLF02041557    GGFL01001192    MBW65370.1    AB090813    BAC57902.1    ABLF02030663    ABLF02041312    ABLF02007989    AB090817    BAC57910.1    GGFJ01001194    MBW50335.1    AB090816    BAC57908.1   

Proteomes

UP000036403    UP000007819   

PRIDE

Q868Q4   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF00098   zf-CCHC
PF13966   zf-RVT
PF00075   RNase_H

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR026960   RVT-Znf       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.30.420.10    

ProteinModelPortal

Q868Q4   A0A2W1C3J5   A0A0J7KIY5   A0A0J7KYD2   A0A0J7MY17   A0A2S2PEZ7   + More
X1WJY4   J9LVU7   A0A0J7KQY4   J9JWJ3   A0A0J7KIS5   A0A2H8TIE5   T1DCM0   A0A2S2NQQ6   A0A2M4CS98   A0A2M4ADW9   J9KJG8   J9KNN8   A0A2M4BC18   A0A2M4BC24   W8ADE4   W8ANK7   A0A034WR48   A0A142LX45   J9KT61   J9KUM6   A0A2M4CJ33   Q868S8   J9LQQ1   J9JY94   Q868S0   A0A2M4BBA7   Q868S2  

PDB

1WDU     E-value=1.62545e-10,     Score=164

KEGG

105841773    no KO assigned | (RefSeq) serine/arginine repetitive matrix protein 1-like

GO

GO:0003964   GO:0016746   GO:0016021   GO:0003676   GO:0008270   GO:0004523   GO:0051082   GO:0000122   GO:0004818   GO:0005737   GO:0006424   GO:0006412   GO:0016876   GO:0043039  

Length:

1289

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.770049999999998

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00743

outside

1  -  1289

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

76.493494

CSRT

0

Interpretation

Uncertain